Lsi03G009080 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G009080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPolygalacturonase
Locationchr03 : 16731797 .. 16734307 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTCTTCAATTTACCTACCTTTGCTACTCCGTTAACATTCAACGTTGTCAATTTTGGAGCCAAACCCAACAACCCCAAAATCGACTCATCGAAGGCCTTCCAATTGGCATGGATGTGTGCTTGTACCTCTGCTACACCGACATCCATTTATGTGCCTAACACCAAATTCTACGTTTACAGTGCAACTTTTAATGGGCCATGCAATAATAATGCCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCGGACTTCCATCTCACTAGCAACTCTGAAAATTGGATCATTTTTCACAATATTAATGGAGTTGCTGTCTTGGGTGGCGTTATTGATGGCCGAGGATCTGGGCTTTGGGCTTGCAAAAACTCTGGCAAGACCTGTCCTCATGGAGCCACGGTATACAAACTTTACCAACTTTATGTCTATTAATATTTTGTTAGCATCTAGGTTGAACTTATATTTCTTTCACGCACACCAACAAAAAAAATATTTTAATTAAAAAAATACTTGAGTACATCTCGAGATGCATTTATATTTGTGCAACCCACCCAATAGCAATGGCCTAATCACAATTTGTGATGTAACAAACTTCTTTTTCTTTTTTTTAAAAAAAAATATTTTTGAACTTTTTTTATATGATTAGCGAGAGCTACAAGAAGACAGGTGCAACGTATTACGCATATTTAAACTATAAGAAATAAGAGTTTATCATGTAATAAACTCTAGTTAGACAACTAAATAGGTGCACACACGTACACTAAATTAATTTATCTTTTGAAAATTAAATATGTATCAAATAACATGATTGTATTTTTTTTAAAAGAAAAGAATTAAACACAAAATAAAGGATACTATTTTAAAAAAATTAAAATTATTATACGTGATTTATTATTGTCATGATTAGGCATACTTTCCTTCCCTTTACACTGAATTCACTCTCTAATATAAAAAGAACTATTGTGTTTTGTGCAATCATTAGAATTTACCAATTTCCAAAACATATTAGTTAGTGGATTAACTTTACTGAATAGCCAAATGTTTCACGTAGTAGTAAACCAGTGTCATAATGTAAAAATGCAAGAACTAAAGGTTTCGGCCCCTGGCAATAGCCCGAACACTGATGGAATTCACGTAGGCGGATCATCTCATGTCACTATCCTCAACTCCAATATCGGCACTGGTGACGACTGCATCTCAATAGGCCCTGGCACTTCCAACTTATGGATTGAGAATATTGTTTGTGGACCTGGCCATGGAATTAGGTAAGTAGTCACTTGTTAAATTTTTATCAGTTATTTGAGGTTTTTTTGTGGATAATTTTGATTTGATTGATGCAGCATTGGGAGTTTAGGAAAAGGGTCAAAGGAGGACGGCGTTGAGAACGTGACGGTAAAATCATGTAGATTTATGAACACTCAAAATGGGGTGAGAATAAAGAGTTGGGGAAGGCCAAGTAGTGGGTTTGCAAGAAATATACATTTTCAACATATTACAATGACTAATGTCCAAAATCCTATTATCATCGATCAAAATTATTGTCCCCATAATCAAGGTTGCCCTGGACAGGTGCGTCTCGTACGATTGTTAATCCTATCGTCTTTTTTTATTGCTATTATTATCTTCGACTCATTATGCTCTCTTTTGGAAAAAAAAAATTATTTGCATAGACAGAAATAAAAAATATCAAATTCCTACCAAGATAACTGAAAGTTTCCACAAATAAAAATCTTAATGAACCTAAAAAAGATTAAACCCAACATAAATTGCTTATTTTTGGAGATTCATTCGTATTCATTCGTATATATATCTATTTATATATACAAACAAAGGGGTATATATAAATCTATAATTTTATGTCAAATGACGTTTTGATTCAATTAAATACACAATGTTGACGTCATTCATTAATTTGAAATATATATTGATTTTTAAAACTCTATCTTTCCCGTATGTTTAGTATATTAAGTTTTGAGTAAAAAAAATATGACTTTAGTATTTGATATTGATCAGAGATAAAAAGGTTTTAGGTTTTAGGTTTAAAACTCGAATTTTGGTCATTTTTAACGAAGAAAATATTTAGTCTTTAAATATTTAAGGAACTTCAATTTGTAATGATTCATTCCTTTTACTTTTAAAAAGATTTTTCAGAAAAAAAAATCAATAACTAAAATTTAATTAAATTGACTTGCAGTCCTTTTTTTAAATTAGACAAAGATTTAATTCCTCATCCATATAATTGTTGTACTAAAATTTAATTAAATTCGGTTGTTTGTGAATGAATAGGATTCTAGAATTAAAGTTAGCAATGTGACATATGAAGATATTCACCGGACATCGAACACGCAAGTGGCCATGAAATTTGATTGTAGTCCAAAATTTCCATGCAAAGGAATAAGGTTGGAGGATGTTAAGCTTACTTACAAGAATCAAGTAGCCAAAGCTTCATGTAGTAATGCTCAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG

mRNA sequence

ATGACGTTCTTCAATTTACCTACCTTTGCTACTCCGTTAACATTCAACGTTGTCAATTTTGGAGCCAAACCCAACAACCCCAAAATCGACTCATCGAAGGCCTTCCAATTGGCATGGATGTGTGCTTGTACCTCTGCTACACCGACATCCATTTATGTGCCTAACACCAAATTCTACGTTTACAGTGCAACTTTTAATGGGCCATGCAATAATAATGCCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCGGACTTCCATCTCACTAGCAACTCTGAAAATTGGATCATTTTTCACAATATTAATGGAGTTGCTGTCTTGGGTGGCGTTATTGATGGCCGAGGATCTGGGCTTTGGGCTTGCAAAAACTCTGGCAAGACCTGTCCTCATGGAGCCACGGTTTCGGCCCCTGGCAATAGCCCGAACACTGATGGAATTCACGTAGGCGGATCATCTCATGTCACTATCCTCAACTCCAATATCGGCACTGGTGACGACTGCATCTCAATAGGCCCTGGCACTTCCAACTTATGGATTGAGAATATTGTTTGTGGACCTGGCCATGGAATTAGCATTGGGAGTTTAGGAAAAGGGTCAAAGGAGGACGGCGTTGAGAACGTGACGGATTCTAGAATTAAAGTTAGCAATGTGACATATGAAGATATTCACCGGACATCGAACACGCAAGTGGCCATGAAATTTGATTGTAGTCCAAAATTTCCATGCAAAGGAATAAGGTTGGAGGATGTTAAGCTTACTTACAAGAATCAAGTAGCCAAAGCTTCATGTAGTAATGCTCAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG

Coding sequence (CDS)

ATGACGTTCTTCAATTTACCTACCTTTGCTACTCCGTTAACATTCAACGTTGTCAATTTTGGAGCCAAACCCAACAACCCCAAAATCGACTCATCGAAGGCCTTCCAATTGGCATGGATGTGTGCTTGTACCTCTGCTACACCGACATCCATTTATGTGCCTAACACCAAATTCTACGTTTACAGTGCAACTTTTAATGGGCCATGCAATAATAATGCCATTACTATACGTATTGATGGTACTCTCGTGGCTCCCTCGGACTTCCATCTCACTAGCAACTCTGAAAATTGGATCATTTTTCACAATATTAATGGAGTTGCTGTCTTGGGTGGCGTTATTGATGGCCGAGGATCTGGGCTTTGGGCTTGCAAAAACTCTGGCAAGACCTGTCCTCATGGAGCCACGGTTTCGGCCCCTGGCAATAGCCCGAACACTGATGGAATTCACGTAGGCGGATCATCTCATGTCACTATCCTCAACTCCAATATCGGCACTGGTGACGACTGCATCTCAATAGGCCCTGGCACTTCCAACTTATGGATTGAGAATATTGTTTGTGGACCTGGCCATGGAATTAGCATTGGGAGTTTAGGAAAAGGGTCAAAGGAGGACGGCGTTGAGAACGTGACGGATTCTAGAATTAAAGTTAGCAATGTGACATATGAAGATATTCACCGGACATCGAACACGCAAGTGGCCATGAAATTTGATTGTAGTCCAAAATTTCCATGCAAAGGAATAAGGTTGGAGGATGTTAAGCTTACTTACAAGAATCAAGTAGCCAAAGCTTCATGTAGTAATGCTCAAGGATTTGATGTTGGCTTGGTTCAGCCTATGGGTTGCTTTTAG

Protein sequence

MTFFNLPTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCNNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKNSGKTCPHGATVSAPGNSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENVTDSRIKVSNVTYEDIHRTSNTQVAMKFDCSPKFPCKGIRLEDVKLTYKNQVAKASCSNAQGFDVGLVQPMGCF
Homology
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BLAST of Lsi03G009080 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-45
Identity = 106/208 (50.96%), Postives = 121/208 (58.17%), Query Frame = 1 

Query: 133 GATVSAPGNSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGI 192
           G  VS  GNSPNTDGIHV  SS VTILNS I TGDDC+SIGPGTSNLWIE + CGPGHGI
Sbjct: 185 GVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGI 244

Query: 193 SIGSLGKGSKED-------------------------------------------GVEN- 252
           SIGSLGK  +E                                             VEN 
Sbjct: 245 SIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENP 304

Query: 253 -VTD--------------SRIKVSNVTYEDIHRTSNTQVAMKFDCSPKFPCKGIRLEDVK 282
            V D              S +++S+VTYEDIH TS T+VA+KFDCSPK PC+ I+LEDVK
Sbjct: 305 IVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVK 364

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BLAST of Lsi03G009080 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-37
Identity = 114/359 (31.75%), Postives = 164/359 (45.68%), Query Frame = 1 

Query: 12  PLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNG-PCN 71
           P T NV+++GAKP+  K DS+KAF  AW  AC SA PT+I VP  +F V +  F+G  C 
Sbjct: 30  PSTLNVLSYGAKPDGSK-DSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECK 89

Query: 72  NNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKNS-GKT 131
              I+IRI G++VAP DF + ++S++WI F ++  V++ GG++D +G+ LW CKN+ G  
Sbjct: 90  QAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHN 149

Query: 132 CPHGA--TVSAPGNSPNTDGIHVGGSS--HVTILNSNIGTGDDCISI-----GPGTSNLW 191
           CP GA   V +  N+    G+    S   H+ I NSN     D + +      P T  + 
Sbjct: 150 CPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSN-NVNIDGVKVSADENSPNTDGIH 209

Query: 192 IEN-------------------------------IVCGPGHGISIGSLGKGSKEDGVENV 251
           +E+                               I CGPGHGISIGSLG+  +E GV+NV
Sbjct: 210 VESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNV 269

Query: 252 T--------------------DSRIKVSNVTYEDIH--RTSNTQVAMK------------ 271
           T                    DS     N+ ++ I+     N  +  +            
Sbjct: 270 TVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQE 329

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BLAST of Lsi03G009080 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.3e-30
Identity = 100/261 (38.31%), Postives = 128/261 (49.04%), Query Frame = 1 

