Lsi03G008140 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G008140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionglycine-rich protein
Locationchr03 : 12283083 .. 12283643 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCACTTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTGGCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGGAAATGGGGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGAAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATTTGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTCGACGCTCCTAA

mRNA sequence

ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCACTTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTGGCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGGAAATGGGGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGAAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATTTGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTCGACGCTCCTAA

Coding sequence (CDS)

ATGGGGTGGGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGCCCACAAATGTCACTTTCTTGACATTCTCAGAGCTGCCACAGGGGAATGCAGGGGAGATCAGAAGAAACAATTCAGACAATACTACAACGGTTGAGGTCAGCAAGCGGAATGGGGGTGGCGGTGGCGGTGGCTATGGATGGGGATGGGGTGGAGGCGGCGGTGGTGGTGGAGGAAGTGGTGGTGGTGGTGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGGAAATGGGGTTGCGGAGGACAGCGAAAATCCGAGAGAGTTGGACGACGTGACGGACGGAGAAAAAATGTTAACCGAAAGAAAATGTACGACGAGAAAGATTATAGAATGGGAGAATTTGCACAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCACTTCATTGCGACGGACCTTGCTTTTATGATTGTCGATACATGTGTAAAGCTCACTGTCGACGCTCCTAA

Protein sequence

MGWENPIKLCALVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKRNGGGGGGGYGWGWGGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRRS
BLAST of Lsi03G008140 vs. TrEMBL
Match: A0A0A0K766_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G056450 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.9e-74
Identity = 161/191 (84.29%), Postives = 168/191 (87.96%), Query Frame = 1

Query: 1   MGWENPIKLCALVVFAAVIYGSRA-EGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDN 60
           MGWENPIKL ALV+ A VI GSRA EGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N
Sbjct: 1   MGWENPIKLSALVILATVISGSRAAEGLGNGSMPMNVTFLTFSELPQRNAGE-RRNSSSN 60

Query: 61  TTTVEVSKRNGGGGGGGYGWGWG---GGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQR 120
           +TTVEVSK+NGGGGGGGYGWGWG   GGGGGGGG GGGGGGWGWGGGGGGWWKWGCGGQ 
Sbjct: 61  STTVEVSKQNGGGGGGGYGWGWGSGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQP 120

Query: 121 KSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYD 180
           KSERVGRRD  G  +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYD
Sbjct: 121 KSERVGRRDDNGGSRNVKGKRMYSEKDYRMGEFAQCMVKGRCRGMRLDCPLHCGGPCFYD 180

Query: 181 CRYMCKAHCRR 186
           CRYMCKAHC R
Sbjct: 181 CRYMCKAHCNR 190

BLAST of Lsi03G008140 vs. TrEMBL
Match: A0A067KQT9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04511 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 96/185 (51.89%), Postives = 117/185 (63.24%), Query Frame = 1

Query: 9   LCALVVFAAVIYGSRAEGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVSKR 68
           L AL   A V+   +A+ + NG+   N T L    LP     +     S NTT V V+  
Sbjct: 9   LWALFFLAMVVVELKADQVKNGTAQVNATSLN---LPNNLPLDSSAQGSHNTTEVVVNNE 68

Query: 69  N-------GGGGGGGYGWGWGGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQRKSERV 128
                   GG          GGGGGGGGG GGGG GWGWGGGGGGW+KWGCGG++     
Sbjct: 69  KRYSGYYRGG----------GGGGGGGGGGGGGGSGWGWGGGGGGWYKWGCGGRKGK--- 128

Query: 129 GRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKA 187
           GR    R+ V+RK+++  +DY++GEFAQCM +GRCKGMRLDCPLHC GPCFYDC++MCKA
Sbjct: 129 GRGINNRR-VHRKRIFSNEDYKLGEFAQCMGRGRCKGMRLDCPLHCGGPCFYDCQHMCKA 176

BLAST of Lsi03G008140 vs. TrEMBL
Match: A0A0D2QJC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G196900 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-30
Identity = 77/120 (64.17%), Postives = 93/120 (77.50%), Query Frame = 1

Query: 70  GGGGGGGYGWGWGGGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRDGR-- 129
           GGGGGGGYGWGWG         GGGGGGWGWGGGGGGW+KWGCGG++  +  GR   +  
Sbjct: 98  GGGGGGGYGWGWG---------GGGGGGWGWGGGGGGWYKWGCGGRKAGKGNGRGRDKGS 157

Query: 130 --RKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR 186
             R   +RK++++++DY+MGEFAQC V+GRC+GMRLDCPLHC GPC YDC+ MCKAHCRR
Sbjct: 158 IGRNQAHRKRVFNKEDYKMGEFAQCTVRGRCRGMRLDCPLHCGGPCVYDCQNMCKAHCRR 208

BLAST of Lsi03G008140 vs. TrEMBL
Match: F6GZQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13540 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.7e-30
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 1

Query: 70  GGGGGGGYGWGWGGGGGGGGGSGGGGGGWGWGGGGGG-WWKWGCGGQRKSERVGRRDGRR 129
           GGGGGGGYGWGWGGGGGGGGG    G  WGWGGGGGG WW WGCGGQ KS     R  + 
Sbjct: 86  GGGGGGGYGWGWGGGGGGGGG----GSRWGWGGGGGGGWWGWGCGGQTKSNGGRGRGTKH 145

Query: 130 KNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR 186
           K+ +R +++  ++Y MGEFAQCMV+GRCKGMRLDCPLHC GPC YDC++MCKAHCRR
Sbjct: 146 KHWHRNRVFKNQEYVMGEFAQCMVRGRCKGMRLDCPLHCGGPCLYDCQHMCKAHCRR 198

BLAST of Lsi03G008140 vs. TrEMBL
Match: A0A067H1H4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038433mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29
Identity = 85/117 (72.65%), Postives = 95/117 (81.20%), Query Frame = 1

Query: 70  GGGGGGGYGWGWGGGGGGGGGSGGGGG-GWGWGGGGGGWWKWGCGGQRKSERVGRRDGRR 129
           GGGGGGGYGWGWGGGGGGGGG GGGGG GWGWGGGGGG++KWGC       R     G  
Sbjct: 21  GGGGGGGYGWGWGGGGGGGGGGGGGGGRGWGWGGGGGGYYKWGCSSNTNGGR-----GIN 80

Query: 130 KNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR 186
             V+RK++Y  KDY++GEFAQCM +GRC+GMRLDCPLHC GPCFYDC+YMCKAHCRR
Sbjct: 81  NQVHRKRVYT-KDYKIGEFAQCMNRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCRR 131

BLAST of Lsi03G008140 vs. TAIR10
Match: AT1G75550.1 (AT1G75550.1 glycine-rich protein)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-21
Identity = 76/144 (52.78%), Postives = 90/144 (62.50%), Query Frame = 1

Query: 55  NNSDNTTTVEV----SKRNGGGGGGGYGWGWGGGGGGGGGSGGGGGG-------WGWGGG 114
           NN +N+TT  V     KR+  GG G Y WGWGGGGGGGGG GGGGGG       WGWGGG
Sbjct: 39  NNDENSTTTGVVVRDKKRSYNGGSGSYRWGWGGGGGGGGGGGGGGGGGGGGGGGWGWGGG 98

Query: 115 --GGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRL 174
             GGGW+KWGCGG  K +    R+GR + V R            E+A+C  +G+C G RL
Sbjct: 99  GGGGGWYKWGCGGGGKGK---GREGRGEFVKR------------EYAECKGRGKCSGKRL 158

Query: 175 DCPLHCDGPCFYDCRYMCKAHCRR 186
           +CP HC G CFYDC ++CK HCRR
Sbjct: 159 ECPQHCGGLCFYDCLFLCKPHCRR 167

BLAST of Lsi03G008140 vs. NCBI nr
Match: gi|659110503|ref|XP_008455258.1| (PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 6.4e-75
Identity = 164/195 (84.10%), Postives = 172/195 (88.21%), Query Frame = 1

