Lsi03G003900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G003900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Blue copper protein
Location	chr03 : 4531986 .. 4532739 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCTGCTGTAGCTTTAATGGCGGAAAAGGGTTTGGCAGATCAAAGACATATGGTTGGAGGAAGCCAAGGTTGGGACGAATCCGTTGATTTTGACTCTTGGACTTCTGCTCAAACCTTCAAAGTTGGTGATCAAATTGGTATGTAAATATATTTAACTTTTTTATTAATTAAACCTATGTGAAAAATTATTATGATGACATAGAAATTTCTCCTCCCTCAATTACAAAGAAAATACTCTCTCAGAGCGTTTGTACCACTTACATCAATTTCTCAAAGCTAAGATACATAATCTTAAAGTGTTTCTAACTGAGACGTTTTGAAACTAAAGTATAGACTTGAAAGCCATCACTTTTTTGAATTCTTTTGATGGACAACAAACTACATTTTTAATATTTTGTCAAAACTGAACAGTTTTCAAGTACGATTCGGGGTTGCACAGTGTGGTAGAGCTTCCAGATGAGAGTTCATATAAGAACTGCGACATTGGGAATTCAATTGAATCAAAGAGTAGTGGGAACGATGCAATCAAATTGACCAAATCTGGGACTCGCTACTTTGCTTGTGGTACCATCGGCCATTGCAGCCAAGGAATGAAGGTGAAGGTCAGGATAGCCACTGGCACTGCTTCCTCTACTCCATCCTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAATTCACATTATTCTCTTTTGGGTTGCTTCCTTATGCTGCTGCCTTTCTACGCCTTGAGATTCATGTGA

mRNA sequence

ATGATTGCTGCTGTAGCTTTAATGGCGGAAAAGGGTTTGGCAGATCAAAGACATATGGTTGGAGGAAGCCAAGATGAGAGTTCATATAAGAACTGCGACATTGGGAATTCAATTGAATCAAAGAGTAGTGGGAACGATGCAATCAAATTGACCAAATCTGGGACTCGCTACTTTGCTTGTGGTACCATCGGCCATTGCAGCCAAGGAATGAAGGTGAAGGTCAGGATAGCCACTGGCACTGCTTCCTCTACTCCATCCTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAATTCACATTATTCTCTTTTGGGTTGCTTCCTTATGCTGCTGCCTTTCTACGCCTTGAGATTCATGTGA

Coding sequence (CDS)

ATGATTGCTGCTGTAGCTTTAATGGCGGAAAAGGGTTTGGCAGATCAAAGACATATGGTTGGAGGAAGCCAAGATGAGAGTTCATATAAGAACTGCGACATTGGGAATTCAATTGAATCAAAGAGTAGTGGGAACGATGCAATCAAATTGACCAAATCTGGGACTCGCTACTTTGCTTGTGGTACCATCGGCCATTGCAGCCAAGGAATGAAGGTGAAGGTCAGGATAGCCACTGGCACTGCTTCCTCTACTCCATCCTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAATTCACATTATTCTCTTTTGGGTTGCTTCCTTATGCTGCTGCCTTTCTACGCCTTGAGATTCATGTGA

Protein sequence

MIAAVALMAEKGLADQRHMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIATGTASSTPSSPSSSSSSSSSSSNSHYSLLGCFLMLLPFYALRFM

Homology

[Close]

BLAST of Lsi03G003900 vs. Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-07
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 26  ESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMK--VKVRIATGTASS 85
           ES YK+C  GNSI + S+G   I L K+G  YF CG  GH + GMK  +KV+ ++G++++
Sbjct: 72  ESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKVKASSGSSAA 131

Query: 86  TPSSPSSSSSSSSSSSNS 102
             ++PSSS   S SS ++
Sbjct: 132 PSATPSSSGKGSPSSDDT 149

[Close]

BLAST of Lsi03G003900 vs. Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 25  DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRI-ATGTASS 84
           D++ Y NCD   + ++ + G+  I LT  GT +F C T GHC  GMK+ V + A   + S
Sbjct: 67  DKAGYDNCDSSGATQNFADGDTKIDLTTVGTMHFLCPTFGHCKNGMKLAVPVLAAAPSPS 126