Query: 12  PLTFNVV-NFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCN 71
           P  F+VV  FGAK +  K D SK F  AW  AC S TP+++ +P   + +      GPC 
Sbjct: 26  PDAFDVVAKFGAKADG-KTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPC- 85

Query: 72  NNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVL-GGVIDGRGSGLW---ACKN- 131
              I I + GT+ AP+D        NW+ F+++    +  GG+ DG+GS  +    C+N 
Sbjct: 86  KAPIEINVQGTIQAPAD-PSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENR 145

Query: 132 ------------------------SGKTCPHGATVSAPGN-------------SPNTDGI 191
                                   S  +      V A  N             SPNTDGI
Sbjct: 146 EFRSKLPVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGI 205

Query: 192 HVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVEN 230
           H+G S  V I+ S+I TGDDCISIG GT N+ I+ I CGPGHGISIGSLGK   E+ VE 
Sbjct: 206 HMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEG 265

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BLAST of Lsi03G009080 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-30
Identity = 97/255 (38.04%), Postives = 124/255 (48.63%), Query Frame = 1 

Query: 17  VVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCNNNAITI 76
           V  FGAK +  K D SK F  AW  AC S TP+++ +P   + +      GPC    I I
Sbjct: 32  VAKFGAKADG-KTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPC-KAPIEI 91

Query: 77  RIDGTLVAPSDFHLTSNSENWIIFHNINGVAVL-GGVIDGRGSGLW---ACKN------- 136
            + GT+ AP+D        NW+ F+++    +  GG+ DG+GS  +    C+N       
Sbjct: 92  NVQGTIQAPAD-PSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKL 151

Query: 137 ------------------SGKTCPHGATVSAPGN-------------SPNTDGIHVGGSS 196
                             S  +      V A  N             SPNTDGIH+G S 
Sbjct: 152 PVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSE 211

Query: 197 HVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENVTDSRI 230
            V I+ S+I TGDDCISIG GT N+ I+ I CGPGHGISIGSLGK   E+ VE      I
Sbjct: 212 GVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEG-----I 271

[Close]
BLAST of Lsi03G009080 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.0e-29
Identity = 105/317 (33.12%), Postives = 143/317 (45.11%), Query Frame = 1 

Query: 15  FNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCNNNAI 74
           F++  +GA  N    D S+A   A+  AC S +P++I +P   F +      GPC +  +
Sbjct: 27  FDITKYGANSN---ADISEALLNAFKEACQSTSPSTIVIPKGTFTMNQVKLEGPCKS-PL 86

Query: 75  TIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGG-VIDGRGSGLWACKNSGK--TCP 134
            ++I  TL APSD       E W+  + ++   + GG ++DG+ +  W CK S K    P
Sbjct: 87  ELQIQATLKAPSDPSQLKVGE-WLTVNKLDQFTMSGGGILDGQAAAAWECKQSKKCNKLP 146

Query: 135 HGAT------------------------------------VSAPGNSPNTDGIHVGGSSH 194
           +  +                                    VSAP NSPNTDGIHV  SS 
Sbjct: 147 NNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSS 206

Query: 195 VTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENV------ 254
           V I +SN  TGDDCIS+G  T  L+I  + CGPGHGIS+GSLG    E  V  V      
Sbjct: 207 VNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCT 266

Query: 255 ---TDS--RIK---------VSNVTYEDI--HRTSNTQVAMKFDCSPKFPCKGIRLEDVK 271
              TD+  RIK         V++V +EDI     SN  V  +  C P   C       VK
Sbjct: 267 FTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQVYC-PFNKCNKDLPSQVK 326

[Close]
BLAST of Lsi03G009080 vs. TrEMBL
Match: A0A0D2TSR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G004000 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.1e-80
Identity = 156/306 (50.98%), Postives = 193/306 (63.07%), Query Frame = 1 

Query: 15  FNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCNNNAI 74
           +NV+NFGAKPN  K DS+KAF +AW  AC SA  T IYVP  ++ + S  F G C +  I
Sbjct: 30  YNVLNFGAKPNG-KTDSTKAFLMAWKAACASADSTIIYVPKGRYLLGSMAFQGGCKSPQI 89

Query: 75  TIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKNSGKTCPHGA 134
             RIDGTLVAP D+ +   S +W+ F  +NGV++LGG +D +G  LWACK S   CP GA
Sbjct: 90  IFRIDGTLVAPQDYRVLGKSADWLSFEGVNGVSILGGALDAKGPSLWACKASHSNCPSGA 149

Query: 135 T---------------------------------------VSAPGNSPNTDGIHVGGSSH 194
           T                                       + A GNSPNTDGIHV  S +
Sbjct: 150 TTLSFTNSKNIRIRSLLSLNSQMFHIVINGCENVNVQGVRIIAAGNSPNTDGIHVQSSKN 209

Query: 195 VTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENVTDSRIK 254
           V I+  +I TGDDCISIGPGT NLWIE I CGPGHGISIGSL K  KE+GV+NVT S IK
Sbjct: 210 VNIIKCSIKTGDDCISIGPGTKNLWIEQITCGPGHGISIGSLAKDLKEEGVQNVTVSGIK 269

Query: 255 VSNVTYEDIHRTSNTQVAMKFDCSPKFPCKGIRLEDVKLTYKNQVAKASCSNAQGFDVGL 282
           + ++ YE I  TS+T+VA+KFDCSPK PC GIRL++V L+Y N+ A++SCSN +G  + L
Sbjct: 270 IKDIIYEGIRGTSSTEVAIKFDCSPKNPCTGIRLQNVNLSYLNKPAQSSCSNVRGKALNL 329

