Lsi03G009770 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G009770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Costars family protein abracl protein
Location	chr03 : 18875468 .. 18877236 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTAGAGGAGGAAGTTGAGCGACTCAAGGAGGAAATTCAAAGGCTCGGCAAGCTTCAAGATGATGGTTCTTACAAGGTATTTTACAAATCTGTAAACAAGAGTTCCCTTCTTCTCTTTTCTTTGCTTTCGGATTCTTTTTTTCCATTTTTCAGGTCAACTGTTCTTGCCCGATTTCAATCTTTCTCATAATGCAGAAATTTACCGATTAGGCTTCGAAATATGGTGTTTTTGAGTTGGATCTTGAATTAGAAACTGGGTTGTTTTTATATTATCGTATCGATTATTTTTCTCATAGTTTCAGAACGAGATCTGCTTGCCTATTGCCTGTTTGATGTTTTGCCATTATTGGGTCTGATTGAGTTTGGCCAAAAATCTGAAGTAAATTGAATTTTATTGAGTTACTAGATTTATTTAGAACCGACGTGTTTGTATAACATTGCACATTCAAATCCATTTGAAAGCCAGCTTGCCTTTAACTTGTGAATCTAGCCTCTCTTCATTGGATAAAAAGGTTGAAATCCAATCTTATATGATTTGGATCATGCTTAATTGGAGTATGGTAACTTGGCTTATTGGATATTTTGAGCATTTAGTTGCAATATTTTCCTTTTCCTCACTTGATAAAATTTGGTCAGAATTAGAGAATCTGAAAGATGGTCATAGAGATGGACTTTTCAGGAACATTACTTTCCTTTGGTAGAGATAGTTGATGGGCAGCTTCATTTTTATTTCTTTCTCATGAGATCTTCAAGAGAAGTGTGTTCTAATCTAATCAAGTATTTAGAACTGAGATATATCTGCCAGCAATGATGAATCTAGTTCTTTGCAGATGTCAATAACTTCTCGAAAGTTGTTGTTCAGTCATTCATTTCTTTGTTCTAATCAAATATTTAGAACTAGATGCATCTGCTAGCAGTGTTGAAACTAGTTCTTTGCAGCTAAAAAATCAGATTTCATATGGCATTATCTAACATTACAAGGGTGAAACTCATGAACCAAAAACTTGCAGCTCTTCGAGCTTTCCTGTAGTGGTCAAAAGCTCGCTAAGCTTCGCTTCCCTCCCCCTCCCCTCCACTGAGGGAAAGTCTTCACTTAATAGTTGGCATTCTATAAGCTACTTGTCGAGTCTACGAAGCGTTTCATCTTGTAGTCGGCCCATAATCCTTCCCTTCATTTGCTTGCCTGTCTGTTTTATCTATTTCTAGTAGCTAACTCTTCAAGAATCTGGGATTTCAATTTGCAGGTAACATTTGGGGTGTTGTTCAATGATGATAGATGTGCTAACATATTCGAAGCGCTGGTCGGGACGCTAAGAGCAGCAAAGAAGAGAAAAATAGTGACTTATGATGGTGAGTTGTTGCTGCAAGGAGTTCATGATAATGTTGAGATCGTTCTCAAAGCCATTCCAACAACAGAAGTTGCAAGCACTGCAGCTGTGAAGGCAGCTTGAGAGTGATGATTCATATGTAATATGGAAAAACAGTGTATGCATCTTGAATTTCTATGTTCTATAACCAATATTGAGTATCATAATTTTCATTTAATAACATGTTTTTCAATTTCCTTGTGTTCTAGATCTGATAACTTTTGTGAGGCTTACCCCTTGTCCGTTGATCCAAATTTTATCAAATGGCAAAGTTGTTCTAATAGGTAGGAAGTAATAATTATTTAGGGTTGTTGCAAATATAGTAATAAGATCCAAAGTATTCGTAGATTTAGCACAATGTAAAAAAATTTGCAAATATAGTAAAATTTAAATCAAA

