Lsi03G012790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G012790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Location	chr03 : 23617463 .. 23622973 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAAAATAAAAATAAAAAAAATTCCCTTGTTACTTAGCACTGGCGAAGGCCGATTGGCATTTGGGAAGGTCCGGGTTCGTTCATCTGAGGTACAGAGACTTCACTTCATTCACGAACAGCGAGAGAGGTTGAAATGGCATGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGAATCTTGCTCTGCCAATCCTCTCCTTCAAGCGCCCCCGCTAGGTATTCCGCTTCTGCTCTCTTTTACGCTTTACGGTCCCTTTTAAAACTGCAAATCGTGCTCTTCCCGGAGCTTATTTTCAGAGATTGTTTGATTAAAGGAGTTCTGGCTCTGACAGGGCATTTGTGGAAAAGAATTACAAGGATCTCAAGACTTTGAATCCCAAATTTCCAATTTTGATCCGCGAATGCAGTGGAGTCGAGCCGCAATTATGGGCTAGATATGGTACTTCAATGCCCTCTACCCCCTCAAATGATTTCATTTCGTTTTATTTTCTTTGCTCTAGGTTTCGAGATTCTTTCGAGCTTTGATGTTTTATTTACCGCTATACTCGAATTGATTGATAAGCGCGATTAGTGATGTCAAATAATCTGCTGGGTGGTCTTTCTTTGACATTGATTATTACATTCGTTATCTATTAGTCATGAAAATATTCTTTCCATGGTCGATAGTCAGGTCATACTATTTTGAAGACACCATTTCCAGGATGTAGTAAATGCCCATCTAATCGAATTCGTTCTGGGTTTATTTTGTCAAGCTTTGCAGTTTTCTTTTGTTTTCTTATGTGAACTGTGACACTTGACTGGTCCTGTGGTTTCTCAAGTAGAATAAAAATCAACTGGTTCTACTCCTATGCTGAAATCTTCGTTTACCTTCTAAATGAAGGAGAAATTAGTAGCCACGGGAGTTTCACTGTGTCCCATTTTCCCTCGACTGTCATTCACCCCCGAAAGAAAACATATTGTTAAGATGATCTGTTCTTACTTTTGGTTATAGTCGGTCGCTGATCTTTCAAGATAGACACTCATGAGTCATGAGTAGTAGTGATATAAACTTTTAGGCTCTTACAGATGCAAGGATAGATTCACTTATTTGTTAATTCATGTTTTCAGTTTTACTTATTTCTTTTTGTCTTTGGCTTTCAGAAATTTTAATTGCATATTTTATAGGTAACGTTGTGGCAATTTAACACATTCACACTTTAAGATATGGTATTTAGTTCTTCACATCAATGCTATATTGCTATCTAAAATAAACTTAACAATATATGTGATAAGGAATCATGAAATTATTCAGATTCAAGTTCTTCAACCGACACTTGTGTAGACTATAGTGTAGTTACACTCAACAATATTAGGTTTGCTTGATATCCATGTAAAAATCCTTAGAGTATTTCACTTTTGTTCCACTTTTTTATTATTTGAGATTATCAATTTATTTATTTATTTATTTATTATTATTATTGTTTATAATGAGAACCAAGCTTTCATTGAAAGAATATACAAGGGCATAAAAAAAATGAAAAAAAAACTAGCCCCATAACTAGGAGTCTAACACTAATTAAGAAAGGACTACAATCCAAAAGAATAAAACCTAATTGATAATTACAATAAAGTAGAGAGACCAAAACCCACTACAAGGTATTAAAATGAAAAATATCCCAAATCTCATTTGCAGATCTCTTCACACCCTTGAAAATCCTACCATTCCTCTCAAGCCAAAGTCCCTAAAATCCCCGCAAAAATACACACCTGCCATAAAACTTGGCCTTTTTGCTGAAAGGGAGATTCAAAAGAGTCTCTTCAATCTGAGGTAACTTGAGGTAACTTTTTGGTGCAATGTGTTGGGCCTTCTGTTTTCTATGTTGATTTTAGGCTTCAGATGTAGAAACTAGATGGGTTGTTCCTGATTTTCTTCTTCATGTTGATATGTAATATTTAACTTTTTTCGAAAGAGTCTCTTCAATCAAGAAGAACTGCCTCTGTTACAAACCCAGCAGATCCTCTAGGAATCCTGACAACGCTCCCCGATTGCTAAAGTATACTTACAGTCGACCAAAAAAGGAATCAAATCCTCCTACACTTGATGACACAGAGCATCATTGTGAGCACAACATAATGGAAGAGTGCTTTTGAATATGACCCAATGTGTTAAGTTTCTAATGAAGAACCTGTCATGCAAAGAATTTGATCTTTTTGGGAATCTTTACCTTTGAAAGAGAGGAGAAAGCAAAAGCACTGGGAGGGGTAGGAGGGCCATAAGTGGAAAGATAACAACGAACCAGGATAGAAAACCCATGAAGGATTAGGGGACCAAAAGCGAATATCCCTTCTCCTTGGACTCATCAAAAAGTCACCTATTAGCAAATAGGACCACCCCATCAATGGCATCCCTACTGGTCAAAGGGCGGTTGAACCCCAAAAACCAGAAGAAAATGAAGGGGAATCTAGAGGAGGATGAAGGCTACCTAATGCGACCTTTTGTCTAAAAGATGGTACAAGTGAGGAAACATAGAACAAACAGGTTTACCACCTATCCACCAATCTTCTAAAAATTAGACCTTTATACCTATTCCCAGTAGACCATTTAATAAAGTGCACAGAAATTGAAAAACTTTACAAAAAAAACATTTGGAGGACATTTAGAGTAAAATAAAATAGGGTAGACAAAACCAACGTCACAACTCACAACCAAAAAAATTTTTTGCCCAACTGCTAAGCTTCTCCTGGCTGCAATTTATCCCAAAATCTGACACTTCTCCTATTGATCTTAAATTCTTAAGCCTAGATATAATTTCAAAAAAGCTGCCTATATATAACTTCGAAAAAGCCAGCATATTATTTAAAATTAAGAATGAATCCTTCCTACTCCTACTAGAATAAAAAAGGATTGTGCCGTTGGTGAATTGAAGGTGAGATGAAGACACATTCTCTTTACCAACCTCAAAGGGCTCAATAATTTTACCTTCAACAATCGGAGAAATGATCCTACTCAGCACATCCACCACAAGCAAGAAAAGAAAAGGTGATAAAGGATCCCTCAGTCTAAGGCCCCTAAAAGCCTTTATCTTGTTCTTCAGACTCCCATTAATGAGAATAGAGTAACTCACACTTCGAGTACAACTCCACATTCTCATCCTCCATTTATACCCAAATTCTTTTTCTCCATCAGCCTCCCAAAAAATTCCCATTGACAATTTTTTTAAAATTAATTTTAAGAAAATGATACAAAACTTTCTATTAAGGGAATGAAAAGAGACTAGTGCTTTGAGATACAAAAGGATACAGGAAGGGCTATTGTTTGGGGGATTTGGATTGAGAGGAATAACAAAAACTTTAGGAAAATGGACAGATCAAGTGAGGAAGTATGGGAGTGGGCTAGGTTCAATGCCTCATCTTGAATGTTAATAGACTCTTTTGTAACTATGATCTTGCTTTGATTTTGTTAGATTGGGTTTCCTCTTGCCCCTTGCTCCTTGCTTTTTGTCGGGCTCTTTTTTTCTTTTGTCGTGCTTTTTTTGTATGCCATGTATTCCTTTTATTCTTTCCCGATGAAAGTTCAGTTTTAGGAAGGACTTCTTTTTGGGGGATAATTTACTTGGTAGCAAAATGTACAGTCGACTTCAGGAGGCTGTTCAAAAAGGTTAACTGCTGTACAAAAAGAGATTGAAACATTCATCAATCTGTAATTATGATCCACAAAACATTCATCAAGTGAGGAAGTATGTGAACTTCAGGGAAATGTATATACTGGGATTTCCTATGAGTAGCTCCCAAATAAGAGTGTTCATCCTTCCAAGCGCATTTGCATTCGTTTTGGCTCAAGGATTCCAGAATCCTTTGTGACGACATTCAAAAGAAACTTGCAGGCTTGCAGCCAAATGAGCAGAATCATAAAGCTACAGCCACTTGTCTTCCACAGGCCTAATCATGGATTTAACAAGGGGTATCCATAAGAGAGATTCATTTTTGGACTTCCAAACTTATAGAAAAGCATTTGAAACGACATAATTGAAGAAAAAATGGTAGGGACTGGGAGAGCTATATTACCCTTCCGAGGGATCTGGTGTTTTCTCAGGATCTGGTGTTTGTTCAATACCTTCCATGTTAGTCTCTTGAAGCCAATCCCTCTTTCAGTTTGAAAATGGCTTTCTAAGGGGCCTTTAGTGGTTTTGGTGGTTGGTTGAGTGGATCACCAGCCACCTCTGGAAAAGAGAAAAAAGAGGAGAGGCTTCTTACGCAGATGGACAAAGTGAAAGCTTGTGATTATGGGGATTGGAATTACCTTGATGGTGTTCTGAGAATGAAAGATTTTGGTTCAAGATGGAGGTCACGGATTGACACTTCCACCAACAATTGTGGAGATTATCATCTGGAAAATGGAAGTGGAGGACATGCTTTCTTTGTTTTCTTAACCATCTGGTTTGGCCCATGATCATAGGGAACGATTAGTGAACGATAATAGATGTTTCTTATGAATGCTAATATCTCATAAGTGTTTGACGTTAAATTTCATAAGATTAGATATATCTTTTATGAAAGAGTTATCATGTGCTGAAATTTAAAGGATATGTGACTGCGATATGCACCTTTTATGTTCGTTTTTGGTTACTGCAACCAATTATTTTTCCATTTTTCCTTTTGATTTGGCAGACATGGGCATTGAGAGGGTTGCTCGTCTGGAGGGCTTGAGTGAGGCACAGATCTCGAAGGCGCTCGAAGACCTAGTTAAAGTTGGGGCATCCTGAAGGAGTAATCTACTGTGCTATTGTTACTTGCAACAGACGTTAATAAATGCACGAGTGGAACTTTTGTTGAGATTGAGATGCTTTTCTGTTTACGTTCTCTTCGCTCAGCTTTTTTGAGGTTATTGCTCAAATGTTCATCTTGAGAAATCGTGTCTGGTAAGTATGCCTATTTGTTTATATTTCTCCGGGAGTTGTCATAATGGATACTCTTTGCAATGAGATATTAGATTGAAAAATATTAAAACATGAGACAATAAATGGATAACTTTTAAACCACAAGGATACATTGAAAAAACAATACAACGTCAAGTACTAAAACATGATTAAAATACACAAAAAGTTAGCAAGTATAGCAAGCTTTCAAAGTTGTTAGGAGTTCTGGGAGTGGCTTATTTTTATTTTATAGAATATTATGACTTGTATTGTAATCTTCACATATGGACTTTATCGATTTAGTAGATGGAGTAGAAAATCTAGGTAACCTAAGGTAGAGAGTTCGTATGATGAAGTTTGGGAGGTAGTGAGGTTTAATGCGTCTTTGTGGGCTTTTATCACTCGGATTTTTTTTGTTCTTATGATCTTGGTTTGATTTTGTTGGGTTGAAAGTAGTTAGTTCTTGGACTCTTCCTTTTGTTGGGCATGCTTTTTGTATGTCCATTTTTCTCAATGTATTCTCATTTTCCTACTCGGGAAATAAATAAATAACAATATGATCAGTTTGAAGCAAAATGTTGTGATTTGATGTTTGCTTTTTTAAA

