Lsi03G004810 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA ligase-like protein
Location	chr03 : 5469807 .. 5474970 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCACTTCTCCTCTCGGCTCCCACTGCGTCTCTTCCTCTCTTTCAAATCTCTCTCGTTTCTGTACAACTTTACTGTTACTACTGAGAATTGGCTATGGAGAATTTGTCACACAGAGATGCTAATCAATTGAAAGCAAAAAATCACGGTACATTGCTCTTAGCTATCTTATTTGTTTGAATTGTGTGTGTATTTCTTAGAAAGCTGAACGTGTCTTGATCGGATGCAAATGCTGGATTCATGAATTCATTTTAGGTCAGAAGATTATGATAGTATTTCATAGATTAAAAAGCAATGCAGAACTCTCATGGTTGCTTTAGGCACGGGGATGCGATATCGTTTGATAATCAAATAAACAAACGCTGGAAACGTACACAGAGGAAATATGCTTTCCGATGTCTACATTAACGATTTTAGAGGATTATGTGTGCGGAAGTCAAAGTTAGTTCACTTTTTTTAATTTTCACTGTTGCTCGATCTCTACATCGCTTGTTTGTAGTTTCCGCAAATCCAATGATGCTAAACGAGAAAAATTATAGTTGTCTGTGCTGATTATTTATGCGAGAACAAAGATATTTCTCCTCCGGAATGTAAATCTTCCGTGCTTCAGAACTCTGTAGGAAAATTGTTAGCAAGCGTTTAAGTTCTTTATGTAATTAATCTAAGCCGGAAAAAAAGAACCTATACTACTCTCATCATATTAACTCTTGATCCGACTAGCATTATCACAACACTCGTGATTTAATGCATTTCTTTCACTAGACATTAGACAATATTCTGGGAATCGCAGCTGCACATCTTCGAGTTTTTGGAATCTCATGCCACCACATAGCAAAATCTGCTTTATGTTAGATCTTGCGTCCTACCTCTTCTTTTCCTTTTTATATTTTAAAGTTTTGGAATCGGCTAAATAATATAAAAGAAGATCATCATGATGATTAGATTGTGATGCTTGCACGCGAAATGAATTTATACATGTAGAACATGTTAACAAAAAACTTGCATGTACATGTTTTAAATGTCTGAGTAAGCTCTAGAATGGTGCATTGGCATCATCTTTTTGTTTCGCAAATGCAGGTGGTGGAGTCTGTTTGATGAGCAATACATGGAGAGATGAGCAGCATCCATCCTTCATCAATTTCATGTCAAATTTCCTTTGCACAAACTCATTTCGCCTCAATTTTGTTCCAATTGTCCCAGTAATTTTCTTTACTTTTTTGGTATGTAAATTTCATTGACAACCCTTCAGTACTCATATCAACCACTTGTAGGACTTGATATTCAATTGCGGGGGTTTATCAGTGGCTTTTGCTTTCCTGACAAGTTGGGATTGCAGCAATACGTCATCAATCTTTAGCAGGTAGCTTTGTTGTTTATGGCTTTTCTTTTTTGCTGGTTTTGCCTTTTGTTTTGTTTGATTCAATCTGATCTTGACAGAGTTCAAAAGTTGAAGAAGCAGTTTGCAAATTTCTATGTTGTTGTTGCCCTTCCAACCAAGGAGCAGAATGGTTCATTTGTTCAATCTTACTTCAGGTAATCAGAGTCTGGTATCTTGAATGGTTCCTTGCTTCATTTGGTATTTTTTTTAGAGAACTTACATTTCCTTTCCTCCCCGCTAAATCTCGTGGAGAAATGGGTTGGAGATTGGTAAGCCACCATTTGTAGCAGTTCAGGATATTGAGATGGGCTTTGAGAAGATTGTGAAGATAGCACATTCTCGTGGAGGTAGTAATCATTTTAAATTTGGGTTGAATACTTTCCTTAATCATCTTCAATAATTATATCAAATTACAGCATGCAAGCAGCAAGATGTCATGTCAAAACTGAAAACTGAGGTCAGTTGGTGTAGATTATATTCTACTTGAATCAGTAGTGACAATTCAATATCTAGTGCTCATATAGTGTTTTTTACACGAGTTTTAATCACCGTCTCCCCCTTTTGGGGCTCTTGTTGAAGAGGAAGAGATCGGTGCAAGTCATGGATGCTTTTCGTAGAGTCATGTCTTCTGTACCAGGCCTTGATGATCACGATGCAAATTCGGTAAGTTAACCAACACATTCTTTATTTTCTGTATTGTTTTCTTATTTGTTCCTATCACTAAACATAGATTTAGTTGAGAAAAGGGAGAGTTTTGTTAATGGAAACTCACACATCCTAGTGCAACTCTGTCCTCAATATATATACTCTGTGAGAAGAGAAAAAGGTAAAACAGATGAACTTGAAAGTAACTGACTACAAACTGATAGACCAAGTAAATATATTTAGTAGTTCCACTTCTCGTTCTATATATCTCTGATGTAGCCTAGAAACCGTTCTTGCTGGAGTTTCCACCCAAGAAAAGGCGGTTGTAGCACTAGCATGTATCTTTCACTTGTATATGATACCGATCTTGAGATTCAAAAAAGAAATTGATTGATGGAAACATGAAGCTCTTCTCTCTCGTTCTAGATTTTTTGTCCTTTTTTTTTGCCATCAGTCATTAGGACTTTATCACAATATTTTGTGATTGTCATATTCTTAATAATTTAACTTCAGTTTATTTTCTGGTGGGTAATAATATTTGGGCTAAATTTTAATATATACCCTCGAAGTCTTGAATATGCAAAATTATAGAAGATACTCCTGACCTTGTACTTTATTTAAAAAATACATTTGCATTTATAAAAGTTTCAATAATACACTTAAACTTAAAAAAAAAAAGTTAAAAAAGTACATTTGCCATCAGTTTTGGATGGAAACCGTTAGTACTTTGTTAAGAAAATGTATTCAAGGACTCCACCTCTACTTTTGATAAATTTATGGATTTGGTTCTTACTTATGTATATAATTGGTGTAAATCTGGGCCTCCTTTTACTTCTTATACTTTATCTTTTTTTTTTTCAATTGGAGGGGCTTCTTGTAATCACCTTTAGCAATAAAACTTTGTTGATCCTTTTTGTAGTTCAAATTAGCATGTTTGTTGTGGTCGTTAGGAAGGTTTTTCATGATCAATATGATATTCCTTTATTAGATTTTTTCGTATTTAGCAATTTATCGTTTGTTGAGTTTTCAGGGGAGATCTTGATTTTGGGACTTTGTAAAATTTTGTGGAATTTTATGTTTTAACTTAAAGTCTTAGGTTTTGTTTGGTTGTTGAGGAAAATGGTTTAAGAATTGGATAAACAGGGAAAAATGAAAGTATCTATATAGGAAAAATTGAATATTCTAATGGTAAGAATATTTTAAATTTGTTTTATTTTTTTAAAAGATTAAGGGTACTAATATAATTTTTGAAAGTTTAAAGATATTTTTGAAACGATATACTTAACAATTCCTATTCACATACTAATAGTAAATGTATTTTAAACTTTTTTTTAAAAAAAAAAAATTCAAGGGTATTATTGAAACTTTTGAAAGTTGAGGGATTCTTTTTTTGAAGCAAAGTACTAATATTTTCCATCTAACACTAACGACAAGTGTATTTTTTTAATCTTTTTTGAAAATTTAAGGGTATTATTGAAATTTTAGAGGTATTTTTGAAACAAAGTACAAAATTTAGGAGTATTTTCCATAGTTTAGGCTTTTAAAGAATACCTCTATTCTTTTGAAAGTTGCAATATTACTCTTGGTATTTTATGAATATTTCAAAATTACTTTTGAAGTAGAAATATGTTAGAATGTTGAATAAAAATGGGACTTGAAACAATGTGGTAGTAACACGTAAGGATGTGACAAATACAATTTTTGTTCTATGTCACAACCACATCAATTCTAAGTCTTAATTTTCATCCAACATTCGAGCAGAATTCTAATCAAGGAAGTTTTGAATAGTTATGTTAGGATTCCTCCTAACAAGAGAACTCAAGAACACAAAGAATAAATAAGAGAACTAAAAGATAGAATTATATTGCAATATTAATCAACAAATTACAATATACCTCAACACATTCTAGAGGGCTGAGAATACTCTCCCAAATTCCCAATTAGGAAATTCTACATAAAATTCTTCACACCCCTACTCTCAATCCATTCCCTCTACTTATAACTAAAAGACCTAACCAATTTGATGTCTAATTACTATAATAGCCGTTACTACTAATCATACTAATTATCACAATATATTCCTAACTAGGAGCCTTACAAGTTATAAAATGGTTATTTTCCCGCCAACATTTCTGCGATAAATGATAATCACATTCTCTACGAGTTTAACTAGATTGTAGCAAAGGGCCTACAGATGAAAGTATTGGCTCTTTTAAGTCAAACTTGTGATTGTACCGAATAGGTTGGAAAAAGGATTTGTTGTGGATGTAAGGCTTTTTATTTGAATATCCTTATGTCGATGACACCTCTACTATTCAGCTAAATCAAGCTATTGGTTCAATTGAGGCAATCGCCAAAGCATCGAAGGAGTACATTTTGGAGAACACAGATCTGTCAGTGGAGAAGGCGGAGAGAATTAGGACCTTTTTCAGGGATCCAAAATTCTACCTCAGTCCCAAAATAAACTGATATTTGTAATCTCTTTGGTCTCAGATGAATTCCATGGAAGAAGTTCGAGGTCAGTCATATTTTAACATCACTTTTGCTGCCTACCATAGAATTCATACTTATAAAGCTGAAAATTTAAACACTGAAACCTGTAAACGTTTCTGCAGACACACACACACCCAAAGGAAAAGGTAAGAAAAATAGAAAAGATCAAATAGAAGTAAAAGAAAACTCTATAAGCAAGTGGAAATTGAAGAGAATAAGCAGTTCCCAAGTGTTAAAGTGAGGGAGAGGATATGAACCGAGAGATGGAGAAAGAATCTTACCCATTGCTTTGTTGCTAATATAATATCCGCTGCTTAGGCTGTAGGGATGCTTAGTCAAGTTTGACTCGGTTTAAACTGTTGACTCATTCAGATTTTGAATACATATAAATGCTTTGCTAGCTATTGCCTGTGCGGCCTGTCGTTTGTGTAGATTGAGTCTCATTCCATTTCCAGTAGGCAAAGCCAATCCACATAATAAATTGCCGTAACGGATTGAATTTATCTTATAAACATGGATGCTGGATGGAGTCAACCCATGTGATAAATTTTGGGGTTAGGTTCTATGAGCAAATATTTATTATTATTGTAAATATCAATTTATACTTTTAAACTTCGGAGGTTATATCAATTTGAACCCTGAACTAATA