[Close]
BLAST of Lsi03G009080 vs. TrEMBL
Match: A0A067KAH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13539 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.7e-62
Identity = 147/358 (41.06%), Postives = 192/358 (53.63%), Query Frame = 1 

Query: 10  ATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPC 69
           A   ++NV+ +GAKP+  + +S++AF  AW  AC S  P +I++P  K+ +    F GPC
Sbjct: 2   AATQSYNVITYGAKPDG-RTNSAQAFISAWSQACESKEPATIHIPKGKYLLTKLVFRGPC 61

Query: 70  NNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVID------------GRG 129
            NNAI   IDGTL+APSD+ + +N+E+WI   +++ V+V GG++D            G+ 
Sbjct: 62  KNNAIVFVIDGTLLAPSDYRIIANAEDWIELEHVSNVSVFGGILDANGSQLWSCKNSGKN 121

Query: 130 --SGLWACK---------------NSGKT------CPH----GATVSAPGNSPNTDGIHV 189
             SG  + K               NS K       C +    G  +SA G SPNTDGIHV
Sbjct: 122 CLSGATSLKFTNSNNILIKGLTSLNSQKIHIVIFECQNVKLQGLNISASGESPNTDGIHV 181

Query: 190 GGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGV---- 249
            GSS VTILNS IGTGDDC+S+GP TSNLW++N+VCGPGHGISIGSLG   +E+GV    
Sbjct: 182 QGSSGVTILNSTIGTGDDCVSVGPATSNLWVQNVVCGPGHGISIGSLGNDLQENGVQNVT 241

Query: 250 ------------------------------------ENVT------------------DS 271
                                                NV                   DS
Sbjct: 242 ITSCTLSGTANGVRIKTWGRRSNSFAGNILFQHILMNNVQNPIVIHQNYCPHHNCPNQDS 301

[Close]
BLAST of Lsi03G009080 vs. TrEMBL
Match: Q9M1Y9_ARATH (Polygalacturonase-like protein OS=Arabidopsis thaliana GN=F24G16.120 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 5.5e-61
Identity = 142/362 (39.23%), Postives = 187/362 (51.66%), Query Frame = 1 

Query: 14  TFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGP-CNNN 73
           T+N++++GAKP+  K DS+KAF + W  AC S  P +I VP  +F + S  F+G  C   
Sbjct: 22  TYNILSYGAKPDG-KTDSTKAFTVLWAKACASVKPVTILVPKGRFLLRSIIFDGSKCKRK 81

Query: 74  AITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKNSGKTCPH 133
           ++T RI GTLVAPSD+ +      WI+F +++G++V GGV+D +G+ LW+CK SGK CP 
Sbjct: 82  SVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGVLDAQGASLWSCKKSGKNCPS 141

Query: 134 GAT----------------------------------VSAPGNSPNTDGIHVGGSSHVTI 193
           GAT                                  VSA GNSPNTDGIHV  SS V+I
Sbjct: 142 GATSSRNVVISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDGIHVQSSSTVSI 201

Query: 194 LNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENVT-------- 253
           LNS I TGDDC+SIGPGT+ LWIEN+ CGPGHGISIGSLGK S E GV+N+T        
Sbjct: 202 LNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKESVEVGVQNITVKTATFTG 261

Query: 254 ---DSRIK---------VSNVTYED--IHRTSNTQVAMKFDCSPKFPCK----------- 282
                RIK           N+ ++   ++   N  V  +  C     C            
Sbjct: 262 TENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDV 321

[Close]
BLAST of Lsi03G009080 vs. TrEMBL
Match: B5TQZ7_CARPA (Ripening-induced polygalacturonase OS=Carica papaya PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-60
Identity = 151/374 (40.37%), Postives = 191/374 (51.07%), Query Frame = 1 

Query: 7   PTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSA-TF 66
           P+ AT  T NVV +GAKP     DS +AF  AW  AC SA P ++YVP  KF +     F
Sbjct: 25  PSSATS-THNVVAYGAKPGGTT-DSRQAFLSAWKNACASARPATLYVPRGKFLLAGRIVF 84

Query: 67  NGPCNNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKN 126
           +G C N+ + +RIDGTLVAP+D+ +  +   W++F N+NG++V GGV+DGRGSGLW CK 
Sbjct: 85  DGECRNSKMVVRIDGTLVAPADYRVLKDGGYWVLFQNVNGLSVYGGVLDGRGSGLWDCKK 144

Query: 127 SGKTCPHGATVS---------------------------------------APGNSPNTD 186
           +G +CP GAT                                         A G SPNTD
Sbjct: 145 AGHSCPFGATSIGFLNSRNIVIDGLTSLNSQVFHIVIYGCNNVKLQGTKVSASGVSPNTD 204

Query: 187 GIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGV 246
           GIHV  SSHVTIL+S I TGDDC+SIGPGTS LWIEN+ CGPGHGIS+GSLGK S E GV
Sbjct: 205 GIHVQMSSHVTILSSTIATGDDCVSIGPGTSTLWIENMACGPGHGISVGSLGKYSNEPGV 264

Query: 247 ENVT-----------DSRIK---------VSNVTYEDI--HRTSNTQVAMKFDCSPKFPC 282
           +NVT            +RIK           N+ ++ +  +   N  V  +  C     C
Sbjct: 265 QNVTVKSVSFTGTQNGARIKSWGRPSNGFAKNIIFQHVTMNNVQNPIVIDQNYCPGNVRC 324

[Close]
BLAST of Lsi03G009080 vs. TrEMBL
Match: A0A0B2QJV0_GLYSO (Polygalacturonase OS=Glycine soja GN=glysoja_029507 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.6e-60
Identity = 151/342 (44.15%), Postives = 184/342 (53.80%), Query Frame = 1 