mRNA sequence

AAAAAGAAAAAAAATAAAAATAAAAAAAATTCCCTTGTTACTTAGCACTGGCGAAGGCCGATTGGCATTTGGGAAGGTCCGGGTTCGTTCATCTGAGGTACAGAGACTTCACTTCATTCACGAACAGCGAGAGAGGTTGAAATGGCATGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGAATCTTGCTCTGCCAATCCTCTCCTTCAAGCGCCCCCGCTAGGGCATTTGTGGAAAAGAATTACAAGGATCTCAAGACTTTGAATCCCAAATTTCCAATTTTGATCCGCGAATGCAGTGGAGTCGAGCCGCAATTATGGGCTAGATATGATTCAAGTTCTTCAACCGACACTTGTGTAGACTATAGTGTAGTTACACTCAACAATATTAGAGTCTCTTCAATCAAGAAGAACTGCCTCTGTTACAAACCCAGCAGATCCTCTAGGAATCCTGACAACGCTCCCCGATTGCTAAAGTATACTTACAGTCGACCAAAAAAGGAATCAAATCCTCCTACACTTGATGACACAGAGCATCATTACATGGGCATTGAGAGGGTTGCTCGTCTGGAGGGCTTGAGTGAGGCACAGATCTCGAAGGCGCTCGAAGACCTAGTTAAAGTTGGGGCATCCTGAAGGAGTAATCTACTGTGCTATTGTTACTTGCAACAGACGTTAATAAATGCACGAGTGGAACTTTTGTTGAGATTGAGATGCTTTTCTGTTTACGTTCTCTTCGCTCAGCTTTTTTGAGGTTATTGCTCAAATGTTCATCTTGAGAAATCGTGTCTGGTAAGTATGCCTATTTGTTTATATTTCTCCGGGAGTTGTCATAATGGATACTCTTTGCAATGAGATATTAGATTGAAAAATATTAAAACATGAGACAATAAATGGATAACTTTTAAACCACAAGGATACATTGAAAAAACAATACAACGTCAAGTACTAAAACATGATTAAAATACACAAAAAGTTAGCAAGTATAGCAAGCTTTCAAAGTTGTTAGGAGTTCTGGGAGTGGCTTATTTTTATTTTATAGAATATTATGACTTGTATTGTAATCTTCACATATGGACTTTATCGATTTAGTAGATGGAGTAGAAAATCTAGGTAACCTAAGGTAGAGAGTTCGTATGATGAAGTTTGGGAGGTAGTGAGGTTTAATGCGTCTTTGTGGGCTTTTATCACTCGGATTTTTTTTGTTCTTATGATCTTGGTTTGATTTTGTTGGGTTGAAAGTAGTTAGTTCTTGGACTCTTCCTTTTGTTGGGCATGCTTTTTGTATGTCCATTTTTCTCAATGTATTCTCATTTTCCTACTCGGGAAATAAATAAATAACAATATGATCAGTTTGAAGCAAAATGTTGTGATTTGATGTTTGCTTTTTTAAA

Coding sequence (CDS)

ATGGCATGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGAATCTTGCTCTGCCAATCCTCTCCTTCAAGCGCCCCCGCTAGGGCATTTGTGGAAAAGAATTACAAGGATCTCAAGACTTTGAATCCCAAATTTCCAATTTTGATCCGCGAATGCAGTGGAGTCGAGCCGCAATTATGGGCTAGATATGATTCAAGTTCTTCAACCGACACTTGTGTAGACTATAGTGTAGTTACACTCAACAATATTAGAGTCTCTTCAATCAAGAAGAACTGCCTCTGTTACAAACCCAGCAGATCCTCTAGGAATCCTGACAACGCTCCCCGATTGCTAAAGTATACTTACAGTCGACCAAAAAAGGAATCAAATCCTCCTACACTTGATGACACAGAGCATCATTACATGGGCATTGAGAGGGTTGCTCGTCTGGAGGGCTTGAGTGAGGCACAGATCTCGAAGGCGCTCGAAGACCTAGTTAAAGTTGGGGCATCCTGA

Protein sequence

MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYDSSSSTDTCVDYSVVTLNNIRVSSIKKNCLCYKPSRSSRNPDNAPRLLKYTYSRPKKESNPPTLDDTEHHYMGIERVARLEGLSEAQISKALEDLVKVGAS

Homology

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BLAST of Lsi03G012790 vs. Swiss-Prot
Match: NDUA2_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana GN=At5g47890 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-27
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRG +SK++KELRILLCQSSP+SAP R FVEKNYKDLK+LNPK PILIRECSGV+PQ+
Sbjct: 1  MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQM 60

