Carg11280 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11280
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Location	Cucurbita_argyrosperma_scaffold_013 : 1377330 .. 1383348 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACCACCGAACTGATTGCAATAAGACCGTAAAAATAACAAAAATTCCGTCGCTACTTGGCGTTGGCGTAGCCTCGATAGGCATCTGGGAAGGAGCTTCATTCATCTGAGAGCTAGAGTGACTTCACGAACAGCGAGAGACGGAGAAATGGCCTGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGGATCTTGCTCTGCCAAACCTCTCCTTCAAGCGCCCCCGCTAGGTATTCCGTTTCTCTTCTCTTTTACGCTTTACGATCCCTTCTAAAACCACATATCCTGCTCCTCCCCGAGCTTCTTTTCGAAGATTGTTGATTAATGGAGCTTTGGTTCTCACAGGGCATTTGTGGAAAAGAATTACAAAGAACTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGGGAATGCAGTGGGGTCGAGCCGCAATTGTGGGCTAGATATGGTACTTTAATCTCCTCTTCCTCCCAAATGATTTCATGTCGTTTTATTTTCTTCCCTTTAGGTTTCGAGTTTCTTTCGAGCTTTGCGGTTTTATTTTCCCACATTCTTTTCATGAAGTCAATGATATGGCCGACTTGATTGATAAGCGCGATTAGCTATGTCAAATACTCTGCTGGGTAATTTTTCTTTTGCATCGATTATTACTTTTCGTTGTCTATGTGTGATGGAAGGTACTCTTTCCATGGTAGATAGTCAGGTCGTAGTATTTTGAATGCTCCATTACCAGGGATATCGTAATACCCATCTAATCGAATTCGTTCTCGGTTGATTTTGTCAAGCTTTGAAGTTTTCTTTTACTTTGTTCTGTGAACTGTGAAATTTGACTGGTCCTATGGTTTCTCAAGTAAAATAAAAACCAACTTGTCCTGATATAGAATCTGCTCCTACGCTGACATCTTCGTTTTACCTTCTAAATGAAGGAGAAATTAGTAGCCACTGGAGTTTTACTGTGTCCCATTTTCACTTAACTAGCATTCACCCTCGAAAGAAAATATATTGTTAGGATAAGCTGTTTTTACTTTTGGTTATGGTTGGTGGCTGATCTTTCAGGAGAGACACTCATGAGTAGTAATGATATAAACTTTTAGCTTCTTACAAATGCAAGGAGGGATTCATTTATTTGTTAACTTTTTTTTTTCTTTTTTTCTTTTGTCTTTGGCTTTCAAAAATTTTAATTGCATATGTTACAGATAACATTGTGGTAACATAAGACTTTTTCATATTAAGTGGTGATATTTAGTTCTTCACATCAATGTTTTCTATAGTATTCTTATCAAGATATATGATAAGGAATCATGAAACTACTCAGATTCAAGTTCTTTGACCAACATTTGTGTAGACTGCAGTGTATTTACACTCAAAAAATTTGTCAAATGATGAATAGTAGTATTATTATCCTTTTGGTGGTAATAGAACCTTAAGCATAAATTTGTTTTAAATATCATTGTAATTCCTTATTCAAGTTCATTTTGTACATTTCACTATTTTTTTGATGGGATAATAAGTTATATAAGTTGTTATGTGGCCTCGGACTAATTATGGAAAAATGTTCATTGGACATTATCCGGAACATTAATAGAATGTTGAAACTTGATATTTACATTCCAATTTTTTGTTTCCACGAAATCATTGGTCTGCAACTTTACTTTTATATGAATCACGTTGCGTCATGATTTCTTCTTCTTCTTCTTTCATTTTTCTTTCTTCTATGAGAAACAAGTGACCTTCATTTCATTGATAAGCAGAGAGTAAGGCCATAGTCCCGAAAAGTGGGGGAATTTTCACCAAGTGAGAGCAATGTAAGCAAGGTGTTAGGAAAAAAAAAATAATAAAAAAAAAGAGAGACGAAATATGTAGCTTTTTCCTTGAAGATGCATCAATTTTGCTTGAGGCATGTTAACCAATGGAGGATTTTGTTGAAACAGTCCCATATGACCTCTTGTTCTTTGCTGAAGAGGTGCCCATATGAGCATCTCTAAAAGAGTCATTGAAACCAAGCGAAAGAAATGAAAGATTATTCAAAGGCTTACAGAAATAAAAACATTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGCCCCACAAGGAGTCCAACACTAATTAAAAAAGTACTCCAATAGAAAAGAATAAAGCCTGATCGATAATTACAAAAAAGCAGAGAGACTAAAATCCACGAGTAGGTATTAAAATGAAAAATCTCCCAAATCCCATTTGCCGATCACTTCACATTCCTAAAAGACCTACTATTCTTCTCAAGCAAAAGCCCCTAAAACACTGTAAAAATTCACACCTGCCATAAAACTCGGCCTTTATCCTGAAAGGGAGATTGAAAGGGTCTCTTCAGTCAAAGAAAAACAACCTCTGTTATAAACCGAACAAATCCTGATGATGCTCCCAAACTACCAAAGTTCACTTACAGTCAACCAAATAATGATCCAAACTTTCCTATGCTTGATGACAACAAGAGCACCATTTCCAGCCCAACACAAAAGAGGAGTGCTTCTGAACACAACCTAAGCTGTTAACTTTCTAATGAAGAACCTCCCACCCAAAGAATTTGACCTTTTTGGGATTCTTTAACTTTTCAAAGAGAGGAGAAAGCAAAAGCTCTTGGAGGGGGAGAAGGGCCACTTAGCAAGTGGAAAAATAAAAATGAACCAGGAGAGAAATCCCATGAAGGATTGGAGGACAAAAAGCCAATACCCCTGCTCCTTCAACTCACCAAAGAGTCGCCTATTAGCAAATAGGGCCACTCCATTAATACCTTCCCTATTCGCCAAAGGGTGGTTGAACCCAAAGATCCAAAAGAAGAAAACAAAGGGGAATCTGGAGAGGGAGGACAAAGGCCACATAATGCAACCTTTTGTATAAATGATGGTACAAGCGAGGAAACACAAACAAAGGGGTTTATTGTAAATAATTTTGAACCATCAACTAAAGTTGATTTCGTAGGAGTAAAATGAATTGTGTTACTGACAGTGAGAGTTATTGTACAATAACTAGTTATTTTTGTTGATAATTGTTGTTAGTCAATTTGCTTATTGATTAGTTGGTTGTTTAAGTGCTCTAGTGTATTAAGTGACGACTGCTGTATAACAGTATAACAGATGTGGCCCCATCACGATCTTAATTGAAGAATCTCTATTCTATAGGTTGTTCTATAGGCTGTGCAACTGTGCCCTCGAGTTCTTAGGAAAAGGTATTAAGTCTTTGTAGTACTACCTTTATTATATAGAAAAAAGATTTCTCAAGTATTTTTTGACATTAGCCTAAGCCAACAATTTCCACCCATAGAGTTCGAGAAAACTTATTAACGAAAATTTTAGGAATGACTTTTTTTTTTTTTTTTATAATGTACCTGGTAGCAAAATGTACAGTTAACTTCAGGAGGCTACTCAAAAAGAGATTGAAACATTCATCAATCTTGATCCACAAAACTTTAGAGATTCTCTCAGTGAATTAAATTTTCCCCGCAAGATCATATTCTTTACTGTCAAATTATCGTGAATCATTGGATTGTTCTGACGTGGTGGACTTGAAACAACTAATGTCTTATGTAATTTGCTAGAAATAAATAACATGGACTCAAAAATGAGAGTTTTCGAAGGTTACGAAATTTATATATCATACTTCGTAAAAGAAAAGGTTGTGTCATTCTATGTGATTAAGATTCTTATTGGAAACTTGTTGCTAGTTAGCTTATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCCAATGCTAATAGAGTGCTTTGTTCTTTTCTTTTCTTTTCTTTTTTTCTTTCTTTTTTTTTTTCCCCATCTCCTCACTAAGAACTACAACTATCAAAGTATGAAGCCCTATCCATTCTTTTTATCAAGAGATCAAGGATGTTGTTAATGTTTGCCTTGAAAGTTCGACTCACTTGAAATGTCACAGACAACCTTGACATTGTGTTGAAGTTCATTTGCCACAGTTTGTGCAGTCATATGGAAGTAGTTAAATTTTATAGATTTTGACATCTTAAGTGGTAAAGTGGTGAATCTAGGTACTAATGGGAAACTGAACTTTTTAATTTCATTATTTCAAGTTTAGTTCTCGAATTTTATAAAGTATCTAAACGGTCGTGAACTTTCAATTTTCAGTCTAAAATTAACTTATTAAAAAAATTTACAATGTTACTAATATGTTACATATAAATTTGAATTTTATATCTACTAGAATTCTAAACTTTCATTTTAGTGTTTAGTAAGTTTGTGAATTTTTAAATCGAATATGTGAAAGATCTATTAGATACAAAATTGAAATTTTAGGGTTGGATATAGAATTAAAAGTTGACTTATTAGAAATTCTTTAAAGTTAAAAGAGACTAAATAAACATGAACTTAAAAATGAGACCTTGGATACTTATTAAGTTGTACTTACTAAGGTTGTCAAACATTTATTAAAAGTTTTTTAGGATTATTTTGATGAGGAACATGATTGGGGAATATGGATAGATAATAAAGAAAAACTCTTTGAACCTGGATATCCTTGGATATGCTAAAACTAGTTGAACCACGGGGCGGCAAAGGTGAAAGTAAAACTGAAAACCATGGGGCAGCAAAGGTAAAAGTAAAACCAAAAATCATGGTAGGCGGAATAGATAGGCAATGAAAAAATCATGGTGGGGGAACTGTAGATATTGGGATTTTACCTTCATTTTATCAGGAGTGTTAATGATTATCAGTAGCTCCCAAATAATAGTTTTGAGTTTCTTTTGATATCTATTTTCATCTTTCTATGCGTATTCGCATAAGTTTTGGGTCAAGGATTCCAGAATCCTTTCTGACACTTTCAAAAGAGACTTGCTGCCAAATGAACAGAGTCATAAAGCGACAACCACTTGTCTTCCACAAGCCTAAGCATGGATTTAACAAGGTTATCCAGAACCGCTTGTTCGAAGTTTAGGTTCCAAGAAGATTTGTTGGAATTACAAACTTATTCGAAGGCATTCAAAACAACATAATTCAATAAAAAAAATGGCAGACAGAGCTATATCTGAGGGTCTTCTCTAGATCTGGTGTTTGTTCAATACGTTTCATACTAGTCTCTTTAAGAAAATACCTCTTTCATTTCGAAAGTGGCTTTGTAAGGAGCCTTTATTGGTTTTGATGGCTGCTTGAGTGGACCTCCAAACACGTTTGGAAACTCCATATTGTTTTAGCTAATTATCGATCCATTCATAAAGCTGGTGATAATGGGGATTGGAATTATCTTGATGCTGTTCTGAGAATGAAAGATTTTGGTTCAAGGTGAAGGTCATGGATTTACACTTCCACAAACAATTGTAGATATTATCATCAGATAATCGGAAGTGGAGGACATGCTTTCTTTGCTCCTTCAACTATTTGGTTTGGTCCATGTCATAGGACAATTGGTGAATGTTAATGTCATAAGATTAGATATTGTTTGTTTGAAAGATAGATGATGCACTGAAATTTAAAGGATATTTATGTTCGTGTTTGGTTAATGCAACTGAGTATTTTTCCTTTTTTTCTTTTTGATTTGACAGACATGGGCATTGAAAGGGTTGCTCGTCTAGAGGGTTTGAGCGAGGCACAGATCTCGAAGGCACTTGAAGACCTAGTCAAAGTTGGGGCATCCTGAAGGAGTAATCTGCTGTGCTATTGTACTGCAGCAGACGTCAATAAATGCACGAGTGGAACGTTTGTTGAGATGCTTTTGTGTTTACATTCTGTTCGCTCAGCTCTTTTGAGATTATTGCTCAAATATTCATCTTCAGAAATCATGTTTCTGGTACGTATGTCTATTTGTCTATATGGAGAGTTATTGTCATAATGGTGATAATGAGTTCCACATTTTCCTCAAACAGTTGGTCACAATAATTTCATAGAATTGGATACGTTCTATTTTTAGATGGAATGGATCTAAAATGCTTATTTCTATCTGAAATTTTCATCTTCATTCAAGTATCTTTTTTCATTGGATATTCAGCTTACATTGTTGATGATATATATCTT