Query: 1   MGWENPIKLCALVVFAAVIYGSRA-EGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDN 60
           MGWENPIKL ALV+ A VIYGSRA EGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N
Sbjct: 1   MGWENPIKLSALVILATVIYGSRAAEGLGNGSMPINVTFLTFSELPQRNAGE-RRNSSSN 60

Query: 61  TTTVEVSKRN-GGGGGGGYGWGW------GGGGGGGGGSGGGGGGWGWGGGGGGWWKWGC 120
           T+TVEVSK+N GGGGGGGYGWGW      GGGGGGGGG GGGGGGWGWGGGGGGWWKWGC
Sbjct: 61  TSTVEVSKQNGGGGGGGGYGWGWGSGGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGC 120

Query: 121 GGQRKSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGP 180
           GG+ K E+VGRRD  GRRKNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GP
Sbjct: 121 GGRPKFEKVGRRDDNGRRKNVKRKKMYNEKDYRMGEFAQCMVKGRCRGMRLDCPLHCGGP 180

Query: 181 CFYDCRYMCKAHCRR 186
           CFYDCRYMCKAHC R
Sbjct: 181 CFYDCRYMCKAHCTR 194

BLAST of Lsi03G008140 vs. NCBI nr
Match: gi|778730147|ref|XP_011659711.1| (PREDICTED: keratin, type II cytoskeletal 2 epidermal [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-74
Identity = 161/191 (84.29%), Postives = 168/191 (87.96%), Query Frame = 1

Query: 1   MGWENPIKLCALVVFAAVIYGSRA-EGLGNGSMPTNVTFLTFSELPQGNAGEIRRNNSDN 60
           MGWENPIKL ALV+ A VI GSRA EGLGNGSMP NVTFLTFSELPQ NAGE RRN+S N
Sbjct: 1   MGWENPIKLSALVILATVISGSRAAEGLGNGSMPMNVTFLTFSELPQRNAGE-RRNSSSN 60

Query: 61  TTTVEVSKRNGGGGGGGYGWGWG---GGGGGGGGSGGGGGGWGWGGGGGGWWKWGCGGQR 120
           +TTVEVSK+NGGGGGGGYGWGWG   GGGGGGGG GGGGGGWGWGGGGGGWWKWGCGGQ 
Sbjct: 61  STTVEVSKQNGGGGGGGYGWGWGSGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQP 120

Query: 121 KSERVGRRD--GRRKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYD 180
           KSERVGRRD  G  +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHC GPCFYD
Sbjct: 121 KSERVGRRDDNGGSRNVKGKRMYSEKDYRMGEFAQCMVKGRCRGMRLDCPLHCGGPCFYD 180

Query: 181 CRYMCKAHCRR 186
           CRYMCKAHC R
Sbjct: 181 CRYMCKAHCNR 190

BLAST of Lsi03G008140 vs. NCBI nr
Match: gi|694317112|ref|XP_009336768.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Pyrus x bretschneideri])

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 90/127 (70.87%), Postives = 99/127 (77.95%), Query Frame = 1

Query: 70  GGGGGGGYGWGWGGGGGGGGGSGGG------GGGWGWGGGGGG--WWKWGCGGQRKSERV 129
           GGGGGGGY WGWGGGGGGGGG GGG      GGGWGWGGGGGG  WWKWGCGG +   R 
Sbjct: 139 GGGGGGGYAWGWGGGGGGGGGGGGGRGGKGGGGGWGWGGGGGGAGWWKWGCGGGKGKGR- 198

Query: 130 GRRDGRRKN---VNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYM 186
           G R GR  N     RK+ +DE++Y MGE+AQCM KG+CKGMRLDCPLHC GPCFYDC++M
Sbjct: 199 GGRGGRNSNHVYSGRKRRFDEEEYVMGEYAQCMRKGQCKGMRLDCPLHCGGPCFYDCQHM 258

BLAST of Lsi03G008140 vs. NCBI nr
Match: gi|1009135066|ref|XP_015884786.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Ziziphus jujuba])