mRNA sequence

CGCCACTTCTCCTCTCGGCTCCCACTGCGTCTCTTCCTCTCTTTCAAATCTCTCTCGTTTCTGTACAACTTTACTGTTACTACTGAGAATTGGCTATGGAGAATTTGTCACACAGAGATGCTAATCAATTGAAAGCAAAAAATCACGGTGGTGGAGTCTGTTTGATGAGCAATACATGGAGAGATGAGCAGCATCCATCCTTCATCAATTTCATGTCAAATTTCCTTTGCACAAACTCATTTCGCCTCAATTTTGTTCCAATTGTCCCAGACTTGATATTCAATTGCGGGGGTTTATCAGTGGCTTTTGCTTTCCTGACAAGTTGGGATTGCAGCAATACGTCATCAATCTTTAGCAGAGTTCAAAAGTTGAAGAAGCAGTTTGCAAATTTCTATGTTGTTGTTGCCCTTCCAACCAAGGAGCAGAATGGTTCATTTGTTCAATCTTACTTCAGAAATGGGTTGGAGATTGGTAAGCCACCATTTGTAGCAGTTCAGGATATTGAGATGGGCTTTGAGAAGATTGTGAAGATAGCACATTCTCGTGGAGCATGCAAGCAGCAAGATGTCATGTCAAAACTGAAAACTGAGAGGAAGAGATCGGTGCAAGTCATGGATGCTTTTCGTAGAGTCATGTCTTCTGTACCAGGCCTTGATGATCACGATGCAAATTCGCTAAATCAAGCTATTGGTTCAATTGAGGCAATCGCCAAAGCATCGAAGGAGTACATTTTGGAGAACACAGATCTGTCAGTGGAGAAGGCGGAGAGAATTAGGACCTTTTTCAGGGATCCAAAATTCTACCTCAGTCCCAAAATAAACTGATATTTGTAATCTCTTTGGTCTCAGATGAATTCCATGGAAGAAGTTCGAGACACACACACACCCAAAGGAAAAGGTAAGAAAAATAGAAAAGATCAAATAGAAGTAAAAGAAAACTCTATAAGCAAGTGGAAATTGAAGAGAATAAGCAGTTCCCAAGTGTTAAAGTGAGGGAGAGGATATGAACCGAGAGATGGAGAAAGAATCTTACCCATTGCTTTGTTGCTAATATAATATCCGCTGCTTAGGCTGTAGGGATGCTTAGTCAAGTTTGACTCGGTTTAAACTGTTGACTCATTCAGATTTTGAATACATATAAATGCTTTGCTAGCTATTGCCTGTGCGGCCTGTCGTTTGTGTAGATTGAGTCTCATTCCATTTCCAGTAGGCAAAGCCAATCCACATAATAAATTGCCGTAACGGATTGAATTTATCTTATAAACATGGATGCTGGATGGAGTCAACCCATGTGATAAATTTTGGGGTTAGGTTCTATGAGCAAATATTTATTATTATTGTAAATATCAATTTATACTTTTAAACTTCGGAGGTTATATCAATTTGAACCCTGAACTAATA