Query: 14  TFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCNNNA 73
           T+NVVNFGAK +  K DS+KAF  AW  AC S  P SIYVP  KF + S TFNG CNN  
Sbjct: 33  TYNVVNFGAKSDG-KTDSTKAFLNAWSKACASTNPASIYVPQGKFLLKSVTFNGKCNNKG 92

Query: 74  ITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLG------------GVIDGRGSGLW 133
           I+I IDGTLVAPSD+ +T ++  W+ F  ++GV++ G            G +    S ++
Sbjct: 93  ISITIDGTLVAPSDYSVTGSAGTWLEFERVDGVSIRGTLAFTNSNNIAIGGLTSMNSQMF 152

Query: 134 ACKNSG--KTCPHGATVSAPGNSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNL 193
               +G       G  V A GNSPNTDGIHV  SSH+TILNS I TGDDCIS+GPGT+NL
Sbjct: 153 HIVFNGCQNVKLQGVKVLADGNSPNTDGIHVQMSSHITILNSKIRTGDDCISVGPGTTNL 212

Query: 194 WIENIVCGPGHGISIGSLGKGSKEDGVENVT-----------DSRIK---------VSNV 253
           WIENI CGPGHGISIGSLGK  KE GV+NVT             RIK         V NV
Sbjct: 213 WIENIACGPGHGISIGSLGKDLKEAGVQNVTVKTVTFTGTQNGVRIKTWGRPSNGFVRNV 272

Query: 254 TYED--IHRTSNTQVAMKFDCSPKFPC----KGIRLED---------------------- 283
            ++D  +    N  +  +  C     C     G+++ D                      
Sbjct: 273 LFQDAIMVNVENPVIIDQNYCPNNKGCPDQASGVKVSDVTYQDIHGTSATHVAVKFDCSS 332

[Close]
BLAST of Lsi03G009080 vs. TAIR10
Match: AT2G43890.1 (AT2G43890.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-50
Identity = 126/378 (33.33%), Postives = 180/378 (47.62%), Query Frame = 1 

Query: 2   TFFNLPTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVY 61
           +F  + +      +NVV+FGAKP+  + DS+KAF  AW  AC SA   ++ VP   F + 
Sbjct: 16  SFLLMKSSTAASNYNVVSFGAKPDG-RTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLK 75

Query: 62  SATFNGPCNNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLW 121
              F GPC +  IT +I GT+VAPSD+    NS  WI+F  +N ++++GG +D RG+  W
Sbjct: 76  PVEFRGPCRSR-ITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFW 135

Query: 122 ACKNSGKTCPHGA--------------------------TVSAPGN---------SP--- 181
           AC+ SGK+CP GA                           +++  N         +P   
Sbjct: 136 ACRKSGKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQS 195

Query: 182 -NTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSK 241
            NTDG+HV GS+ VT+ +    TGDDCISIGPGT NL++  + CGPGHGISIGSLG+ + 
Sbjct: 196 PNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRDAN 255

Query: 242 EDGVENVT-----------DSRIK---------VSNVTYEDI--HRTSNTQVAMKFDCSP 282
           E GVEN+T             RIK         V NV ++++      N  +  +  C  
Sbjct: 256 EAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPS 315

[Close]
BLAST of Lsi03G009080 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-40
Identity = 94/204 (46.08%), Postives = 113/204 (55.39%), Query Frame = 1 

Query: 133 GATVSAPGNSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGI 192
           G  V A GNSPNTDGIHV  SS V+I N+ I TGDDC+SIGPGT+ LWIEN+ CGPGHGI
Sbjct: 178 GVKVLAAGNSPNTDGIHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGI 237

Query: 193 SIGSLGKGSKE-------------------------------------------DGVEN- 252
           SIGSLGK S E                                           + VEN 
Sbjct: 238 SIGSLGKDSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENP 297

Query: 253 -VTD-------------SRIKVSNVTYEDIHRTSNTQVAMKFDCSPKFPCKGIRLEDVKL 279
            + D             S IK+S+V + DIH TS T+V +K DCS K PC GIRLEDVKL
Sbjct: 298 IIIDQNYCPDHDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKL 357

[Close]
BLAST of Lsi03G009080 vs. TAIR10
Match: AT2G43860.1 (AT2G43860.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-38
Identity = 114/359 (31.75%), Postives = 164/359 (45.68%), Query Frame = 1 

Query: 12  PLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNG-PCN 71
           P T NV+++GAKP+  K DS+KAF  AW  AC SA PT+I VP  +F V +  F+G  C 
Sbjct: 30  PSTLNVLSYGAKPDGSK-DSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECK 89

Query: 72  NNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKNS-GKT 131
              I+IRI G++VAP DF + ++S++WI F ++  V++ GG++D +G+ LW CKN+ G  
Sbjct: 90  QAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHN 149

Query: 132 CPHGA--TVSAPGNSPNTDGIHVGGSS--HVTILNSNIGTGDDCISI-----GPGTSNLW 191
           CP GA   V +  N+    G+    S   H+ I NSN     D + +      P T  + 
Sbjct: 150 CPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSN-NVNIDGVKVSADENSPNTDGIH 209

Query: 192 IEN-------------------------------IVCGPGHGISIGSLGKGSKEDGVENV 251
           +E+                               I CGPGHGISIGSLG+  +E GV+NV
Sbjct: 210 VESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNV 269

Query: 252 T--------------------DSRIKVSNVTYEDIH--RTSNTQVAMK------------ 271
           T                    DS     N+ ++ I+     N  +  +            
Sbjct: 270 TVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQE 329

