Cucsa.088580 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.088580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DNA ligase-like protein
Location	scaffold00888 : 848543 .. 850796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTGGGGTCTGTTTGATGAGCAATGTATGGAGAGATGAGCAGCATCCATCCTTCATAAATTTCATATCAAATTTCCTTTGCTCAAACTCATTTCGCCTCAATTTTGTTCCAATTGCCCCAGTAATTTTTTTTTCTTTCACTTTTTCTGTATGTAAATTTCATTGACACCTTCTTTACGGTGTACTCATACCAATCACTTGTCTTAGGACTTGATATTCAATTGTGGTGGTTTATCAGTGGCTTTTGCTTTCCTGACAAGTTGGGAGTGCAGTAATACGTCGTCAATCTTTAGCAGGTAGCTTTGTTGTTTATGGCTTTTCTTTTTTGCTGGTTTTCCCTTTAGTTTTGTTCGATTCAGTCCGATCTTGACAGAGTTCAAAAGTTGAAGAAGCAATTTGCAAATTTGTATGTTGTTGTTGTCCTTCCAACCAAGGAGCAAAATGATTCATTTGTTCAATCTTACTTCAGGTAATTAGAGTCTGGTATCTTGAATGATTCCCTGCTTTATCTTTAATATATCTTTTTTAGAGAACTTACGTTTCTTTCCTTCCCCCTAAATCTCGTGAAGAAATGGGATGGAGATTGGTAAGCCACCATTTGTAGCTGTTCAGGATATTGAGATGGGGTTTGAGAAGATTGTAAAGATAGCACACTCTCGCGGAGGTAGTAACCATTTTAATTTTGGGTTGAATACTTTCCTCAACCATCTTCAATAACTATATCAAATTGCAGCATGCAAGCAGCAAGATATCATATCAAAACTGAGGACTGAGGTCGGTGTAGATTATATTCTACTTGAATTAGTAAAGACAATTCAATATCTAGTGCTCATGTTTTTTTACATGAGTTTTAATCACGTCTCCCTCTTTGGGGATCTTGTTGAAGAGGAAGAGATCAGTACAAGTCATGGATGCTTTTCGAAGGGTCATGTCTTCTGTACCAGGCCTTGATGATCATGATGCAAATTCGGTAAGTTAACCGGCTCGCATTCTTCATTTTCTGCTTATTTGTTCCTATCACTAGACATAGGTTTAGTTGGAAAAAACAGGGAGTTTTCTTAGTGGGAGCTCACGCATCATAGTACAACTCTTCCCTCAATATATATATATGAGTCCGGGAGAAGAGAAAAAGATCAAACAGGTCAACTAAAAAGTAACCAACTACGTACGGATACACCAAGTAACAGGTATTCATGCATATTTTGAAAATTCAAACGTGTTTTTAAAACGAGGTAATAACCTTTTACGTCCATATACCAACAGAATGGGTATTATTTTAAACTTGTTTTTAGTTTATGGGTATTATTGAAAGTTCAAATAAAGTACCAATTTTCACAATGGTATATTTTAATCTTTTTTCAAGTTTAAGGATATTATTAATTTTTTAAAAAAATTAGAGATATTTGTTAGGATATTATTAATTTTTAAAAAAAATTAGAGATATTTTTTAAACAAAGTACAAAGTTCATGGATATTTTCATATTTTAGCCTTACTTGAAACGGGAGGACAATGATTTTTTCTTTTTCACATCCATTAGTATTTTGGTCAACTTACATGCATCTTGACTAATCTCACGTAATAATCTGTCTAACTCTAGAACATTTTGGTATCAAGAAGAAAAACTGTAGGATATTAAATCTTAGGTAGGTGAGCACCATGGAATTCATGACCCCTTAGCCCTTTGCCATTTGCCATCTTTTTATGTTTAGATTGTCACTAGGCTAATTCATGATGTTGGAAGGACAATGACTTAAAACAATGCCACTGTCAACCTGTTTGTTCTAAGTCACAACCATAAAATGACAAGTCTTAATTTTCATCCAACTTTCTAGCAGAATTTTCATAGAAGATTCAAAGGCTAGTTTTGCTTATGTGATAAATGATAATCATATTCGCCATAAGTTCAACTAGATCGTAGGAAAGGGCTAAGAGATGGAAAATGACAATCATATTTTCTATAAGGTCACTAGATTGTAGCAAAGGGCTAAGAGATGAAAATATCTGGTCTTTTTAGTCAAACACGTGATGGTGCCAAATAGGAGGAAATATGATTTTTTTTTTGTGGATGTAAGCTTTTTTATTTGAACATCTCTACTATTCAGCTAAATCAAGCTATTGGTTCAATTGAGGCAATCGCCAAAGCATCGAAGGAGTACATTTTGGAGAACACAGATCTGTCAGTGGAGAAGGCAGAGAGAATTAGGAGCTTTTTCAGGGATCCAAAGTTGTACCTCAGTCCCAAAATAAATTGA

mRNA sequence

GTGGTGGGGTCTGTTTGATGAGCAATGTATGGAGAGATGAGCAGCATCCATCCTTCATAAATTTCATATCAAATTTCCTTTGCTCAAACTCATTTCGCCTCAATTTTGTTCCAATTGCCCCAGACTTGATATTCAATTGTGGTGGTTTATCAGTGGCTTTTGCTTTCCTGACAAGTTGGGAGTGCAGTAATACGTCGTCAATCTTTAGCAGAGTTCAAAAGTTGAAGAAGCAATTTGCAAATTTGTATGTTGTTGTTGTCCTTCCAACCAAGGAGCAAAATGATTCATTTGTTCAATCTTACTTCAGAAATGGGATGGAGATTGGTAAGCCACCATTTGTAGCTGTTCAGGATATTGAGATGGGGTTTGAGAAGATTGTAAAGATAGCACACTCTCGCGGAGCATGCAAGCAGCAAGATATCATATCAAAACTGAGGACTGAGAGGAAGAGATCAGTACAAGTCATGGATGCTTTTCGAAGGGTCATGTCTTCTGTACCAGGCCTTGATGATCATGATGCAAATTCGCTAAATCAAGCTATTGGTTCAATTGAGGCAATCGCCAAAGCATCGAAGGAGTACATTTTGGAGAACACAGATCTGTCAGTGGAGAAGGCAGAGAGAATTAGGAGCTTTTTCAGGGATCCAAAGTTGTACCTCAGTCCCAAAATAAATTGA

Coding sequence (CDS)

GTGGTGGGGTCTGTTTGATGAGCAATGTATGGAGAGATGAGCAGCATCCATCCTTCATAAATTTCATATCAAATTTCCTTTGCTCAAACTCATTTCGCCTCAATTTTGTTCCAATTGCCCCAGACTTGATATTCAATTGTGGTGGTTTATCAGTGGCTTTTGCTTTCCTGACAAGTTGGGAGTGCAGTAATACGTCGTCAATCTTTAGCAGAGTTCAAAAGTTGAAGAAGCAATTTGCAAATTTGTATGTTGTTGTTGTCCTTCCAACCAAGGAGCAAAATGATTCATTTGTTCAATCTTACTTCAGAAATGGGATGGAGATTGGTAAGCCACCATTTGTAGCTGTTCAGGATATTGAGATGGGGTTTGAGAAGATTGTAAAGATAGCACACTCTCGCGGAGCATGCAAGCAGCAAGATATCATATCAAAACTGAGGACTGAGAGGAAGAGATCAGTACAAGTCATGGATGCTTTTCGAAGGGTCATGTCTTCTGTACCAGGCCTTGATGATCATGATGCAAATTCGCTAAATCAAGCTATTGGTTCAATTGAGGCAATCGCCAAAGCATCGAAGGAGTACATTTTGGAGAACACAGATCTGTCAGTGGAGAAGGCAGAGAGAATTAGGAGCTTTTTCAGGGATCCAAAGTTGTACCTCAGTCCCAAAATAAATTGA