Query: 85  TPSSPSSSSSSSSS 98
           TPSSP S+ S+ SS
Sbjct: 127 TPSSPPSTPSTPSS 140

[Close]

BLAST of Lsi03G003900 vs. Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.0e-06
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 25  DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIATGTASS 84
           D+  +K+C+  +   S +SG D+I L + GT YF CG  GHC  G KV++++  G++S+
Sbjct: 50  DQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 108

[Close]

BLAST of Lsi03G003900 vs. TrEMBL
Match: A0A0A0LQ69_CUCSA (Blue copper protein OS=Cucumis sativus GN=Csa_2G406720 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 104/159 (65.41%), Postives = 108/159 (67.92%), Query Frame = 1


Query: 1   MIAAVALMAEKGLADQRHMVGGSQ------------------------------------ 60
           MI   ALMAE  LADQRHMVGGSQ                                    
Sbjct: 19  MIVGAALMAEMSLADQRHMVGGSQGWQESVDFDSWASSQTFKVGDQIVFKYDSSLHSVVE 78

Query: 61  --DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIATGTAS 120
             DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVK++IATG+AS
Sbjct: 79  LSDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKIKIATGSAS 138

Query: 121 STPSSPSSSSSSSSSSSNSHYSLLGCFLMLLPFYALRFM 122
           STPSSP   SSSSSSSSNS YSL+G  L LLPFYALR M
Sbjct: 139 STPSSP---SSSSSSSSNSPYSLMGFILTLLPFYALRSM 174

[Close]

BLAST of Lsi03G003900 vs. TrEMBL
Match: A0A151REF0_CAJCA (Blue copper protein OS=Cajanus cajan GN=KK1_037617 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V     ES YKNCDIGN++ S SSGND +KL+K GTRYFACGT+GHC QGMKVK++  
Sbjct: 62  HSVVELGSESEYKNCDIGNAVNSMSSGNDVVKLSKPGTRYFACGTLGHCGQGMKVKIKTV 121

Query: 78  TGTASSTPSSPSSSSSSSSSSSNSHYSLLGCFLMLL 114
           +G +SS+ SS SSSS +SSS+S    SL+    ML+
Sbjct: 122 SGNSSSSSSSSSSSSPASSSASQGFISLVLIVAMLI 157

[Close]

BLAST of Lsi03G003900 vs. TrEMBL
Match: W9S8C4_9ROSA (Blue copper protein OS=Morus notabilis GN=L484_017614 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V    +E++YKNC+I ++++SKSSGND +KL K GTRYFACGT GHC  GMKVK+   
Sbjct: 63  HSVAELANENAYKNCEISSALDSKSSGNDVVKLNKPGTRYFACGTSGHCQGGMKVKITTV 122

Query: 78  TGTASSTPSSPSSSSSSSSSSS 100
           +G+A STP+SPSSSSSSS SSS
Sbjct: 123 SGSAPSTPASPSSSSSSSPSSS 144

[Close]

BLAST of Lsi03G003900 vs. TrEMBL
Match: V7CWU5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G095100g PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-18
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V     ES YKNCD+GN++ S SSGND +KL K G RYFACGT+GHC QGMKVK+   
Sbjct: 63  HSVVELGSESEYKNCDLGNTVNSMSSGNDVVKLNKPGARYFACGTLGHCGQGMKVKITTV 122

Query: 78  TGTASSTPSSPSSSSSSSSSSSNSHYSLL 107
           +GT+S   SS SSSSSSSSSS++  +S L
Sbjct: 123 SGTSSPASSSSSSSSSSSSSSASQCFSSL 151

[Close]

BLAST of Lsi03G003900 vs. TrEMBL
Match: B9GJS1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33960g PE=4 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-18
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V     ES+YK+C +G ++ S ++GND +KL K GTRYFACGT+GHC QGMKVK+ + 
Sbjct: 62  HSVVELGGESAYKSCGLGTALNSMNTGNDVVKLNKPGTRYFACGTLGHCGQGMKVKITVE 121

Query: 78  TGTASSTPSSPSSSSSSSSSSSNSHYSLLGCFLMLLPFYA 118
           +GTA STP SPSSSSS ++SS+++ +S    F++L    A
Sbjct: 122 SGTAPSTPESPSSSSSPAASSASAMHSYFATFVLLTALVA 161

[Close]

BLAST of Lsi03G003900 vs. TAIR10
Match: AT3G27200.1 (AT3G27200.1 Cupredoxin superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 6.5e-18
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V     E++YK+CD+G S+ S SSGND +KL+K+GTRYFACGT+GHC QGMK+KV + 
Sbjct: 63  HSVVELGSETAYKSCDLGTSVNSLSSGNDVVKLSKTGTRYFACGTVGHCEQGMKIKVNVV 122

Query: 78  TGTASSTPSSPSSSSSSSSSSSNS 102
           +  + S  SSPS S S S S S S
Sbjct: 123 SSDSKSA-SSPSGSGSGSDSGSGS 145

[Close]

BLAST of Lsi03G003900 vs. TAIR10
Match: AT1G22480.1 (AT1G22480.1 Cupredoxin superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-10
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 26  ESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIAT------- 85
           E+ YK+C +GNSI S SSG   I LT +G RYF CG  GHC+ GMK+ V +A+       
Sbjct: 63  ENDYKSCTLGNSITSDSSGTTTIALTTTGPRYFICGIPGHCAAGMKLAVTVASNSSNGVA 122

[Close]

BLAST of Lsi03G003900 vs. TAIR10
Match: AT3G60280.1 (AT3G60280.1 uclacyanin 3)

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-08
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 25  DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRI-ATGTASS 84
           D++ Y NCD   + ++ + G+  I LT  GT +F C T GHC  GMK+ V + A   + S
Sbjct: 67  DKAGYDNCDSSGATQNFADGDTKIDLTTVGTMHFLCPTFGHCKNGMKLAVPVLAAAPSPS 126

Query: 85  TPSSPSSSSSSSSS 98
           TPSSP S+ S+ SS
Sbjct: 127 TPSSPPSTPSTPSS 140

[Close]

BLAST of Lsi03G003900 vs. TAIR10
Match: AT1G72230.1 (AT1G72230.1 Cupredoxin superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.4e-06
Identity = 34/100 (34.00%), Postives = 49/100 (49.00%), Query Frame = 1


Query: 26  ESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRI-------AT 85
           ES YK+C +GN+I S SSG  +I L   G  YF CG  GHC+ GMK+ V +       +T
Sbjct: 67  ESDYKSCTLGNAISSDSSGTTSIALKTPGPHYFICGIPGHCTGGMKLSVIVPAASSGGST 126

Query: 86  GTASSTPSSPSSSSSSSSSSSNSHYSLLGCFLMLLPFYAL 119
           G  ++  ++P     ++ S             +L P  AL
Sbjct: 127 GDGTTDKNTPVQDGKTTPSEGKKASPSASATAVLKPLDAL 166

[Close]

BLAST of Lsi03G003900 vs. TAIR10
Match: AT3G60270.1 (AT3G60270.1 Cupredoxin superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.7e-06
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 25  DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIATGTASST 84
           +++ Y  C+     +S S G+  I LTK G  +F C T GHCS GMK+ V++    +   
Sbjct: 69  NKADYDGCETSRPTQSFSDGDTKIDLTKVGAIHFLCLTPGHCSLGMKLAVQVLAAVSLEP 128

Query: 85  PSSPSSSSSSSSSSSNS 102
           P SPS+ S S S+ S S
Sbjct: 129 PPSPSAPSPSPSAPSPS 145

[Close]

BLAST of Lsi03G003900 vs. NCBI nr
Match: gi|659081467|ref|XP_008441346.1| (PREDICTED: mavicyanin-like [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 3.0e-41
Identity = 107/159 (67.30%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 1   MIAAVALMAEKGLADQRHMVGGSQ------------------------------------ 60
           MI   ALMAE GLADQRHMVGGSQ                                    
Sbjct: 17  MIVGAALMAEMGLADQRHMVGGSQGWQESVDFDSWASSQTFKVGDQIVFKYDSSLHSVVE 76