[Close]
BLAST of Lsi03G009080 vs. TAIR10
Match: AT1G05650.1 (AT1G05650.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 148.3 bits (373), Expect = 7.2e-36
Identity = 115/380 (30.26%), Postives = 168/380 (44.21%), Query Frame = 1 

Query: 1   MTFFNLPTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYV 60
           +TF ++ + A+ + FNVV+FGAKP+    DS+ AF  AW  AC SA   ++ VP   F +
Sbjct: 15  LTFIDVSSSAS-IVFNVVSFGAKPDG-VTDSTAAFLKAWQGACGSAASATVVVPTGTFLL 74

Query: 61  YSATFNGPCNNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGL 120
              TF GPC +  IT ++ GT+VAP D+    NS +WI+F+ +N  +++GG  D RGSG 
Sbjct: 75  KVITFGGPCKSK-ITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVGGTFDARGSGF 134

Query: 121 WACKNSGKTCPHGA----------TVSAPGNSPNTDGIH--VGGSSHVTILNSN-IGTGD 180
           W+C+ SG+ CP G            + +   S N+   H  + G ++V + N   +  GD
Sbjct: 135 WSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPGD 194

Query: 181 D------CISIGPGTS--------------------NLWIENIVCGPGHGISIGSLGKGS 240
                   +    G +                    N  I  + CGPGHG+SIGSL K  
Sbjct: 195 SPNTDGFTVQFSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGVSIGSLAKQL 254

Query: 241 KEDGVENVTDS-----------RIK---------VSNVTYEDI--HRTSNTQVAMKFDCS 282
            EDGVENVT S           RIK         V NV ++++      N  +  +  C 
Sbjct: 255 NEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYCP 314

[Close]
BLAST of Lsi03G009080 vs. TAIR10
Match: AT2G26620.1 (AT2G26620.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-33
Identity = 117/375 (31.20%), Postives = 158/375 (42.13%), Query Frame = 1 

Query: 12  PLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTS-IYVPNTKFYVYSATFNGPCN 71
           P  FNV   G+KP+  K D++ AF   W  AC   + +S IYVP   FY+    F GPC 
Sbjct: 28  PKVFNVQRHGSKPDG-KTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCK 87

Query: 72  NNAITIRIDGTLVA---PSD--------FHLTSN-------------SENWIIFH----- 131
           N  I   IDGTL+A   P+D        F   +N              ++W +       
Sbjct: 88  N-PIEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNP 147

Query: 132 NINGVAVLGGVIDGRGSGLWACKNSGKTCPH------------GATVSAPGNSPNTDGIH 191
           N   +A+  G      S +    +      H            G T++AP +SPNTDGI 
Sbjct: 148 NCPKLAISMGFAFVNNSNIKDITSLNSKMGHFNFFFVHHFNITGVTITAPSDSPNTDGIK 207

Query: 192 VGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENV 251
           +G  S++ I N+NIGTGDDCI+I  GT+ L I NI CGPGHGIS+GSLGK   E  V+++
Sbjct: 208 MGSCSNIQISNTNIGTGDDCIAILSGTTKLNISNINCGPGHGISVGSLGKNKDEKDVKDL 267

Query: 252 ---------------------TDSRIKVSNVTYEDI-----------------------H 282
                                + S+I VSN  YE+I                        
Sbjct: 268 FVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHE 327

[Close]
BLAST of Lsi03G009080 vs. NCBI nr
Match: gi|763811681|gb|KJB78533.1| (hypothetical protein B456_013G004000 [Gossypium raimondii])

HSP 1 Score: 308.1 bits (788), Expect = 1.5e-80
Identity = 156/306 (50.98%), Postives = 193/306 (63.07%), Query Frame = 1 

Query: 15  FNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPCNNNAI 74
           +NV+NFGAKPN  K DS+KAF +AW  AC SA  T IYVP  ++ + S  F G C +  I
Sbjct: 30  YNVLNFGAKPNG-KTDSTKAFLMAWKAACASADSTIIYVPKGRYLLGSMAFQGGCKSPQI 89

Query: 75  TIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGLWACKNSGKTCPHGA 134
             RIDGTLVAP D+ +   S +W+ F  +NGV++LGG +D +G  LWACK S   CP GA
Sbjct: 90  IFRIDGTLVAPQDYRVLGKSADWLSFEGVNGVSILGGALDAKGPSLWACKASHSNCPSGA 149

Query: 135 T---------------------------------------VSAPGNSPNTDGIHVGGSSH 194
           T                                       + A GNSPNTDGIHV  S +
Sbjct: 150 TTLSFTNSKNIRIRSLLSLNSQMFHIVINGCENVNVQGVRIIAAGNSPNTDGIHVQSSKN 209

Query: 195 VTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGVENVTDSRIK 254
           V I+  +I TGDDCISIGPGT NLWIE I CGPGHGISIGSL K  KE+GV+NVT S IK
Sbjct: 210 VNIIKCSIKTGDDCISIGPGTKNLWIEQITCGPGHGISIGSLAKDLKEEGVQNVTVSGIK 269

Query: 255 VSNVTYEDIHRTSNTQVAMKFDCSPKFPCKGIRLEDVKLTYKNQVAKASCSNAQGFDVGL 282
           + ++ YE I  TS+T+VA+KFDCSPK PC GIRL++V L+Y N+ A++SCSN +G  + L
Sbjct: 270 IKDIIYEGIRGTSSTEVAIKFDCSPKNPCTGIRLQNVNLSYLNKPAQSSCSNVRGKALNL 329

[Close]
BLAST of Lsi03G009080 vs. NCBI nr
Match: gi|985449075|ref|XP_006478561.2| (PREDICTED: polygalacturonase-like [Citrus sinensis])