Coding sequence (CDS)

ATGGAGAATTTGTCACACAGAGATGCTAATCAATTGAAAGCAAAAAATCACGGTGGTGGAGTCTGTTTGATGAGCAATACATGGAGAGATGAGCAGCATCCATCCTTCATCAATTTCATGTCAAATTTCCTTTGCACAAACTCATTTCGCCTCAATTTTGTTCCAATTGTCCCAGACTTGATATTCAATTGCGGGGGTTTATCAGTGGCTTTTGCTTTCCTGACAAGTTGGGATTGCAGCAATACGTCATCAATCTTTAGCAGAGTTCAAAAGTTGAAGAAGCAGTTTGCAAATTTCTATGTTGTTGTTGCCCTTCCAACCAAGGAGCAGAATGGTTCATTTGTTCAATCTTACTTCAGAAATGGGTTGGAGATTGGTAAGCCACCATTTGTAGCAGTTCAGGATATTGAGATGGGCTTTGAGAAGATTGTGAAGATAGCACATTCTCGTGGAGCATGCAAGCAGCAAGATGTCATGTCAAAACTGAAAACTGAGAGGAAGAGATCGGTGCAAGTCATGGATGCTTTTCGTAGAGTCATGTCTTCTGTACCAGGCCTTGATGATCACGATGCAAATTCGCTAAATCAAGCTATTGGTTCAATTGAGGCAATCGCCAAAGCATCGAAGGAGTACATTTTGGAGAACACAGATCTGTCAGTGGAGAAGGCGGAGAGAATTAGGACCTTTTTCAGGGATCCAAAATTCTACCTCAGTCCCAAAATAAACTGA

Protein sequence

MENLSHRDANQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGLSVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN

Homology

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BLAST of Lsi03G004810 vs. TrEMBL
Match: A0A0A0LMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401330 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.7e-122
Identity = 223/247 (90.28%), Postives = 232/247 (93.93%), Query Frame = 1


Query: 1   MENLSHRDA-----NQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVP 60
           M N S RDA     NQ+KAKN GGGVCLMSN WRDEQHPSFINF+SNFLC+NSFRLNFVP
Sbjct: 1   MANSSQRDADQMVGNQVKAKNDGGGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVP 60

Query: 61  IVPDLIFNCGGLSVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFV 120
           I PDLIFNCGGLSVAFAFLTSW+CSNTSSIFSRVQKLKKQFAN YVVV LPTKEQN SFV
Sbjct: 61  IAPDLIFNCGGLSVAFAFLTSWECSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFV 120

Query: 121 QSYFRNGLEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDA 180
           QSYFRNG+EIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQD++SKL+TERKRSVQVMDA
Sbjct: 121 QSYFRNGMEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDA 180

Query: 181 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKF 240
           FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIR+FFRDPK 
Sbjct: 181 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKL 240

Query: 241 YLSPKIN 243
           YLSPKIN
Sbjct: 241 YLSPKIN 247

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BLAST of Lsi03G004810 vs. TrEMBL
Match: F6HMY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03690 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.7e-95
Identity = 169/224 (75.45%), Postives = 198/224 (88.39%), Query Frame = 1