Protein sequence

GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWECSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN*

Homology

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BLAST of Cucsa.088580 vs. TrEMBL
Match: A0A0A0LMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401330 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 9.0e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE
Sbjct: 24  GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 83

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM
Sbjct: 84  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 143

Query: 121 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 180
           GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI
Sbjct: 144 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 203

Query: 181 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN
Sbjct: 204 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 247

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BLAST of Cucsa.088580 vs. TrEMBL
Match: F6HMY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03690 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 6.5e-97
Identity = 172/224 (76.79%), Postives = 200/224 (89.29%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVC+M N WRDEQHPSFINFIS+FL +NSFRLNFVPIAPD IFNCGGLSVAF F+T+W+
Sbjct: 25  GGVCMMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWD 84

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           C+N    FSRV+KLK+QFA+LY+VV LPT+EQNDSFV SYF+ GME+G+P FV VQD+EM
Sbjct: 85  CNNYLPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEM 144

Query: 121 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 180
           GFEKIVKIAH+RG CK+QD+ISKLR ERK+SVQ MD F RV++S+PG+D+HDANSLNQAI
Sbjct: 145 GFEKIVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAI 204

Query: 181 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           GSI+AIAKASK+YILENTDLS +KAE I  FFRDPK YLSPKIN
Sbjct: 205 GSIKAIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 248

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BLAST of Cucsa.088580 vs. TrEMBL
Match: B9GGV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38620g PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.6e-93
Identity = 168/223 (75.34%), Postives = 192/223 (86.10%), Query Frame = 1


Query: 2   GVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWEC 61
           GVC+M+  WRDEQHPSFINFI++FL +NSFRLNFVPIAPD IFNCGGLSVAF F+T+W+C
Sbjct: 19  GVCMMNTKWRDEQHPSFINFIASFLSANSFRLNFVPIAPDCIFNCGGLSVAFIFVTNWDC 78

Query: 62  SNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEMG 121
            N   IFSRV+KLK QFANLYVVV LP KEQNDSFV SYF+ GME+GKP FV VQD+EMG
Sbjct: 79  QNCEPIFSRVKKLKGQFANLYVVVSLPIKEQNDSFVHSYFKYGMELGKPTFVPVQDLEMG 138

Query: 122 FEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIG 181
           FEKIVKIAHSRG CK+QD +SKL+ ERK+SVQ M  F RV++S+PG+D+HDAN+LNQAIG
Sbjct: 139 FEKIVKIAHSRGTCKRQDALSKLKAERKQSVQGMGNFLRVVTSIPGIDNHDANALNQAIG 198

Query: 182 SIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           SIEAIAKASK YILENTDLS + AE +  FFRDPK YL PKIN
Sbjct: 199 SIEAIAKASKGYILENTDLSADNAETVTKFFRDPKFYLGPKIN 241

[Close]

BLAST of Cucsa.088580 vs. TrEMBL
Match: W9SXX2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012622 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.8e-92
Identity = 167/223 (74.89%), Postives = 193/223 (86.55%), Query Frame = 1


Query: 2   GVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWEC 61
           GVC+MSN W+ EQHPSFINFIS FL +NSFRLNFV IAPD IFNCGG SVAF FLT+W+C
Sbjct: 22  GVCMMSNTWKVEQHPSFINFISTFLNANSFRLNFVGIAPDFIFNCGGSSVAFIFLTNWDC 81

Query: 62  SNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEMG 121
           +N S +F R+QKL+ QFA+LYVV+ L TKEQNDSFV+SYF+ G E+GKP FV VQD+EMG
Sbjct: 82  TNVSPVFGRIQKLRLQFAHLYVVITLATKEQNDSFVRSYFKFGTELGKPTFVPVQDMEMG 141