mRNA sequence

ATGAATGTAGAGGAGGAAGTTGAGCGACTCAAGGAGGAAATTCAAAGGCTCGGCAAGCTTCAAGATGATGGTTCTTACAAGGTATTTTACAAATCTTTTCAGAACGAGATCTGCTTGCCTATTGCCTGTTTGATGTTTTGCCATTATTGGGGTGAAACTCATGAACCAAAAACTTGCAGCTCTTCGAGCTTTCCTGTAGTGGTAACATTTGGGGTGTTGTTCAATGATGATAGATGTGCTAACATATTCGAAGCGCTGGTCGGGACGCTAAGAGCAGCAAAGAAGAGAAAAATAGTGACTTATGATGGTGAGTTGTTGCTGCAAGGAGTTCATGATAATGTTGAGATCGTTCTCAAAGCCATTCCAACAACAGAAGTTGCAAGCACTGCAGCTGTGAAGGCAGCTTGAGAGTGATGATTCATATGTAATATGGAAAAACAGTGTATGCATCTTGAATTTCTATGTTCTATAACCAATATTGAGTATCATAATTTTCATTTAATAACATGTTTTTCAATTTCCTTGTGTTCTAGATCTGATAACTTTTGTGAGGCTTACCCCTTGTCCGTTGATCCAAATTTTATCAAATGGCAAAGTTGTTCTAATAGGTAGGAAGTAATAATTATTTAGGGTTGTTGCAAATATAGTAATAAGATCCAAAGTATTCGTAGATTTAGCACAATGTAAAAAAATTTGCAAATATAGTAAAATTTAAATCAAA

Coding sequence (CDS)

ATGAATGTAGAGGAGGAAGTTGAGCGACTCAAGGAGGAAATTCAAAGGCTCGGCAAGCTTCAAGATGATGGTTCTTACAAGGTATTTTACAAATCTTTTCAGAACGAGATCTGCTTGCCTATTGCCTGTTTGATGTTTTGCCATTATTGGGGTGAAACTCATGAACCAAAAACTTGCAGCTCTTCGAGCTTTCCTGTAGTGGTAACATTTGGGGTGTTGTTCAATGATGATAGATGTGCTAACATATTCGAAGCGCTGGTCGGGACGCTAAGAGCAGCAAAGAAGAGAAAAATAGTGACTTATGATGGTGAGTTGTTGCTGCAAGGAGTTCATGATAATGTTGAGATCGTTCTCAAAGCCATTCCAACAACAGAAGTTGCAAGCACTGCAGCTGTGAAGGCAGCTTGA

Protein sequence

MNVEEEVERLKEEIQRLGKLQDDGSYKVFYKSFQNEICLPIACLMFCHYWGETHEPKTCSSSSFPVVVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVASTAAVKAA

Homology

[Close]

BLAST of Lsi03G009770 vs. Swiss-Prot
Match: COSA_PICSI (Costars family protein WS02710_H03 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-21
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 67  VVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPT 124
           VV FGVLF+DDRCANIFEALVGTLRAAKKRK+VTYDGELLLQGVHDNVEIVL   PT
Sbjct: 29  VVKFGVLFSDDRCANIFEALVGTLRAAKKRKVVTYDGELLLQGVHDNVEIVLLKPPT 85

[Close]

BLAST of Lsi03G009770 vs. Swiss-Prot
Match: COSA_ORYSJ (Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-20
Identity = 49/60 (81.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGV+FNDDRCANIFEALVGTLRAAKKRKIV YDGELLLQG HDNVEI L   P    A
Sbjct: 28  VTFGVIFNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITLLPPPAVAAA 87

[Close]

BLAST of Lsi03G009770 vs. Swiss-Prot
Match: COSA_ORYSI (Costars family protein OS=Oryza sativa subsp. indica GN=OsI_012692 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-20
Identity = 49/60 (81.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGV+FNDDRCANIFEALVGTLRAAKKRKIV YDGELLLQG HDNVEI L   P    A
Sbjct: 28  VTFGVIFNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITLLPPPAVAAA 87

[Close]

BLAST of Lsi03G009770 vs. Swiss-Prot
Match: COSA_ARATH (Costars family protein At4g33640 OS=Arabidopsis thaliana GN=At4g33640 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV ++GELLLQGVHD VEI L+  P    A
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPPQA 87

Query: 128 STAAVKAA 136
           + A   ++
Sbjct: 88  AAATAASS 95

[Close]

BLAST of Lsi03G009770 vs. Swiss-Prot
Match: COSA_EUTHA (Costars family protein ST45-2 OS=Eutrema halophilum PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-19
Identity = 49/63 (77.78%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV + GELLLQGVHD VEI L+  P    A
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFPGELLLQGVHDKVEITLRPPPPPPQA 87

Query: 128 STA 131
             A
Sbjct: 88  VAA 90

[Close]

BLAST of Lsi03G009770 vs. TrEMBL
Match: A0A0A0KWI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182240 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.5e-27
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+YDGELLLQGVHDNVEI+LKAIPTTEVA
Sbjct: 24  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 83

Query: 128 STAAVKAA 136
           STAAVK A
Sbjct: 84  STAAVKTA 91

[Close]

BLAST of Lsi03G009770 vs. TrEMBL
Match: A0A067KCM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18762 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-21
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLK--AIPTTE 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEI LK  + P T 
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEITLKPTSQPATA 87

Query: 128 VASTAAVK 134
            A+T+A+K
Sbjct: 88  TAATSAMK 95

[Close]