Query: 19  GGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGLSVAFAFLTSWD 78
           GGVC+M NTWRDEQHPSFINF+S+FL  NSFRLNFVPI PD IFNCGGLSVAF F+T+WD
Sbjct: 25  GGVCMMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWD 84

Query: 79  CSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGKPPFVAVQDIEM 138
           C+N    FSRV+KLK+QFA+ Y+VV LPT+EQN SFV SYF+ G+E+G+P FV VQD+EM
Sbjct: 85  CNNYLPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEM 144

Query: 139 GFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 198
           GFEKIVKIAH+RG CK+QDV+SKL+ ERK+SVQ MD F RV++S+PG+D+HDANSLNQAI
Sbjct: 145 GFEKIVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAI 204

Query: 199 GSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN 243
           GSI+AIAKASK+YILENTDLS +KAE I  FFRDPKFYLSPKIN
Sbjct: 205 GSIKAIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 248

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BLAST of Lsi03G004810 vs. TrEMBL
Match: B9GGV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38620g PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.0e-92
Identity = 166/223 (74.44%), Postives = 190/223 (85.20%), Query Frame = 1


Query: 20  GVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGLSVAFAFLTSWDC 79
           GVC+M+  WRDEQHPSFINF+++FL  NSFRLNFVPI PD IFNCGGLSVAF F+T+WDC
Sbjct: 19  GVCMMNTKWRDEQHPSFINFIASFLSANSFRLNFVPIAPDCIFNCGGLSVAFIFVTNWDC 78

Query: 80  SNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGKPPFVAVQDIEMG 139
            N   IFSRV+KLK QFAN YVVV+LP KEQN SFV SYF+ G+E+GKP FV VQD+EMG
Sbjct: 79  QNCEPIFSRVKKLKGQFANLYVVVSLPIKEQNDSFVHSYFKYGMELGKPTFVPVQDLEMG 138

Query: 140 FEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIG 199
           FEKIVKIAHSRG CK+QD +SKLK ERK+SVQ M  F RV++S+PG+D+HDAN+LNQAIG
Sbjct: 139 FEKIVKIAHSRGTCKRQDALSKLKAERKQSVQGMGNFLRVVTSIPGIDNHDANALNQAIG 198

Query: 200 SIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN 243
           SIEAIAKASK YILENTDLS + AE +  FFRDPKFYL PKIN
Sbjct: 199 SIEAIAKASKGYILENTDLSADNAETVTKFFRDPKFYLGPKIN 241

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BLAST of Lsi03G004810 vs. TrEMBL
Match: W9SXX2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012622 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 169/231 (73.16%), Postives = 194/231 (83.98%), Query Frame = 1


Query: 12  LKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGLSVAF 71
           L A +   GVC+MSNTW+ EQHPSFINF+S FL  NSFRLNFV I PD IFNCGG SVAF
Sbjct: 14  LAAADGVSGVCMMSNTWKVEQHPSFINFISTFLNANSFRLNFVGIAPDFIFNCGGSSVAF 73

Query: 72  AFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGKPPFV 131
            FLT+WDC+N S +F R+QKL+ QFA+ YVV+ L TKEQN SFV+SYF+ G E+GKP FV
Sbjct: 74  IFLTNWDCTNVSPVFGRIQKLRLQFAHLYVVITLATKEQNDSFVRSYFKFGTELGKPTFV 133

Query: 132 AVQDIEMGFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLDDHDA 191
            VQD+EMGFEKIVKIAHS G CKQQD  +KLK+ERK++VQ MD FR+V++S+PG+D HDA
Sbjct: 134 PVQDMEMGFEKIVKIAHSLGVCKQQDATTKLKSERKQAVQGMDVFRQVVTSIPGIDAHDA 193

Query: 192 NSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN 243
           N+LNQAIGSIEAIAKASKEYILENTDLS EKAE I  FFRDPKFYLSPKIN
Sbjct: 194 NALNQAIGSIEAIAKASKEYILENTDLSAEKAEVIFRFFRDPKFYLSPKIN 244

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BLAST of Lsi03G004810 vs. TrEMBL
Match: A0A067LMH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17216 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.0e-91
Identity = 164/222 (73.87%), Postives = 194/222 (87.39%), Query Frame = 1