Query: 122 FEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIG 181
           FEKIVKIAHS G CKQQD  +KL++ERK++VQ MD FR+V++S+PG+D HDAN+LNQAIG
Sbjct: 142 FEKIVKIAHSLGVCKQQDATTKLKSERKQAVQGMDVFRQVVTSIPGIDAHDANALNQAIG 201

Query: 182 SIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           SIEAIAKASKEYILENTDLS EKAE I  FFRDPK YLSPKIN
Sbjct: 202 SIEAIAKASKEYILENTDLSAEKAEVIFRFFRDPKFYLSPKIN 244

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BLAST of Cucsa.088580 vs. TrEMBL
Match: A0A067LMH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17216 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.8e-91
Identity = 163/222 (73.42%), Postives = 196/222 (88.29%), Query Frame = 1


Query: 2   GVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWEC 61
           GVC+M++ W+DEQHPSFINFIS+FL +N FRLNFVPI+PD IFNCGGLSVAF F+T W+C
Sbjct: 48  GVCMMNSKWKDEQHPSFINFISSFLAANCFRLNFVPISPDCIFNCGGLSVAFIFVTKWDC 107

Query: 62  SNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEMG 121
            N+  IF+RV+KLK QFANLYVVV LPTKE+NDSFV+SYF++GME+G+P FV VQD+EMG
Sbjct: 108 ENSMPIFNRVKKLKSQFANLYVVVSLPTKEKNDSFVRSYFKHGMEVGRPTFVPVQDLEMG 167

Query: 122 FEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIG 181
           FEKIVKIA SRGACK+QD++SKL+ ERK++VQ MD F R ++S+PG+D HDAN+L QAIG
Sbjct: 168 FEKIVKIALSRGACKKQDVMSKLKAERKQAVQGMDIFIRAITSIPGIDSHDANALIQAIG 227

Query: 182 SIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKI 224
           SIEAIAKASKE+ILENTDLS EKA+ I  FFRDP+ YLSPKI
Sbjct: 228 SIEAIAKASKEFILENTDLSAEKADIIAKFFRDPQFYLSPKI 269

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BLAST of Cucsa.088580 vs. TAIR10
Match: AT1G12790.1 (AT1G12790.1 RuvA domain 2-like (InterPro:IPR010994))

HSP 1 Score: 304.3 bits (778), Expect = 6.3e-83
Identity = 150/223 (67.26%), Postives = 179/223 (80.27%), Query Frame = 1


Query: 2   GVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWEC 61
           GVC+MSN W+ EQ PS INFIS FL +NSFRLNFV I PDLIFNCGG+S+AF F+T W+ 
Sbjct: 28  GVCIMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDF 87

Query: 62  SNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEMG 121
           SN +SIFSRV++LK QFA LYVV  L TKEQ+DSF++SYF+  ME GKP FV V D EMG
Sbjct: 88  SNVASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMG 147

Query: 122 FEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAIG 181
           FEKIVKIAHSRG CKQQ + SKL+ ERKR+VQ  + F R ++S+P ++ HDAN+L QAIG
Sbjct: 148 FEKIVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIG 207

Query: 182 SIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           SIEAIAKASKE IL NTDLS +KA+ +  FF+DP+ YLSPK N
Sbjct: 208 SIEAIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250

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BLAST of Cucsa.088580 vs. NCBI nr
Match: gi|449442112|ref|XP_004138826.1| (PREDICTED: uncharacterized protein LOC101220741 [Cucumis sativus])

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE
Sbjct: 24  GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 83

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM
Sbjct: 84  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 143

Query: 121 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 180
           GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI
Sbjct: 144 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 203

Query: 181 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN
Sbjct: 204 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 247

[Close]