HSP 1 Score: 269.6 bits (688), Expect = 6.1e-69
Identity = 157/380 (41.32%), Postives = 205/380 (53.95%), Query Frame = 1 

Query: 1   MTFFNLPTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYV 60
           +  F   + A PL++NV++FGA+P+  + DS+K+F  AW  AC SA   +IYVP  ++ +
Sbjct: 12  LILFFSSSLAIPLSYNVLSFGARPDG-RTDSAKSFLAAWAKACGSAEAATIYVPRGRYLL 71

Query: 61  YSATFNGPCNNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGL 120
           ++A F G C NN ITIRIDGTLVAP+D+H+  N+ENWI+F ++NGV++ GGV+DG+G+GL
Sbjct: 72  HNAVFQGQCKNNDITIRIDGTLVAPADYHVIGNAENWILFEHVNGVSINGGVLDGQGAGL 131

Query: 121 WACKNS-GKTCPHGAT---------------------------------------VSAPG 180
           WACK S    CP GAT                                       VSA G
Sbjct: 132 WACKKSDNSNCPSGATTLRFSNSNNVVINGLASVDSQKFHIVINGCNHVKVQGVKVSASG 191

Query: 181 NSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKG 240
           +SPNTDGIHV  SS VTIL+S IGTGDDC+S+GPG +NLWIEN+ CGPGHGISIGSLGK 
Sbjct: 192 DSPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKE 251

Query: 241 SKEDGVENVTDS-----------RIK---------VSNVTYED--IHRTSNTQVAMKFDC 282
            +E GV+NVT +           RIK           N+ ++   ++   N  +  +  C
Sbjct: 252 QQEAGVQNVTVTAVTFTGTKNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYC 311

[Close]
BLAST of Lsi03G009080 vs. NCBI nr
Match: gi|985449071|ref|XP_006478559.2| (PREDICTED: polygalacturonase-like [Citrus sinensis])

HSP 1 Score: 269.6 bits (688), Expect = 6.1e-69
Identity = 157/380 (41.32%), Postives = 205/380 (53.95%), Query Frame = 1 

Query: 1   MTFFNLPTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYV 60
           +  F   + A PL++NV++FGA+P+  + DS+K+F  AW  AC SA   +IYVP  ++ +
Sbjct: 12  LILFFSSSLAIPLSYNVLSFGARPDG-RTDSAKSFLAAWAKACGSAEAATIYVPRGRYLL 71

Query: 61  YSATFNGPCNNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVIDGRGSGL 120
           ++A F G C NN ITIRIDGTLVAP+D+H+  N+ENWI+F ++NGV++ GGV+DG+G+GL
Sbjct: 72  HNAVFQGQCKNNDITIRIDGTLVAPADYHVIGNAENWILFEHVNGVSINGGVLDGQGAGL 131

Query: 121 WACKNS-GKTCPHGAT---------------------------------------VSAPG 180
           WACK S    CP GAT                                       VSA G
Sbjct: 132 WACKKSDNSNCPSGATTLRFSNSNNVVINGLASVDSQKFHIVINGCNHVKVQGVKVSASG 191

Query: 181 NSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKG 240
           +SPNTDGIHV  SS VTIL+S IGTGDDC+S+GPG +NLWIEN+ CGPGHGISIGSLGK 
Sbjct: 192 DSPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKE 251

Query: 241 SKEDGVENVTDS-----------RIK---------VSNVTYED--IHRTSNTQVAMKFDC 282
            +E GV+NVT +           RIK           N+ ++   ++   N  +  +  C
Sbjct: 252 QQEAGVQNVTVTAVTFTGTKNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYC 311

[Close]
BLAST of Lsi03G009080 vs. NCBI nr
Match: gi|659094497|ref|XP_008448091.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 1.5e-64
Identity = 174/386 (45.08%), Postives = 196/386 (50.78%), Query Frame = 1 

Query: 1   MTFFNLPTFATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYV 60
           M F NL  F TPLTFNVV+FG KPNN + DSSKA QLAWM AC+S+ P +IYVP  KFYV
Sbjct: 19  MLFNNLAAFPTPLTFNVVDFGTKPNNAETDSSKALQLAWMHACSSSKPATIYVPKAKFYV 78

Query: 61  YSATFNGPCNNNAITIRIDGTL--------------------------------VAPSDF 120
            SATFNGPC NN ITIRIDG L                                   +  
Sbjct: 79  RSATFNGPCKNNHITIRIDGALMAPSDFHLTSNSENWILFHNVNGVTVLGGILDGQGTQL 138

Query: 121 HLTSNSENW-------IIFHNINGVAVLGGVIDGRGSGLW-----ACKNSGKTCPHGATV 180
               NS N        + F N   + V G  +    S L+      C+N       G  V
Sbjct: 139 WACKNSANTCPRGTTSLEFTNSQNILVNG--LTALNSQLYHIVVNQCRNVKM---QGLKV 198

Query: 181 SAPGNSPNTDGIHVGGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGS 240
           SA GNSPNTDGIHVG SSHVTILN+NI TGDDCISIGPG+SNLWIENI CGPGHGISIGS
Sbjct: 199 SAAGNSPNTDGIHVGDSSHVTILNTNIRTGDDCISIGPGSSNLWIENIACGPGHGISIGS 258

Query: 241 LGKGSKEDGVENVT-----------DSRIK---------VSNVTYEDIHRTSNTQVAMKF 283
           L K  KE GV+NVT             RIK           N+ ++ +  T N Q  +  
Sbjct: 259 LAKDFKEKGVQNVTVKSCKFMDTQNGVRIKSWGRQSIGFARNIRFQHLTMT-NVQNPIII 318