Query: 20  GVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGLSVAFAFLTSWDC 79
           GVC+M++ W+DEQHPSFINF+S+FL  N FRLNFVPI PD IFNCGGLSVAF F+T WDC
Sbjct: 48  GVCMMNSKWKDEQHPSFINFISSFLAANCFRLNFVPISPDCIFNCGGLSVAFIFVTKWDC 107

Query: 80  SNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGKPPFVAVQDIEMG 139
            N+  IF+RV+KLK QFAN YVVV+LPTKE+N SFV+SYF++G+E+G+P FV VQD+EMG
Sbjct: 108 ENSMPIFNRVKKLKSQFANLYVVVSLPTKEKNDSFVRSYFKHGMEVGRPTFVPVQDLEMG 167

Query: 140 FEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIG 199
           FEKIVKIA SRGACK+QDVMSKLK ERK++VQ MD F R ++S+PG+D HDAN+L QAIG
Sbjct: 168 FEKIVKIALSRGACKKQDVMSKLKAERKQAVQGMDIFIRAITSIPGIDSHDANALIQAIG 227

Query: 200 SIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKI 242
           SIEAIAKASKE+ILENTDLS EKA+ I  FFRDP+FYLSPKI
Sbjct: 228 SIEAIAKASKEFILENTDLSAEKADIIAKFFRDPQFYLSPKI 269

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BLAST of Lsi03G004810 vs. TAIR10
Match: AT1G12790.1 (AT1G12790.1 RuvA domain 2-like (InterPro:IPR010994))

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-82
Identity = 152/237 (64.14%), Postives = 183/237 (77.22%), Query Frame = 1


Query: 6   HRDANQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCG 65
           H+ ++ L    +  GVC+MSN W+ EQ PS INF+S FL  NSFRLNFV I PDLIFNCG
Sbjct: 14  HQVSSPLVNLGNVAGVCIMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCG 73

Query: 66  GLSVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEI 125
           G+S+AF F+T WD SN +SIFSRV++LK QFA  YVV  L TKEQ+ SF++SYF+  +E 
Sbjct: 74  GVSIAFVFVTKWDFSNVASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEF 133

Query: 126 GKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPG 185
           GKP FV V D EMGFEKIVKIAHSRG CKQQ V SKLK ERKR+VQ  + F R ++S+P 
Sbjct: 134 GKPAFVQVTDAEMGFEKIVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPN 193

Query: 186 LDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN 243
           ++ HDAN+L QAIGSIEAIAKASKE IL NTDLS +KA+ +  FF+DP+FYLSPK N
Sbjct: 194 INKHDANTLYQAIGSIEAIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250

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BLAST of Lsi03G004810 vs. NCBI nr
Match: gi|659081144|ref|XP_008441175.1| (PREDICTED: uncharacterized protein LOC103485388 isoform X3 [Cucumis melo])

HSP 1 Score: 447.2 bits (1149), Expect = 1.8e-122
Identity = 219/235 (93.19%), Postives = 227/235 (96.60%), Query Frame = 1


Query: 8   DANQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGL 67
           D N +KAKNHGGGVCLMSN WRDEQHPSFINF+SNFLC+NSFRLNFVPI PDLIFNCGGL
Sbjct: 9   DGNHMKAKNHGGGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGL 68

Query: 68  SVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGK 127
           SVAFAFLTSWDCSNTSSIFSRVQKLKKQFAN YVVV LPTKEQN SFVQSYFRNG+EIGK
Sbjct: 69  SVAFAFLTSWDCSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGK 128

Query: 128 PPFVAVQDIEMGFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLD 187
           PPFVAVQDIEMGFEKIVKIAHSRGACKQQD++SKL+TERKRSVQVMDAFRRVMSSVPGLD
Sbjct: 129 PPFVAVQDIEMGFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLD 188

Query: 188 DHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN 243
           DHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIR+FFRDPKFYLS KIN
Sbjct: 189 DHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKFYLSLKIN 243

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BLAST of Lsi03G004810 vs. NCBI nr
Match: gi|449442112|ref|XP_004138826.1| (PREDICTED: uncharacterized protein LOC101220741 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.4e-122
Identity = 223/247 (90.28%), Postives = 232/247 (93.93%), Query Frame = 1


Query: 1   MENLSHRDA-----NQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVP 60
           M N S RDA     NQ+KAKN GGGVCLMSN WRDEQHPSFINF+SNFLC+NSFRLNFVP
Sbjct: 1   MANSSQRDADQMVGNQVKAKNDGGGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVP 60

Query: 61  IVPDLIFNCGGLSVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFV 120
           I PDLIFNCGGLSVAFAFLTSW+CSNTSSIFSRVQKLKKQFAN YVVV LPTKEQN SFV
Sbjct: 61  IAPDLIFNCGGLSVAFAFLTSWECSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFV 120

Query: 121 QSYFRNGLEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDA 180
           QSYFRNG+EIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQD++SKL+TERKRSVQVMDA
Sbjct: 121 QSYFRNGMEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDA 180

Query: 181 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKF 240
           FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIR+FFRDPK 
Sbjct: 181 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKL 240

Query: 241 YLSPKIN 243
           YLSPKIN
Sbjct: 241 YLSPKIN 247

[Close]

BLAST of Lsi03G004810 vs. NCBI nr
Match: gi|659081136|ref|XP_008441171.1| (PREDICTED: uncharacterized protein LOC103485388 isoform X1 [Cucumis melo])

HSP 1 Score: 434.1 bits (1115), Expect = 1.6e-118
Identity = 219/258 (84.88%), Postives = 227/258 (87.98%), Query Frame = 1


Query: 8   DANQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGL 67
           D N +KAKNHGGGVCLMSN WRDEQHPSFINF+SNFLC+NSFRLNFVPI PDLIFNCGGL
Sbjct: 9   DGNHMKAKNHGGGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGL 68

Query: 68  SVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGK 127
           SVAFAFLTSWDCSNTSSIFSRVQKLKKQFAN YVVV LPTKEQN SFVQSYFRNG+EIGK
Sbjct: 69  SVAFAFLTSWDCSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGK 128

Query: 128 PPFVAVQDIEMGFEKIVKIAHSRG-----------------------ACKQQDVMSKLKT 187
           PPFVAVQDIEMGFEKIVKIAHSRG                       ACKQQD++SKL+T
Sbjct: 129 PPFVAVQDIEMGFEKIVKIAHSRGGSNHFKFWLNTFLNHLQQLYQITACKQQDIISKLRT 188

Query: 188 ERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAE 243
           ERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAE
Sbjct: 189 ERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAE 248

[Close]

BLAST of Lsi03G004810 vs. NCBI nr
Match: gi|659081142|ref|XP_008441174.1| (PREDICTED: uncharacterized protein LOC103485388 isoform X2 [Cucumis melo])

HSP 1 Score: 410.2 bits (1053), Expect = 2.5e-111
Identity = 210/258 (81.40%), Postives = 218/258 (84.50%), Query Frame = 1


Query: 8   DANQLKAKNHGGGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGL 67
           D N +KAKNHGGGVCLMSN WRDEQHPSFINF+SNFLC+NSFRLNFVPI PDLIFNCGGL
Sbjct: 9   DGNHMKAKNHGGGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGL 68

Query: 68  SVAFAFLTSWDCSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGK 127
           SVAFAFLTSWDCSNTSSIFSRVQKLKKQFAN YVVV LPTKEQN SFVQSYFRNG+EIGK
Sbjct: 69  SVAFAFLTSWDCSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGK 128

Query: 128 PPFVAVQDIEMGFEKIVKIAHSRG-----------------------ACKQQDVMSKLKT 187
           PPFVAVQDIEMGFEKIVKIAHSRG                       ACKQQD++SKL+T
Sbjct: 129 PPFVAVQDIEMGFEKIVKIAHSRGGSNHFKFWLNTFLNHLQQLYQITACKQQDIISKLRT 188

Query: 188 ERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAE 243
           ERKRSVQVMDAFRRVMSSVPGLDDHDANS         AIAKASKEYILENTDLSVEKAE
Sbjct: 189 ERKRSVQVMDAFRRVMSSVPGLDDHDANS---------AIAKASKEYILENTDLSVEKAE 248

[Close]

BLAST of Lsi03G004810 vs. NCBI nr
Match: gi|225460065|ref|XP_002271557.1| (PREDICTED: uncharacterized protein LOC100253283 isoform X2 [Vitis vinifera])

HSP 1 Score: 357.1 bits (915), Expect = 2.5e-95
Identity = 169/224 (75.45%), Postives = 198/224 (88.39%), Query Frame = 1