mRNA sequence

TGACCACCGAACTGATTGCAATAAGACCGTAAAAATAACAAAAATTCCGTCGCTACTTGGCGTTGGCGTAGCCTCGATAGGCATCTGGGAAGGAGCTTCATTCATCTGAGAGCTAGAGTGACTTCACGAACAGCGAGAGACGGAGAAATGGCCTGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGGATCTTGCTCTGCCAAACCTCTCCTTCAAGCGCCCCCGCTAGGGCATTTGTGGAAAAGAATTACAAAGAACTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGGGAATGCAGTGGGGTCGAGCCGCAATTGTGGGCTAGATATGACATGGGCATTGAAAGGGTTGCTCGTCTAGAGGGTTTGAGCGAGGCACAGATCTCGAAGGCACTTGAAGACCTAGTCAAAGTTGGGGCATCCTGAAGGAGTAATCTGCTGTGCTATTGTACTGCAGCAGACGTCAATAAATGCACGAGTGGAACGTTTGTTGAGATGCTTTTGTGTTTACATTCTGTTCGCTCAGCTCTTTTGAGATTATTGCTCAAATATTCATCTTCAGAAATCATGTTTCTGGTACGTATGTCTATTTGTCTATATGGAGAGTTATTGTCATAATGGTGATAATGAGTTCCACATTTTCCTCAAACAGTTGGTCACAATAATTTCATAGAATTGGATACGTTCTATTTTTAGATGGAATGGATCTAAAATGCTTATTTCTATCTGAAATTTTCATCTTCATTCAAGTATCTTTTTTCATTGGATATTCAGCTTACATTGTTGATGATATATATCTT

Coding sequence (CDS)

ATGGCCTGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGGATCTTGCTCTGCCAAACCTCTCCTTCAAGCGCCCCCGCTAGGGCATTTGTGGAAAAGAATTACAAAGAACTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGGGAATGCAGTGGGGTCGAGCCGCAATTGTGGGCTAGATATGACATGGGCATTGAAAGGGTTGCTCGTCTAGAGGGTTTGAGCGAGGCACAGATCTCGAAGGCACTTGAAGACCTAGTCAAAGTTGGGGCATCCTGA

Protein sequence

MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQLWARYDMGIERVARLEGLSEAQISKALEDLVKVGAS

Homology

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BLAST of Carg11280 vs. NCBI nr
Match: XP_022935669.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. NCBI nr
Match: XP_022983615.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 6.8e-45
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQI KALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQILKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. NCBI nr
Match: XP_023526206.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 6.8e-45
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEK YKELKTLNPKFPILIRECSGVEPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKTYKELKTLNPKFPILIRECSGVEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. NCBI nr
Match: XP_008465169.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQ+SPSSAPARAFVEKNYK+LKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. NCBI nr
Match: XP_004141152.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis sativus] >KGN59778.1 hypothetical protein Csa_3G845450 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.4e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRG+LSKNLKELRILLCQ+SPSSAPARAFVEKNYK+LKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGKLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. TAIR10
Match: AT5G47890.1 (NADH-ubiquinone oxidoreductase B8 subunit, putative)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-38
Identity = 71/95 (74.74%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRG +SK++KELRILLCQ+SP+SAP R FVEKNYK+LK+LNPK PILIRECSGV+PQ+
Sbjct: 1  MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQM 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMG+ER   L+GL+E QI KALE+LVK GA+
Sbjct: 61 WARYDMGVERCVNLDGLTEPQILKALENLVKSGAT 95

[Close]

BLAST of Carg11280 vs. Swiss-Prot
Match: sp|Q9FIJ2|NDUA2_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At5g47890 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-37
Identity = 71/95 (74.74%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRG +SK++KELRILLCQ+SP+SAP R FVEKNYK+LK+LNPK PILIRECSGV+PQ+
Sbjct: 1  MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQM 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMG+ER   L+GL+E QI KALE+LVK GA+
Sbjct: 61 WARYDMGVERCVNLDGLTEPQILKALENLVKSGAT 95

[Close]

BLAST of Carg11280 vs. Swiss-Prot
Match: sp|P0CB79|NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii OX=9601 GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-19
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 11  LKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQLWARYDMGIER 70
           L+E+RI LCQ SP S   R F+EK Y ELK  NP  PILIRECS V+P+LWARY  G E+
Sbjct: 16  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 75