Query: 61 WARYDSSSSTDTCVDYSVVT 81
          WARYD     + CV+   +T
Sbjct: 61 WARYD--MGVERCVNLDGLT 78

[Close]

BLAST of Lsi03G012790 vs. Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 11 LKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYDSSSST 70
          L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY     T
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75

Query: 71 DTCVDYSVVTLNNIRVSSIKK 92
          +       V LNN     + +
Sbjct: 76 N-------VPLNNFSADQVTR 89

[Close]

BLAST of Lsi03G012790 vs. Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 4  RGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWAR 63
          RG+L   L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWAR
Sbjct: 11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 70

Query: 64 YDSSSSTDTCVDYSVVTLNNIRVSSIKK 92
          Y      +       V+LNN     + +
Sbjct: 71 YAFGQEKN-------VSLNNFSADQVTR 89

[Close]

BLAST of Lsi03G012790 vs. Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 11 LKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARY 65
          L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69

[Close]

BLAST of Lsi03G012790 vs. Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 11 LKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARY 65
          L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69

[Close]

BLAST of Lsi03G012790 vs. TrEMBL
Match: A0A0A0LDA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G845450 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRG+LSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGKLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. TrEMBL
Match: G7IFY7_MEDTR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Medicago truncatula GN=MTR_2g034290 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKN+KELR+L+CQSSP+S+ ARAFVEKNYK+LKTLNPK PILIRECSGVEPQL
Sbjct: 1  MAWRGQLSKNIKELRLLMCQSSPASSSARAFVEKNYKELKTLNPKLPILIRECSGVEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. TrEMBL
Match: A9P8N8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQSSPSS+  R F+EKNYKDLKTLNPK PILIREC+G+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSSSTRTFIEKNYKDLKTLNPKLPILIRECNGIEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. TrEMBL
Match: I3SRB5_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKN+KELR+L+CQSSP+S+ ARAFVEKNYK+LKTLNPK PILIRECSGVEPQL
Sbjct: 1  MAWRGQLSKNIKELRLLMCQSSPASSSARAFVEKNYKELKTLNPKLPILIRECSGVEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. TrEMBL
Match: A9PIT1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQSSPSS+  R F+EKNYKDLKTLNPK PILIREC+G+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSSSTRTFIEKNYKDLKTLNPKLPILIRECNGIEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. TAIR10
Match: AT5G47890.1 (AT5G47890.1 NADH-ubiquinone oxidoreductase B8 subunit, putative)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRG +SK++KELRILLCQSSP+SAP R FVEKNYKDLK+LNPK PILIRECSGV+PQ+
Sbjct: 1  MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQM 60

Query: 61 WARYDSSSSTDTCVDYSVVT 81
          WARYD     + CV+   +T
Sbjct: 61 WARYD--MGVERCVNLDGLT 78

[Close]

BLAST of Lsi03G012790 vs. NCBI nr
Match: gi|659130434|ref|XP_008465169.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. NCBI nr
Match: gi|449446787|ref|XP_004141152.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRG+LSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGKLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. NCBI nr
Match: gi|743920552|ref|XP_011004325.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQSSPSS+  R F+EKNYKDLKTLNPK PILIREC+GVEPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSSSTRTFIEKNYKDLKTLNPKLPILIRECNGVEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. NCBI nr
Match: gi|743920550|ref|XP_011004324.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQSSPSS+  R F+EKNYKDLKTLNPK PILIREC+GVEPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSSSTRTFIEKNYKDLKTLNPKLPILIRECNGVEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

[Close]

BLAST of Lsi03G012790 vs. NCBI nr
Match: gi|357448965|ref|XP_003594758.1| (NADH-ubiquinone oxidoreductase 10.5 kDa subunit [Medicago truncatula])

HSP 1 Score: 126.7 bits (317), Expect = 3.7e-26
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKN+KELR+L+CQSSP+S+ ARAFVEKNYK+LKTLNPK PILIRECSGVEPQL
Sbjct: 1  MAWRGQLSKNIKELRLLMCQSSPASSSARAFVEKNYKELKTLNPKLPILIRECSGVEPQL 60

Query: 61 WARYD 66
          WARYD
Sbjct: 61 WARYD 65

The following BLAST results are available for this feature:

BLAST of Lsi03G012790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA2_ARATH	2.6e-27	71.25	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thal...	[more]
NDUA2_HUMAN	1.2e-13	48.15	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=...	[more]
NDUA2_BOVIN	1.6e-13	46.59	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=ND...	[more]
NDUA2_MACFA	3.6e-13	62.96	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicula...	[more]
NDUA2_PONAB	3.6e-13	62.96	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=...	[more]

BLAST of Lsi03G012790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDA2_CUCSA	3.3e-29	96.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G845450 PE=4 SV=1	[more]
G7IFY7_MEDTR	2.6e-26	87.69	NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Medicago truncatula GN=MTR_2g...	[more]
A9P8N8_POPTR	2.6e-26	87.69	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
I3SRB5_MEDTR	2.6e-26	87.69	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A9PIT1_9ROSI	2.6e-26	87.69	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of Lsi03G012790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47890.1	1.4e-28	71.25	NADH-ubiquinone oxidoreductase B8 subunit, putative	[more]

BLAST of Lsi03G012790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130434\|ref\|XP_008465169.1\|	1.6e-29	98.46	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449446787\|ref\|XP_004141152.1\|	4.7e-29	96.92	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|743920552\|ref\|XP_011004325.1\|	2.8e-26	89.23	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|743920550\|ref\|XP_011004324.1\|	2.8e-26	89.23	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|357448965\|ref\|XP_003594758.1\|	3.7e-26	87.69	NADH-ubiquinone oxidoreductase 10.5 kDa subunit [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016464	NADH_Ub_cplx-1_asu_su-2
IPR012336	Thioredoxin-like_fold
IPR007741	Ribosome/NADH_DH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G012790.1	Lsi03G012790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 28..67 score: 1.6
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 20..100 score: 1.0
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 135..161 score: 3.3E-26coord: 10..64 score: 3.3
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 10..75 score: 3.8
IPR016464	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2	PANTHER	PTHR12878	NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT	coord: 2..65 score: 4.7
None	No IPR available	unknown	Coil	Coil	coord: 161..165 scor
None	No IPR available	PANTHER	PTHR12878:SF0	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 2	coord: 2..65 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G012790	Csa3G845450	Cucumber (Chinese Long) v2	culsiB186
Lsi03G012790	CSPI03G40960	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G012790	Cucsa.340710	Cucumber (Gy14) v1	cgylsiB551
Lsi03G012790	CmaCh06G017470	Cucurbita maxima (Rimu)	cmalsiB755
Lsi03G012790	CmaCh14G010710	Cucurbita maxima (Rimu)	cmalsiB240
Lsi03G012790	CmoCh06G017340	Cucurbita moschata (Rifu)	cmolsiB748
Lsi03G012790	CmoCh14G010890	Cucurbita moschata (Rifu)	cmolsiB228
Lsi03G012790	Cla017191	Watermelon (97103) v1	lsiwmB240
Lsi03G012790	MELO3C026758	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G012790	ClCG10G013160	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G012790	MELO3C026758.2	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G012790	Bhi11G001276	Wax gourd	lsiwgoB292
Lsi03G012790	Cp4.1LG03g09300	Cucurbita pepo (Zucchini)	cpelsiB504
Lsi03G012790	CsGy3G038430	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G012790	Carg23326	Silver-seed gourd	carlsiB249
Lsi03G012790	Carg11280	Silver-seed gourd	carlsiB748

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G012790	Cucumber (Gy14) v1	cgylsiB297
Lsi03G012790	Cucurbita pepo (Zucchini)	cpelsiB500
Lsi03G012790	Cucurbita pepo (Zucchini)	cpelsiB709
Lsi03G012790	Wild cucumber (PI 183967)	cpilsiB181
Lsi03G012790	Cucumber (Chinese Long) v2	culsiB183
Lsi03G012790	Cucumber (Gy14) v2	cgyblsiB168
Lsi03G012790	Cucumber (Chinese Long) v3	cuclsiB200
Lsi03G012790	Cucumber (Chinese Long) v3	cuclsiB203
Lsi03G012790	Watermelon (97103) v2	lsiwmbB218