Bhi05G000631 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000631
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	keratin, type II cytoskeletal 1
Location	chr5 : 25703764 .. 25704529 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGCTTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGACCACAAATGTCACTTTCTTAACATTCTCAGAGCTGCCACAGGGTAATGCAGGGGAGATCAAGAGAAACAATTCTGGTAATACTACTACGGTTGAGGTCAGCAAGCGGAATCGGGGAGGCAGTGGCGGTGGCTATGGATGGGGATGGGGCGGCGGTGGAGGTGGGGGAGGTGCGGAGGTGGCGGAGGTGGTGGTGGAGGTTGGGGATGGGGAGGAGGTGGAGGTGGATGGTGGAAATGGGGTTGTGGAGGACAGCGAAAATCCGAGAGAGTTCGACGACACGACGGACAGAGGAATAATTTTAACAGGAAGAAAATGTATGACGAGGACGATTATAGAATGGGGGAATTTGCCCAATGTATGGTGAAAGGAAGATGTAGAGGAATGAGATTAGACTGCCCACTTCACTGCGGCGGACCTTGCTTTTATGACTGTCGATACATGTGCAAGGCTCATTGTAGACGCCCCTAATTTGCATTGCGAGCCATAGCTCCATAACTCTTAAGCTTACTCAGTTTAATTTGACCTTTTTTTTTTCACTTTTAACTATGTAGCAGAATTAAGTATTTTCTCTTTTTGATAAAGAAGCTAATTTGATTTCAATTTGTTGAAACTCTTTAATTTGCCTATCTGTTTCACCCTAGTCACCTTAATGTGTGTGGGAGATGATTGCCTGCCT

mRNA sequence

GGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGCTTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGACCACAAATGTCACTTTCTTAACATTCTCAGAGCTGCCACAGGGTAATGCAGGGGAGATCAAGAGAAACAATTCTGGTAATACTACTACGGTTGAGGACAGCGAAAATCCGAGAGAGTTCGACGACACGACGGACAGAGGAATAATTTTAACAGGAAGAAAATGTATGACGAGGACGATTATAGAATGGGGGAATTTGCCCAATGTATGGTGAAAGGAAGATGTAGAGGAATGAGATTAGACTGCCCACTTCACTGCGGCGGACCTTGCTTTTATGACTGTCGATACATGTGCAAGGCTCATTGTAGACGCCCCTAATTTGCATTGCGAGCCATAGCTCCATAACTCTTAAGCTTACTCAGTTTAATTTGACCTTTTTTTTTTCACTTTTAACTATGTAGCAGAATTAAGTATTTTCTCTTTTTGATAAAGAAGCTAATTTGATTTCAATTTGTTGAAACTCTTTAATTTGCCTATCTGTTTCACCCTAGTCACCTTAATGTGTGTGGGAGATGATTGCCTGCCT

Coding sequence (CDS)

GAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGCTTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGACCACAAATGTCACTTTCTTAACATTCTCAGAGCTGCCACAGGGTAATGCAGGGGAGATCAAGAGAAACAATTCTGGTAATACTACTACGGTTGAGGACAGCGAAAATCCGAGAGAGTTCGACGACACGACGGACAGAGGAATAATTTTAACAGGAAGAAAATGTATGACGAGGACGATTATAGAATGGGGGAATTTGCCCAATGTATGGTGA

Protein sequence

ENPIKLCALVVFAAVLYGSRAEGLGNGSMTTNVTFLTFSELPQGNAGEIKRNNSGNTTTVEDSENPREFDDTTDRGIILTGRKCMTRTIIEWGNLPNVW

Homology

[Close]

BLAST of Bhi05G000631 vs. TrEMBL
Match: tr|A0A1S3C029|A0A1S3C029_CUCME (keratin, type II cytoskeletal 1 OS=Cucumis melo OX=3656 GN=LOC103495464 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  ENPIKLCALVVFAAVLYGSR-AEGLGNGSMTTNVTFLTFSELPQGNAGEIKRN 53
          ENPIKL ALV+ A V+YGSR AEGLGNGSM  NVTFLTFSELPQ NAGE +RN
Sbjct: 4  ENPIKLSALVILATVIYGSRAAEGLGNGSMPINVTFLTFSELPQRNAGE-RRN 55