BLAST of Lsi03G009770 vs. TrEMBL
Match: A0A061E247_THECC (C6orf115, putative OS=Theobroma cacao GN=TCM_007362 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-21
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRK++TYDGELLLQGVHDNVEI LKAIP    A
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKVLTYDGELLLQGVHDNVEITLKAIPPPATA 87

Query: 128 STA 131
           +++
Sbjct: 88  ASS 90

[Close]

BLAST of Lsi03G009770 vs. TrEMBL
Match: B9HEA7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03140g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-21
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKA--IPTTE 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRK +TYDGELLLQGVHDNVEI+LKA  +P +E
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEIILKAAPLPASE 87

Query: 128 VASTAAVK 134
            A+ + VK
Sbjct: 88  AATDSVVK 95

[Close]

BLAST of Lsi03G009770 vs. TrEMBL
Match: B9S9L9_RICCO (Protein C6orf115, putative OS=Ricinus communis GN=RCOM_0886770 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKI+TYDGELLLQGVHDNVEI+LKA P    A
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKILTYDGELLLQGVHDNVEIILKAAPEPASA 87

Query: 128 STA 131
           + A
Sbjct: 88  TAA 90

[Close]

BLAST of Lsi03G009770 vs. TAIR10
Match: AT4G33640.1 (AT4G33640.1 unknown protein)

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-21
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV ++GELLLQGVHD VEI L+  P    A
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPPQA 87

Query: 128 STAAVKAA 136
           + A   ++
Sbjct: 88  AAATAASS 95

[Close]

BLAST of Lsi03G009770 vs. NCBI nr
Match: gi|778692368|ref|XP_011653450.1| (PREDICTED: costars family protein [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+YDGELLLQGVHDNVEI+LKAIPTTEVA
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 87

Query: 128 STAAVKAA 136
           STAAVK A
Sbjct: 88  STAAVKTA 95

[Close]

BLAST of Lsi03G009770 vs. NCBI nr
Match: gi|700198735|gb|KGN53893.1| (hypothetical protein Csa_4G182240 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+YDGELLLQGVHDNVEI+LKAIPTTEVA
Sbjct: 24  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 83

Query: 128 STAAVKAA 136
           STAAVK A
Sbjct: 84  STAAVKTA 91

[Close]

BLAST of Lsi03G009770 vs. NCBI nr
Match: gi|659108934|ref|XP_008454461.1| (PREDICTED: costars family protein [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 5.2e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHD VEI+LKAIPTTEVA
Sbjct: 28  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDKVEIILKAIPTTEVA 87

Query: 128 STAAVKAA 136
           +TAAVK A
Sbjct: 88  TTAAVKTA 95

[Close]

BLAST of Lsi03G009770 vs. NCBI nr
Match: gi|1009151411|ref|XP_015893539.1| (PREDICTED: costars family protein ST45-2-like [Ziziphus jujuba])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDD+CANIFEALVGTLRAAKKRK++TYDGELLLQGVHDNVEI+LK  PTT  A
Sbjct: 70  VTFGVLFNDDKCANIFEALVGTLRAAKKRKVLTYDGELLLQGVHDNVEIILKPPPTTSTA 129

Query: 128 STAA 132
           + AA
Sbjct: 130 TVAA 133

[Close]

BLAST of Lsi03G009770 vs. NCBI nr
Match: gi|1009151438|ref|XP_015893552.1| (PREDICTED: costars family protein-like [Ziziphus jujuba])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 68  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEIVLKAIPTTEVA 127
           VTFGVLFNDD+CANIFEALVGTLRAAKKRK++TYDGELLLQGVHDNVEI+LK  PTT  A
Sbjct: 28  VTFGVLFNDDKCANIFEALVGTLRAAKKRKVLTYDGELLLQGVHDNVEIILKPPPTTSTA 87

Query: 128 STAA 132
           + AA
Sbjct: 88  TVAA 91

The following BLAST results are available for this feature:

BLAST of Lsi03G009770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COSA_PICSI	2.9e-21	89.47	Costars family protein WS02710_H03 OS=Picea sitchensis PE=3 SV=1	[more]
COSA_ORYSJ	4.3e-20	81.67	Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1	[more]
COSA_ORYSI	4.3e-20	81.67	Costars family protein OS=Oryza sativa subsp. indica GN=OsI_012692 PE=3 SV=1	[more]
COSA_ARATH	1.2e-19	72.06	Costars family protein At4g33640 OS=Arabidopsis thaliana GN=At4g33640 PE=1 SV=1	[more]
COSA_EUTHA	6.1e-19	77.78	Costars family protein ST45-2 OS=Eutrema halophilum PE=3 SV=1	[more]