Query: 71  VARLEGLSEAQISKALEDLVKVGAS 96
              L   S  Q+++ALE+++K  AS
Sbjct: 76  NVPLNNFSADQVTRALENVLKPEAS 100

[Close]

BLAST of Carg11280 vs. Swiss-Prot
Match: sp|P0CB80|NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus OX=9600 GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-19
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 11  LKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQLWARYDMGIER 70
           L+E+RI LCQ SP S   R F+EK Y ELK  NP  PILIRECS V+P+LWARY  G E+
Sbjct: 16  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 75

Query: 71  VARLEGLSEAQISKALEDLVKVGAS 96
              L   S  Q+++ALE+++K  AS
Sbjct: 76  NVPLNNFSADQVTRALENVLKPEAS 100

[Close]

BLAST of Carg11280 vs. Swiss-Prot
Match: sp|Q02370|NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus OX=9913 GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-18
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 4  RGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQLWAR 63
          RG+L   L+E+RI LCQ SP S   R F+EK Y ELK  NP  PILIRECS V+P+LWAR
Sbjct: 11 RGKL--GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 70

Query: 64 YDMGIERVARLEGLSEAQISKALEDLV 91
          Y  G E+   L   S  Q+++ALE+++
Sbjct: 71 YAFGQEKNVSLNNFSADQVTRALENVL 95

[Close]

BLAST of Carg11280 vs. Swiss-Prot
Match: sp|Q4R5E2|NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis OX=9541 GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-18
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 11 LKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQLWARYDMGIER 70
          L+E+RI LCQ SP S   R F+EK Y ELK  NP  PILIRECS V+P+LWARY  G E+
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 75

Query: 71 VARLEGLSEAQISKALEDLV 91
             L   S  Q+++ALE+++
Sbjct: 76 NVPLNNFSADQVTRALENVL 95

[Close]

BLAST of Carg11280 vs. TrEMBL
Match: tr|A0A1S3CN67|A0A1S3CN67_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502835 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.7e-45
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQ+SPSSAPARAFVEKNYK+LKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. TrEMBL
Match: tr|A0A0A0LDA2|A0A0A0LDA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845450 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.2e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRG+LSKNLKELRILLCQ+SPSSAPARAFVEKNYK+LKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGKLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS
Sbjct: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. TrEMBL
Match: tr|A0A2I4FC77|A0A2I4FC77_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Juglans regia OX=51240 GN=LOC108997425 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRG LS+N+KELRILLCQTSP+S+ ARAFVEKNYK+LKTLNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGHLSRNMKELRILLCQTSPASSSARAFVEKNYKDLKTLNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYDMG+ER  RLEGL+EAQI KA+EDLVKVGAS
Sbjct: 61 WARYDMGVERGIRLEGLTEAQILKAVEDLVKVGAS 95

[Close]

BLAST of Carg11280 vs. TrEMBL
Match: tr|A0A2P5F8N1|A0A2P5F8N1_9ROSA (NADH dehydrogenase [ubiquinone] (Complex I), alpha subcomplex, subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_101900 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQ+SP+S+  RAFVEKNY++LK LNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPASSATRAFVEKNYQDLKALNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYD+G+ER  RLEGLSEAQI+KALEDLVK GA+
Sbjct: 61 WARYDLGVERGIRLEGLSEAQITKALEDLVKAGAA 95

[Close]

BLAST of Carg11280 vs. TrEMBL
Match: tr|A0A2P5AQA2|A0A2P5AQA2_PARAD (NADH dehydrogenase [ubiquinone] (Complex I), alpha subcomplex, subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_310440 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-38
Identity = 78/95 (82.11%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MAWRGQLSKNLKELRILLCQTSPSSAPARAFVEKNYKELKTLNPKFPILIRECSGVEPQL 60
          MAWRGQLSKNLKELRILLCQ+SP+S+  RAFVE+NY++LK LNPKFPILIRECSG+EPQL
Sbjct: 1  MAWRGQLSKNLKELRILLCQSSPASSATRAFVERNYQDLKALNPKFPILIRECSGIEPQL 60

Query: 61 WARYDMGIERVARLEGLSEAQISKALEDLVKVGAS 96
          WARYD+G+ER  RLEGLSEAQI+KALEDLVK GA+
Sbjct: 61 WARYDLGVERGIRLEGLSEAQITKALEDLVKAGAA 95