[Close]
BLAST of Lsi03G009080 vs. NCBI nr
Match: gi|802634125|ref|XP_012077848.1| (PREDICTED: polygalacturonase-like [Jatropha curcas])

HSP 1 Score: 247.7 bits (631), Expect = 2.5e-62
Identity = 147/358 (41.06%), Postives = 192/358 (53.63%), Query Frame = 1 

Query: 10  ATPLTFNVVNFGAKPNNPKIDSSKAFQLAWMCACTSATPTSIYVPNTKFYVYSATFNGPC 69
           A   ++NV+ +GAKP+  + +S++AF  AW  AC S  P +I++P  K+ +    F GPC
Sbjct: 2   AATQSYNVITYGAKPDG-RTNSAQAFISAWSQACESKEPATIHIPKGKYLLTKLVFRGPC 61

Query: 70  NNNAITIRIDGTLVAPSDFHLTSNSENWIIFHNINGVAVLGGVID------------GRG 129
            NNAI   IDGTL+APSD+ + +N+E+WI   +++ V+V GG++D            G+ 
Sbjct: 62  KNNAIVFVIDGTLLAPSDYRIIANAEDWIELEHVSNVSVFGGILDANGSQLWSCKNSGKN 121

Query: 130 --SGLWACK---------------NSGKT------CPH----GATVSAPGNSPNTDGIHV 189
             SG  + K               NS K       C +    G  +SA G SPNTDGIHV
Sbjct: 122 CLSGATSLKFTNSNNILIKGLTSLNSQKIHIVIFECQNVKLQGLNISASGESPNTDGIHV 181

Query: 190 GGSSHVTILNSNIGTGDDCISIGPGTSNLWIENIVCGPGHGISIGSLGKGSKEDGV---- 249
            GSS VTILNS IGTGDDC+S+GP TSNLW++N+VCGPGHGISIGSLG   +E+GV    
Sbjct: 182 QGSSGVTILNSTIGTGDDCVSVGPATSNLWVQNVVCGPGHGISIGSLGNDLQENGVQNVT 241

Query: 250 ------------------------------------ENVT------------------DS 271
                                                NV                   DS
Sbjct: 242 ITSCTLSGTANGVRIKTWGRRSNSFAGNILFQHILMNNVQNPIVIHQNYCPHHNCPNQDS 301

The following BLAST results are available for this feature:
BLAST of Lsi03G009080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_PRUPE1.2e-4550.96Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH3.6e-3731.75Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S... [more]
PGLR_GOSBA3.3e-3038.31Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_GOSHI4.2e-3038.04Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
PGLR_TOBAC8.0e-2933.12Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
BLAST of Lsi03G009080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2TSR4_GOSRA1.1e-8050.98Uncharacterized protein OS=Gossypium raimondii GN=B456_013G004000 PE=3 SV=1[more]
A0A067KAH0_JATCU1.7e-6241.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13539 PE=3 SV=1[more]
Q9M1Y9_ARATH5.5e-6139.23Polygalacturonase-like protein OS=Arabidopsis thaliana GN=F24G16.120 PE=3 SV=1[more]
B5TQZ7_CARPA1.2e-6040.37Ripening-induced polygalacturonase OS=Carica papaya PE=2 SV=1[more]
A0A0B2QJV0_GLYSO3.6e-6044.15Polygalacturonase OS=Glycine soja GN=glysoja_029507 PE=3 SV=1[more]
BLAST of Lsi03G009080 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43890.13.0e-5033.33 Pectin lyase-like superfamily protein[more]
AT2G43870.12.2e-4046.08 Pectin lyase-like superfamily protein[more]
AT2G43860.12.0e-3831.75 Pectin lyase-like superfamily protein[more]
AT1G05650.17.2e-3630.26 Pectin lyase-like superfamily protein[more]
AT2G26620.11.5e-3331.20 Pectin lyase-like superfamily protein[more]
BLAST of Lsi03G009080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763811681|gb|KJB78533.1|1.5e-8050.98hypothetical protein B456_013G004000 [Gossypium raimondii][more]
gi|985449075|ref|XP_006478561.2|6.1e-6941.32PREDICTED: polygalacturonase-like [Citrus sinensis][more]
gi|985449071|ref|XP_006478559.2|6.1e-6941.32PREDICTED: polygalacturonase-like [Citrus sinensis][more]
gi|659094497|ref|XP_008448091.1|1.5e-6445.08PREDICTED: polygalacturonase-like [Cucumis melo][more]
gi|802634125|ref|XP_012077848.1|2.5e-6241.06PREDICTED: polygalacturonase-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G009080.1Lsi03G009080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 134..210
score: 1.3E-27coord: 212..269
score: 1.3E-8coord: 43..128
score: 2.
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 183..196
scor
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 6..282
score: 5.62
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 11..126
score: 3.7E-20coord: 212..271
score: 3.6E-13coord: 132..210
score: 2.3
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..282
score: 1.5E
NoneNo IPR availablePANTHERPTHR31375:SF2POLYGALACTURONASE/PECTINASEcoord: 1..282
score: 1.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G009080CmaCh19G003200Cucurbita maxima (Rimu)cmalsiB482
Lsi03G009080CmoCh19G003590Cucurbita moschata (Rifu)cmolsiB466
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G009080Watermelon (97103) v2lsiwmbB246
Lsi03G009080Wax gourdlsiwgoB320
Lsi03G009080Cucurbita pepo (Zucchini)cpelsiB168
Lsi03G009080Cucurbita pepo (Zucchini)cpelsiB206
Lsi03G009080Watermelon (Charleston Gray)lsiwcgB211