BLAST of Cucsa.088580 vs. NCBI nr
Match: gi|659081144|ref|XP_008441175.1| (PREDICTED: uncharacterized protein LOC103485388 isoform X3 [Cucumis melo])

HSP 1 Score: 441.0 bits (1133), Expect = 1.2e-120
Identity = 221/224 (98.66%), Postives = 222/224 (99.11%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSW+
Sbjct: 20  GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWD 79

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM
Sbjct: 80  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 139

Query: 121 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 180
           GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI
Sbjct: 140 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 199

Query: 181 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPK YLS KIN
Sbjct: 200 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKFYLSLKIN 243

[Close]

BLAST of Cucsa.088580 vs. NCBI nr
Match: gi|659081136|ref|XP_008441171.1| (PREDICTED: uncharacterized protein LOC103485388 isoform X1 [Cucumis melo])

HSP 1 Score: 427.9 bits (1099), Expect = 1.1e-116
Identity = 221/247 (89.47%), Postives = 222/247 (89.88%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSW+
Sbjct: 20  GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWD 79

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM
Sbjct: 80  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 139

Query: 121 GFEKIVKIAHSRG-----------------------ACKQQDIISKLRTERKRSVQVMDA 180
           GFEKIVKIAHSRG                       ACKQQDIISKLRTERKRSVQVMDA
Sbjct: 140 GFEKIVKIAHSRGGSNHFKFWLNTFLNHLQQLYQITACKQQDIISKLRTERKRSVQVMDA 199

Query: 181 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKL 225
           FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPK 
Sbjct: 200 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKF 259

[Close]

BLAST of Cucsa.088580 vs. NCBI nr
Match: gi|659081142|ref|XP_008441174.1| (PREDICTED: uncharacterized protein LOC103485388 isoform X2 [Cucumis melo])

HSP 1 Score: 404.1 bits (1037), Expect = 1.6e-109
Identity = 212/247 (85.83%), Postives = 213/247 (86.23%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSW+
Sbjct: 20  GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWD 79

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM
Sbjct: 80  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 139

Query: 121 GFEKIVKIAHSRG-----------------------ACKQQDIISKLRTERKRSVQVMDA 180
           GFEKIVKIAHSRG                       ACKQQDIISKLRTERKRSVQVMDA
Sbjct: 140 GFEKIVKIAHSRGGSNHFKFWLNTFLNHLQQLYQITACKQQDIISKLRTERKRSVQVMDA 199

Query: 181 FRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKL 225
           FRRVMSSVPGLDDHDANS         AIAKASKEYILENTDLSVEKAERIRSFFRDPK 
Sbjct: 200 FRRVMSSVPGLDDHDANS---------AIAKASKEYILENTDLSVEKAERIRSFFRDPKF 257

[Close]

BLAST of Cucsa.088580 vs. NCBI nr
Match: gi|225460065|ref|XP_002271557.1| (PREDICTED: uncharacterized protein LOC100253283 isoform X2 [Vitis vinifera])

HSP 1 Score: 361.7 bits (927), Expect = 9.4e-97
Identity = 172/224 (76.79%), Postives = 200/224 (89.29%), Query Frame = 1


Query: 1   GGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVPIAPDLIFNCGGLSVAFAFLTSWE 60
           GGVC+M N WRDEQHPSFINFIS+FL +NSFRLNFVPIAPD IFNCGGLSVAF F+T+W+
Sbjct: 25  GGVCMMRNTWRDEQHPSFINFISSFLKANSFRLNFVPIAPDFIFNCGGLSVAFVFVTNWD 84

Query: 61  CSNTSSIFSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFRNGMEIGKPPFVAVQDIEM 120
           C+N    FSRV+KLK+QFA+LY+VV LPT+EQNDSFV SYF+ GME+G+P FV VQD+EM
Sbjct: 85  CNNYLPTFSRVKKLKEQFAHLYIVVTLPTREQNDSFVHSYFKLGMELGRPTFVPVQDMEM 144