[Close]

BLAST of Bhi05G000631 vs. TrEMBL
Match: tr|A0A0A0K766|A0A0A0K766_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G056450 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  ENPIKLCALVVFAAVLYGSR-AEGLGNGSMTTNVTFLTFSELPQGNAGEIKRN 53
          ENPIKL ALV+ A V+ GSR AEGLGNGSM  NVTFLTFSELPQ NAGE +RN
Sbjct: 4  ENPIKLSALVILATVISGSRAAEGLGNGSMPMNVTFLTFSELPQRNAGE-RRN 55

[Close]

BLAST of Bhi05G000631 vs. NCBI nr
Match: XP_008455258.1 (PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  ENPIKLCALVVFAAVLYGSR-AEGLGNGSMTTNVTFLTFSELPQGNAGEIKRN 53
          ENPIKL ALV+ A V+YGSR AEGLGNGSM  NVTFLTFSELPQ NAGE +RN
Sbjct: 4  ENPIKLSALVILATVIYGSRAAEGLGNGSMPINVTFLTFSELPQRNAGE-RRN 55

[Close]

BLAST of Bhi05G000631 vs. NCBI nr
Match: XP_011659711.1 (PREDICTED: keratin, type II cytoskeletal 2 epidermal [Cucumis sativus] >KGN43666.1 hypothetical protein Csa_7G056450 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-10
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  ENPIKLCALVVFAAVLYGSR-AEGLGNGSMTTNVTFLTFSELPQGNAGEIKRN 53
          ENPIKL ALV+ A V+ GSR AEGLGNGSM  NVTFLTFSELPQ NAGE +RN
Sbjct: 4  ENPIKLSALVILATVISGSRAAEGLGNGSMPMNVTFLTFSELPQRNAGE-RRN 55

The following BLAST results are available for this feature:

BLAST of Bhi05G000631 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G000631 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05G000631 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C029\|A0A1S3C029_CUCME	1.5e-11	79.25	keratin, type II cytoskeletal 1 OS=Cucumis melo OX=3656 GN=LOC103495464 PE=4 SV=...	[more]
tr\|A0A0A0K766\|A0A0A0K766_CUCSA	1.7e-10	77.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G056450 PE=4 SV=1	[more]

BLAST of Bhi05G000631 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455258.1	2.3e-11	79.25	PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]	[more]
XP_011659711.1	2.6e-10	77.36	PREDICTED: keratin, type II cytoskeletal 2 epidermal [Cucumis sativus] >KGN43666...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000631	Bhi05M000631	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi05G000631	Csa7G056450	Cucumber (Chinese Long) v2	cuwgoB661
Bhi05G000631	MELO3C018685	Melon (DHL92) v3.5.1	mewgoB220
Bhi05G000631	CSPI07G05120	Wild cucumber (PI 183967)	cpiwgoB672
Bhi05G000631	Lsi03G008140	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000631	CsGy7G004680	Cucumber (Gy14) v2	cgybwgoB632
Bhi05G000631	MELO3C018685.2	Melon (DHL92) v3.6.1	medwgoB220
Bhi05G000631	CsaV3_7G006070	Cucumber (Chinese Long) v3	cucwgoB686
Bhi05G000631	Cla009423	Watermelon (97103) v1	wgowmB248
Bhi05G000631	Cla97C09G176190	Watermelon (97103) v2	wgowmbB274

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000631	Cucumber (Gy14) v1	cgywgoB377
Bhi05G000631	Cucumber (Gy14) v1	cgywgoB694
Bhi05G000631	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000631	Cucurbita maxima (Rimu)	cmawgoB0655
Bhi05G000631	Cucurbita moschata (Rifu)	cmowgoB0118
Bhi05G000631	Cucurbita moschata (Rifu)	cmowgoB0656
Bhi05G000631	Cucurbita pepo (Zucchini)	cpewgoB0329
Bhi05G000631	Cucurbita pepo (Zucchini)	cpewgoB0853
Bhi05G000631	Cucumber (Chinese Long) v2	cuwgoB560
Bhi05G000631	Watermelon (Charleston Gray)	wcgwgoB045
Bhi05G000631	Silver-seed gourd	carwgoB0761
Bhi05G000631	Silver-seed gourd	carwgoB0868