Query: 61  --DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIATGTAS 120
             +ESSYKNCDIGNSIESKSSGND IKLTKSGTRYFACGTIGHCSQGMKVK++IATGTAS
Sbjct: 77  LPEESSYKNCDIGNSIESKSSGNDVIKLTKSGTRYFACGTIGHCSQGMKVKIKIATGTAS 136

Query: 121 STPSSPSSSSSSSSSSSNSHYSLLGCFLMLLPFYALRFM 122
           STPSSPSSSSSSSSS   SHYSL+G FLMLLPFY LRFM
Sbjct: 137 STPSSPSSSSSSSSS---SHYSLMGFFLMLLPFYVLRFM 172

[Close]

BLAST of Lsi03G003900 vs. NCBI nr
Match: gi|778673274|ref|XP_004138792.2| (PREDICTED: mavicyanin-like [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-38
Identity = 104/159 (65.41%), Postives = 108/159 (67.92%), Query Frame = 1


Query: 1   MIAAVALMAEKGLADQRHMVGGSQ------------------------------------ 60
           MI   ALMAE  LADQRHMVGGSQ                                    
Sbjct: 19  MIVGAALMAEMSLADQRHMVGGSQGWQESVDFDSWASSQTFKVGDQIVFKYDSSLHSVVE 78

Query: 61  --DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIATGTAS 120
             DESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVK++IATG+AS
Sbjct: 79  LSDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKIKIATGSAS 138

Query: 121 STPSSPSSSSSSSSSSSNSHYSLLGCFLMLLPFYALRFM 122
           STPSSP   SSSSSSSSNS YSL+G  L LLPFYALR M
Sbjct: 139 STPSSP---SSSSSSSSNSPYSLMGFILTLLPFYALRSM 174

[Close]

BLAST of Lsi03G003900 vs. NCBI nr
Match: gi|1012329433|gb|KYP41014.1| (Blue copper protein [Cajanus cajan])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V     ES YKNCDIGN++ S SSGND +KL+K GTRYFACGT+GHC QGMKVK++  
Sbjct: 62  HSVVELGSESEYKNCDIGNAVNSMSSGNDVVKLSKPGTRYFACGTLGHCGQGMKVKIKTV 121

Query: 78  TGTASSTPSSPSSSSSSSSSSSNSHYSLLGCFLMLL 114
           +G +SS+ SS SSSS +SSS+S    SL+    ML+
Sbjct: 122 SGNSSSSSSSSSSSSPASSSASQGFISLVLIVAMLI 157

[Close]

BLAST of Lsi03G003900 vs. NCBI nr
Match: gi|703156916|ref|XP_010111589.1| (Blue copper protein [Morus notabilis])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V    +E++YKNC+I ++++SKSSGND +KL K GTRYFACGT GHC  GMKVK+   
Sbjct: 63  HSVAELANENAYKNCEISSALDSKSSGNDVVKLNKPGTRYFACGTSGHCQGGMKVKITTV 122

Query: 78  TGTASSTPSSPSSSSSSSSSSS 100
           +G+A STP+SPSSSSSSS SSS
Sbjct: 123 SGSAPSTPASPSSSSSSSPSSS 144

[Close]

BLAST of Lsi03G003900 vs. NCBI nr
Match: gi|593797416|ref|XP_007161746.1| (hypothetical protein PHAVU_001G095100g [Phaseolus vulgaris])

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 18  HMVGGSQDESSYKNCDIGNSIESKSSGNDAIKLTKSGTRYFACGTIGHCSQGMKVKVRIA 77
           H V     ES YKNCD+GN++ S SSGND +KL K G RYFACGT+GHC QGMKVK+   
Sbjct: 63  HSVVELGSESEYKNCDLGNTVNSMSSGNDVVKLNKPGARYFACGTLGHCGQGMKVKITTV 122

Query: 78  TGTASSTPSSPSSSSSSSSSSSNSHYSLL 107
           +GT+S   SS SSSSSSSSSS++  +S L
Sbjct: 123 SGTSSPASSSSSSSSSSSSSSASQCFSSL 151

The following BLAST results are available for this feature:

BLAST of Lsi03G003900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BCP_PEA	1.7e-07	43.59	Blue copper protein OS=Pisum sativum PE=2 SV=1	[more]
BCB3_ARATH	1.4e-06	43.24	Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1	[more]
MAVI_CUCPE	7.0e-06	38.98	Mavicyanin OS=Cucurbita pepo PE=1 SV=1	[more]

BLAST of Lsi03G003900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ69_CUCSA	1.7e-38	65.41	Blue copper protein OS=Cucumis sativus GN=Csa_2G406720 PE=4 SV=1	[more]
A0A151REF0_CAJCA	1.1e-18	58.33	Blue copper protein OS=Cajanus cajan GN=KK1_037617 PE=4 SV=1	[more]
W9S8C4_9ROSA	2.5e-18	63.41	Blue copper protein OS=Morus notabilis GN=L484_017614 PE=4 SV=1	[more]
V7CWU5_PHAVU	4.2e-18	60.67	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G095100g PE=4 SV=1	[more]
B9GJS1_POPTR	5.5e-18	52.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33960g PE=4 SV=2	[more]

BLAST of Lsi03G003900 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27200.1	6.5e-18	55.95	Cupredoxin superfamily protein	[more]
AT1G22480.1	2.2e-10	48.53	Cupredoxin superfamily protein	[more]
AT3G60280.1	7.9e-08	43.24	uclacyanin 3	[more]
AT1G72230.1	7.4e-06	34.00	Cupredoxin superfamily protein	[more]
AT3G60270.1	9.7e-06	38.96	Cupredoxin superfamily protein	[more]

BLAST of Lsi03G003900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081467\|ref\|XP_008441346.1\|	3.0e-41	67.30	PREDICTED: mavicyanin-like [Cucumis melo]	[more]
gi\|778673274\|ref\|XP_004138792.2\|	2.4e-38	65.41	PREDICTED: mavicyanin-like [Cucumis sativus]	[more]
gi\|1012329433\|gb\|KYP41014.1\|	1.6e-18	58.33	Blue copper protein [Cajanus cajan]	[more]
gi\|703156916\|ref\|XP_010111589.1\|	3.6e-18	63.41	Blue copper protein [Morus notabilis]	[more]
gi\|593797416\|ref\|XP_007161746.1\|	6.1e-18	60.67	hypothetical protein PHAVU_001G095100g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR008972	Cupredoxin
IPR003245	Phytocyanin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0045491	xylan metabolic process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003900.1	Lsi03G003900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 26..76 score: 8.0
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 18..70 score: 3.5
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 1..78 score: 20
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 16..77 score: 1.4
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 25..76 score: 1.97
None	No IPR available	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 25..104 score: 3.7
None	No IPR available	PANTHER	PTHR33021:SF50	SUBFAMILY NOT NAMED	coord: 25..104 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G003900	Csa2G406720	Cucumber (Chinese Long) v2	culsiB115
Lsi03G003900	CSPI02G25670	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G003900	Cucsa.087690	Cucumber (Gy14) v1	cgylsiB098
Lsi03G003900	CmaCh04G029610	Cucurbita maxima (Rimu)	cmalsiB663
Lsi03G003900	Cla006511	Watermelon (97103) v1	lsiwmB277
Lsi03G003900	MELO3C008198	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G003900	ClCG11G007050	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G003900	MELO3C008198.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G003900	Cla97C11G213980	Watermelon (97103) v2	lsiwmbB222
Lsi03G003900	Bhi04G001981	Wax gourd	lsiwgoB322
Lsi03G003900	Cp4.1LG01g25800	Cucurbita pepo (Zucchini)	cpelsiB344
Lsi03G003900	CsGy2G025300	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G003900	Carg06035	Silver-seed gourd	carlsiB018
Lsi03G003900	CsaV3_2G034170	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G003900	Silver-seed gourd	carlsiB017
Lsi03G003900	Silver-seed gourd	carlsiB924
Lsi03G003900	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G003900	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G003900	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G003900	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G003900	Cucurbita moschata (Rifu)	cmolsiB654
Lsi03G003900	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G003900	Cucurbita pepo (Zucchini)	cpelsiB339