BLAST of Lsi03G009770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI0_CUCSA	9.5e-27	95.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182240 PE=4 SV=1	[more]
A0A067KCM6_JATCU	3.5e-21	83.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18762 PE=4 SV=1	[more]
A0A061E247_THECC	4.6e-21	84.13	C6orf115, putative OS=Theobroma cacao GN=TCM_007362 PE=4 SV=1	[more]
B9HEA7_POPTR	4.6e-21	80.88	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03140g PE=4 SV=1	[more]
B9S9L9_RICCO	6.0e-21	85.71	Protein C6orf115, putative OS=Ricinus communis GN=RCOM_0886770 PE=4 SV=1	[more]

BLAST of Lsi03G009770 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33640.1	7.0e-21	72.06	unknown protein	[more]

BLAST of Lsi03G009770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692368\|ref\|XP_011653450.1\|	1.4e-26	95.59	PREDICTED: costars family protein [Cucumis sativus]	[more]
gi\|700198735\|gb\|KGN53893.1\|	1.4e-26	95.59	hypothetical protein Csa_4G182240 [Cucumis sativus]	[more]
gi\|659108934\|ref\|XP_008454461.1\|	5.2e-26	94.12	PREDICTED: costars family protein [Cucumis melo]	[more]
gi\|1009151411\|ref\|XP_015893539.1\|	1.0e-21	84.38	PREDICTED: costars family protein ST45-2-like [Ziziphus jujuba]	[more]
gi\|1009151438\|ref\|XP_015893552.1\|	1.0e-21	84.38	PREDICTED: costars family protein-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027817	Costars_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009770.1	Lsi03G009770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027817	Costars domain	PFAM	PF14705	Costars	coord: 65..118 score: 2.5
IPR027817	Costars domain	SMART	SM01283	Costars_2	coord: 1..119 score: 5.9
None	No IPR available	unknown	Coil	Coil	coord: 3..23 scor
None	No IPR available	PANTHER	PTHR22739	STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED	coord: 68..131 score: 7.7E-42coord: 1..27 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G009770	Csa4G182240	Cucumber (Chinese Long) v2	culsiB280
Lsi03G009770	CSPI04G11830	Wild cucumber (PI 183967)	cpilsiB279
Lsi03G009770	Cucsa.331860	Cucumber (Gy14) v1	cgylsiB538
Lsi03G009770	CmaCh16G002780	Cucurbita maxima (Rimu)	cmalsiB307
Lsi03G009770	CmoCh16G002980	Cucurbita moschata (Rifu)	cmolsiB294
Lsi03G009770	Cla006495	Watermelon (97103) v1	lsiwmB240
Lsi03G009770	MELO3C018053	Melon (DHL92) v3.5.1	lsimeB269
Lsi03G009770	ClCG10G009640	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G009770	MELO3C018053.2	Melon (DHL92) v3.6.1	lsimedB282
Lsi03G009770	Cla97C10G192710	Watermelon (97103) v2	lsiwmbB218
Lsi03G009770	Bhi11G000869	Wax gourd	lsiwgoB292
Lsi03G009770	CsGy4G011250	Cucumber (Gy14) v2	cgyblsiB260
Lsi03G009770	Carg19726	Silver-seed gourd	carlsiB269

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G009770	Melon (DHL92) v3.6.1	lsimedB265
Lsi03G009770	Silver-seed gourd	carlsiB263
Lsi03G009770	Silver-seed gourd	carlsiB341
Lsi03G009770	Cucumber (Chinese Long) v3	cuclsiB301
Lsi03G009770	Cucumber (Chinese Long) v3	cuclsiB554
Lsi03G009770	Cucumber (Gy14) v1	cgylsiB366
Lsi03G009770	Cucurbita maxima (Rimu)	cmalsiB115
Lsi03G009770	Cucurbita maxima (Rimu)	cmalsiB483
Lsi03G009770	Cucurbita maxima (Rimu)	cmalsiB657
Lsi03G009770	Cucurbita moschata (Rifu)	cmolsiB108
Lsi03G009770	Cucurbita moschata (Rifu)	cmolsiB467
Lsi03G009770	Cucurbita moschata (Rifu)	cmolsiB646
Lsi03G009770	Cucurbita pepo (Zucchini)	cpelsiB168
Lsi03G009770	Cucurbita pepo (Zucchini)	cpelsiB207
Lsi03G009770	Cucurbita pepo (Zucchini)	cpelsiB340
Lsi03G009770	Cucurbita pepo (Zucchini)	cpelsiB548
Lsi03G009770	Wild cucumber (PI 183967)	cpilsiB534
Lsi03G009770	Cucumber (Chinese Long) v2	culsiB520
Lsi03G009770	Melon (DHL92) v3.5.1	lsimeB253
Lsi03G009770	Cucumber (Gy14) v2	cgyblsiB487