The following BLAST results are available for this feature:

BLAST of Carg11280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935669.1	1.4e-45	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita mos...	[more]
XP_022983615.1	6.8e-45	98.95	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita max...	[more]
XP_023526206.1	6.8e-45	98.95	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita pep...	[more]
XP_008465169.1	1.2e-44	96.84	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis...	[more]
XP_004141152.1	3.4e-44	95.79	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis...	[more]

BLAST of Carg11280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47890.1	1.5e-38	74.74	NADH-ubiquinone oxidoreductase B8 subunit, putative	[more]

BLAST of Carg11280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FIJ2\|NDUA2_ARATH	2.7e-37	74.74	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thal...	[more]
sp\|P0CB79\|NDUA2_PONAB	9.8e-19	54.12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii OX=...	[more]
sp\|P0CB80\|NDUA2_PONPY	9.8e-19	54.12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus O...	[more]
sp\|Q02370\|NDUA2_BOVIN	2.8e-18	52.87	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus OX=99...	[more]
sp\|Q4R5E2\|NDUA2_MACFA	8.3e-18	53.75	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicula...	[more]

BLAST of Carg11280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CN67\|A0A1S3CN67_CUCME	7.7e-45	96.84	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Cucumis melo OX=...	[more]
tr\|A0A0A0LDA2\|A0A0A0LDA2_CUCSA	2.2e-44	95.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845450 PE=4 SV=1	[more]
tr\|A0A2I4FC77\|A0A2I4FC77_9ROSI	1.3e-39	85.26	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Juglans reg...	[more]
tr\|A0A2P5F8N1\|A0A2P5F8N1_9ROSA	1.1e-38	83.16	NADH dehydrogenase [ubiquinone] (Complex I), alpha subcomplex, subunit OS=Trema ...	[more]
tr\|A0A2P5AQA2\|A0A2P5AQA2_PARAD	2.4e-38	82.11	NADH dehydrogenase [ubiquinone] (Complex I), alpha subcomplex, subunit OS=Parasp...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR016464	NADH_Ub_cplx-1_asu_su-2
IPR007741	Ribosome/NADH_DH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11280-RA	Carg11280-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 20..93 e-value: 1.5E-24 score: 97.5
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 28..78 e-value: 1.9E-13 score: 50.0
IPR016464	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2	PIRSF	PIRSF005822	NDUA2	coord: 1..95 e-value: 2.3E-39 score: 131.9
IPR016464	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2	PANTHER	PTHR12878	NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT	coord: 1..93
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 2..94 e-value: 1.8E-36 score: 126.2
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 10..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11280	Cla017191	Watermelon (97103) v1	carwmB0816
Carg11280	Csa3G845450	Cucumber (Chinese Long) v2	carcuB0831
Carg11280	MELO3C026758	Melon (DHL92) v3.5.1	carmeB0811
Carg11280	ClCG10G013160	Watermelon (Charleston Gray)	carwcgB0792
Carg11280	CSPI03G40960	Wild cucumber (PI 183967)	carcpiB0852
Carg11280	Cucsa.340710	Cucumber (Gy14) v1	carcgyB0935
Carg11280	CmaCh06G017470	Cucurbita maxima (Rimu)	carcmaB1135
Carg11280	CmaCh14G010710	Cucurbita maxima (Rimu)	carcmaB1132
Carg11280	CmoCh06G017340	Cucurbita moschata (Rifu)	carcmoB1106
Carg11280	CmoCh14G010890	Cucurbita moschata (Rifu)	carcmoB1102
Carg11280	Lsi03G012790	Bottle gourd (USVL1VR-Ls)	carlsiB748
Carg11280	CsGy3G038430	Cucumber (Gy14) v2	carcgybB0804
Carg11280	MELO3C026758.2	Melon (DHL92) v3.6.1	carmedB0822
Carg11280	Bhi11G001276	Wax gourd	carwgoB0951

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11280	Carg23326	Silver-seed gourd	carcarB314

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11280	Cucurbita pepo (Zucchini)	carcpeB1147
Carg11280	Cucurbita pepo (Zucchini)	carcpeB1148
Carg11280	Cucumber (Chinese Long) v3	carcucB0855