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 93/164 (56.71%), Postives = 113/164 (68.90%), Query Frame = 1

Query: 29  NGSMPTNVTFLTFSELPQGNAGEIRRNNSDNTTTVEVS-KRNGGGGGGGYGWGWGGGGGG 88
           NG    + T L+F  LP  N GE + N + N + V +S  RN   G GG     GGGGGG
Sbjct: 18  NGRKAIDATSLSFGGLPSSNNGEAK-NMTSNYSQVTISYNRNKNTGRGG-----GGGGGG 77

Query: 89  GGGSGGGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRDG------RRKNVNRKKMYDEKD 148
           G G GGGGGGWGWGGGGGGW+KWGCG Q ++ + G R G        K+  RK+++ + D
Sbjct: 78  GSGGGGGGGGWGWGGGGGGWFKWGCGRQPEAGKRGGRGGGGGGGIHNKHFERKRIFSKDD 137

Query: 149 YRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR 186
           Y++GEFAQCM +GRC+GMRLDCPLHC GPCFYDC+YMCKAHCRR
Sbjct: 138 YKLGEFAQCMRRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCRR 175

BLAST of Lsi03G008140 vs. NCBI nr
Match: gi|645229318|ref|XP_008221411.1| (PREDICTED: glycine-rich protein 2 [Prunus mume])

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 91/164 (55.49%), Postives = 108/164 (65.85%), Query Frame = 1

Query: 42  SELPQGNAGEIRRNNSDN-TTTVEVSKRNG---------GGGGGGYGWGWGGGGGGGGGS 101
           +E+P G  G++R   + + T  V ++ +N          GGGGGGY WGWGGGGGGGGG 
Sbjct: 27  AEIPSGGNGQVRNETAPSYTNQVVINNKNKHQGRGGSGRGGGGGGYSWGWGGGGGGGGGG 86

Query: 102 ----------GGGGGGWGWGGGGGGWWKWGCGGQRKSERVGRRDGRRKNVNRKKMYDEKD 161
                     GGGGGGWG GGGG GWWKWGCGG           G+ +   RK+ +DE D
Sbjct: 87  RGRGGGGGGGGGGGGGWGGGGGGAGWWKWGCGG-----------GKGRGGRRKRRFDEAD 146

Query: 162 YRMGEFAQCMVKGRCKGMRLDCPLHCDGPCFYDCRYMCKAHCRR 186
           Y +GEFAQCM KGRCKGMRLDCPLHC GPC+YDC+YMCKAHC+R
Sbjct: 147 YAVGEFAQCMRKGRCKGMRLDCPLHCGGPCYYDCQYMCKAHCKR 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K766_CUCSA2.9e-7484.29Uncharacterized protein OS=Cucumis sativus GN=Csa_7G056450 PE=4 SV=1[more]
A0A067KQT9_JATCU2.6e-3051.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04511 PE=4 SV=1[more]
A0A0D2QJC8_GOSRA3.3e-3064.17Uncharacterized protein OS=Gossypium raimondii GN=B456_009G196900 PE=4 SV=1[more]
F6GZQ6_VITVI9.7e-3070.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13540 PE=4 SV=... [more]
A0A067H1H4_CITSI1.3e-2972.65Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038433mg PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G75550.14.3e-2152.78 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|659110503|ref|XP_008455258.1|6.4e-7584.10PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo][more]
gi|778730147|ref|XP_011659711.1|4.1e-7484.29PREDICTED: keratin, type II cytoskeletal 2 epidermal [Cucumis sativus][more]
gi|694317112|ref|XP_009336768.1|1.3e-3070.87PREDICTED: putative glycine-rich cell wall structural protein 1 [Pyrus x bretsch... [more]
gi|1009135066|ref|XP_015884786.1|1.6e-3056.71PREDICTED: putative glycine-rich cell wall structural protein 1 [Ziziphus jujuba... [more]
gi|645229318|ref|XP_008221411.1|2.1e-3055.49PREDICTED: glycine-rich protein 2 [Prunus mume][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008140.1Lsi03G008140.1mRNA