Query: 121 GFEKIVKIAHSRGACKQQDIISKLRTERKRSVQVMDAFRRVMSSVPGLDDHDANSLNQAI 180
           GFEKIVKIAH+RG CK+QD+ISKLR ERK+SVQ MD F RV++S+PG+D+HDANSLNQAI
Sbjct: 145 GFEKIVKIAHARGVCKRQDVISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAI 204

Query: 181 GSIEAIAKASKEYILENTDLSVEKAERIRSFFRDPKLYLSPKIN 225
           GSI+AIAKASK+YILENTDLS +KAE I  FFRDPK YLSPKIN
Sbjct: 205 GSIKAIAKASKDYILENTDLSSDKAETITRFFRDPKFYLSPKIN 248

The following BLAST results are available for this feature:

BLAST of Cucsa.088580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMP7_CUCSA	9.0e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401330 PE=4 SV=1	[more]
F6HMY0_VITVI	6.5e-97	76.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03690 PE=4 SV=...	[more]
B9GGV5_POPTR	2.6e-93	75.34	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38620g PE=4 SV=1	[more]
W9SXX2_9ROSA	4.8e-92	74.89	Uncharacterized protein OS=Morus notabilis GN=L484_012622 PE=4 SV=1	[more]
A0A067LMH0_JATCU	1.8e-91	73.42	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17216 PE=4 SV=1	[more]

BLAST of Cucsa.088580 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12790.1	6.3e-83	67.26	RuvA domain 2-like (InterPro:IPR010994)	[more]

BLAST of Cucsa.088580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442112\|ref\|XP_004138826.1\|	1.3e-122	100.00	PREDICTED: uncharacterized protein LOC101220741 [Cucumis sativus]	[more]
gi\|659081144\|ref\|XP_008441175.1\|	1.2e-120	98.66	PREDICTED: uncharacterized protein LOC103485388 isoform X3 [Cucumis melo]	[more]
gi\|659081136\|ref\|XP_008441171.1\|	1.1e-116	89.47	PREDICTED: uncharacterized protein LOC103485388 isoform X1 [Cucumis melo]	[more]
gi\|659081142\|ref\|XP_008441174.1\|	1.6e-109	85.83	PREDICTED: uncharacterized protein LOC103485388 isoform X2 [Cucumis melo]	[more]
gi\|225460065\|ref\|XP_002271557.1\|	9.4e-97	76.79	PREDICTED: uncharacterized protein LOC100253283 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010994	RuvA_2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000712	resolution of meiotic recombination intermediates
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.088580.1	Cucsa.088580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010994	RuvA domain 2-like	unknown	SSF47781	RuvA domain 2-like	coord: 149..216 score: 8.8
None	No IPR available	GENE3D	G3DSA:1.10.150.20		coord: 164..214 score: 1.
None	No IPR available	PANTHER	PTHR37394	FAMILY NOT NAMED	coord: 2..224 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.088580	Cla011943	Watermelon (97103) v1	cgywmB101
Cucsa.088580	Csa2G401330	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.088580	MELO3C008090	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.088580	ClCG11G008450	Watermelon (Charleston Gray)	cgywcgB097
Cucsa.088580	CSPI02G24680	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.088580	CmaCh15G000160	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.088580	CmoCh15G000170	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.088580	Lsi03G004810	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.088580	Cp4.1LG13g11830	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.088580	MELO3C029791.2	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.088580	CsaV3_2G033200	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.088580	Cla97C11G215090	Watermelon (97103) v2	cgywmbB097
Cucsa.088580	Carg22878	Silver-seed gourd	carcgyB1196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.088580	Silver-seed gourd	carcgyB0016
Cucsa.088580	Wax gourd	cgywgoB111
Cucsa.088580	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.088580	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.088580	Cucurbita pepo (Zucchini)	cgycpeB0164