Query: 19  GGVCLMSNTWRDEQHPSFINFMSNFLCTNSFRLNFVPIVPDLIFNCGGLSVAFAFLTSWD 78
           GGVC+M NTWRDEQHPSFINF+S+FL  NSFRLNFVPI PD IFNCGGLSVAF F+T+WD
Sbjct: 25  GGVCMMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWD 84

Query: 79  CSNTSSIFSRVQKLKKQFANFYVVVALPTKEQNGSFVQSYFRNGLEIGKPPFVAVQDIEM 138
           C+N    FSRV+KLK+QFA+ Y+VV LPT+EQN SFV SYF+ G+E+G+P FV VQD+EM
Sbjct: 85  CNNYLPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEM 144

Query: 139 GFEKIVKIAHSRGACKQQDVMSKLKTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 198
           GFEKIVKIAH+RG CK+QDV+SKL+ ERK+SVQ MD F RV++S+PG+D+HDANSLNQAI
Sbjct: 145 GFEKIVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAI 204

Query: 199 GSIEAIAKASKEYILENTDLSVEKAERIRTFFRDPKFYLSPKIN 243
           GSI+AIAKASK+YILENTDLS +KAE I  FFRDPKFYLSPKIN
Sbjct: 205 GSIKAIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 248

The following BLAST results are available for this feature:

BLAST of Lsi03G004810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMP7_CUCSA	1.7e-122	90.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401330 PE=4 SV=1	[more]
F6HMY0_VITVI	1.7e-95	75.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03690 PE=4 SV=...	[more]
B9GGV5_POPTR	1.0e-92	74.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38620g PE=4 SV=1	[more]
W9SXX2_9ROSA	3.1e-92	73.16	Uncharacterized protein OS=Morus notabilis GN=L484_012622 PE=4 SV=1	[more]
A0A067LMH0_JATCU	2.0e-91	73.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17216 PE=4 SV=1	[more]

BLAST of Lsi03G004810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12790.1	1.5e-82	64.14	RuvA domain 2-like (InterPro:IPR010994)	[more]

BLAST of Lsi03G004810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081144\|ref\|XP_008441175.1\|	1.8e-122	93.19	PREDICTED: uncharacterized protein LOC103485388 isoform X3 [Cucumis melo]	[more]
gi\|449442112\|ref\|XP_004138826.1\|	2.4e-122	90.28	PREDICTED: uncharacterized protein LOC101220741 [Cucumis sativus]	[more]
gi\|659081136\|ref\|XP_008441171.1\|	1.6e-118	84.88	PREDICTED: uncharacterized protein LOC103485388 isoform X1 [Cucumis melo]	[more]
gi\|659081142\|ref\|XP_008441174.1\|	2.5e-111	81.40	PREDICTED: uncharacterized protein LOC103485388 isoform X2 [Cucumis melo]	[more]
gi\|225460065\|ref\|XP_002271557.1\|	2.5e-95	75.45	PREDICTED: uncharacterized protein LOC100253283 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010994	RuvA_2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000712	resolution of meiotic recombination intermediates
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004810.1	Lsi03G004810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010994	RuvA domain 2-like	unknown	SSF47781	RuvA domain 2-like	coord: 167..234 score: 1.2
None	No IPR available	GENE3D	G3DSA:1.10.150.20		coord: 182..232 score: 1.
None	No IPR available	PANTHER	PTHR37394	FAMILY NOT NAMED	coord: 18..242 score: 4.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004810	Csa2G401330	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004810	CSPI02G24680	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004810	Cucsa.088580	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004810	CmaCh15G000160	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004810	CmoCh15G000170	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004810	Cla011943	Watermelon (97103) v1	lsiwmB275
Lsi03G004810	MELO3C008090	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004810	ClCG11G008450	Watermelon (Charleston Gray)	lsiwcgB227
Lsi03G004810	MELO3C029791.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004810	Cla97C11G215090	Watermelon (97103) v2	lsiwmbB224
Lsi03G004810	Cp4.1LG13g11830	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004810	Carg22878	Silver-seed gourd	carlsiB986
Lsi03G004810	CsaV3_2G033200	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004810	Wax gourd	lsiwgoB322
Lsi03G004810	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004810	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004810	Cucurbita pepo (Zucchini)	cpelsiB171
Lsi03G004810	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004810	Cucurbita pepo (Zucchini)	cpelsiB454
Lsi03G004810	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004810	Silver-seed gourd	carlsiB017