Lsi03G003310 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G003310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 3952993 .. 3954648 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTGGGTTAACAAATTGAAGAAGAATGAGACCCACTATCAATAGATTTAGGTAGCTTATGCAAGTCCCAAAGATTACACACAAAAGACACATCTTCCATGGGAGGAAATAGAGTAAAGGGAGTAATTGTGGAGCTCTTAGGAGAATTAACAAGAATTATGTGAATGATATAACTTACATTGTCAACCTATGGAAGATCATGTGAGTGATTGAAATATACTGGGTATAGAGCTAGAAGATAAACCATGTAATTTGAGGTACTTGGACTCTCCTTTCTTGAGATTACTCAAGCTCTCAACCTGGGCCGACTGAATCAATACCTAACTCCCTCCTTTTCCATTTTTCAAATTGTTTTTGCTTGTTCCCTTTCTTCCGATTTAACAATGGGTTGAAATTAGTTGTGCTTGTTTAAAACTAGGTCTGTAACAGTGCCTGACTCCGTTGAGAAGGGCTTGGAATCTCTTGGTCATATAGGCTTAGATGTCCCAAGTTCAAACCTTCCAATAGATAACAACTCAAATTAATTAAACCTACAAGGGTTGGAACATTTTAGTTATAGGTTCGAACCTATCTCATCTAAGAAGTCTCAGGTTCCAATTCCTCTGCCTCCCTGCTATGTAATGTTCATAAACACAACTTGTAAAGCCAAGGAAAGGAGTTTGAAATCGACATCGTTTTTGTCCTTTCAATTAATAACCAAACCATCCGAACTCGAAAAGACTGCCACTTCGAACCTGTCGAGAAATGTTGCCTACATTCATCATGATATTGTAATTTATGTGGCGGGTCCGCCGCCCCCTCAATAATCCTTGTCGTCATTGCCACGTTATAGTGAATATTCCATAGGATTTTGTGATACCCTCAATTCTCCTCGTTGCAAATTCACGTTCAGGTCTCCCTCTGACGGGGCCCATTATAATCAGCCATAGGATTGTGGAGAACTGTCCTCGGACAGATCCCGGCTACGACCACGCGGCGGATGGTTCAACTTTTTGAAACTTCAATTCCAAAAACTTGTCCCAGTTTCTCTCGCCAGCTTACAAGCCAGGCGTGAGATTAATTTGGACAGATGACACAGATCTTACTGTTTTCATCATCTGCAATACTTTCCCCCTTCAATGGTATCTTCCATAATCTCTCTTTCCCTTGTTTGCAGTGAAAATTTTTCTTTCTGGGTCATTGAGATGAAGCCAATATGTCTGGATCCTCTGTTTCTTTTTGGTGTTTCATAGTTTCATATGCTGATGGTTGGTCATTTTTATTTGGGGATTTCCAGAGAGAAAGCAGAGATGGAGCAAAAAGCTAATTTGTTCTTCAAGACAACATGTGTGGACTGAATCATCGCTGTTCAAATCTCGAAGCAAAAGTGGGTTTAGAAAATTTAGAGCTTCCAATTCAACAGCAGGAAGTTATGGCGGATCTGCTGAGATATCTAAAGGTCAACCGGCGCCATGGCTTTCCACGTGGCCAAGCAAACAGGTTAGAACTTCCAAGTTGCAATCCCCCATCTCTCTCCCCTTTCCTCACCACTACGCTTCTCAGATCCTAATTCCTTTCAGTAAGGTCAACTCCATAAAATTTGCATATCCCACACTCTTGTCAAACAAGTTTGCAATTACTTTTTCTAGCAAAAATACTATTGGTTTTTTATAA

mRNA sequence

ATGTCGTGGGTTCCAATTCCTCTGCCTCCCTGCTATGTAATGTTCATAAACACAACTTGTAAAGCCAAGGAAAGGAGTTTGAAATCGACATCGTTTTTGTCCTTTCAATTAATAACCAAACCATCCGAACTCGAAAAGACTGCCACTTCGAACCTGTCGAGAAATGTTGCCTACATTCATCATGATATTGATTTTGTGATACCCTCAATTCTCCTCGTTGCAAATTCACGTTCAGGTCTCCCTCTGACGGGGCCCATTATAATCAGCCATAGGATTGTGGAGAACTGTCCTCGGACAGATCCCGGCTACGACCACGCGGCGGATGAGAGAAAGCAGAGATGGAGCAAAAAGCTAATTTGTTCTTCAAGACAACATGTGTGGACTGAATCATCGCTGTTCAAATCTCGAAGCAAAAGTGGGTTTAGAAAATTTAGAGCTTCCAATTCAACAGCAGGAAGTTATGGCGGATCTGCTGAGATATCTAAAGGTCAACCGGCGCCATGGCTTTCCACGTGGCCAAGCAAACAGGTTAGAACTTCCAAGTTGCAATCCCCCATCTCTCTCCCCTTTCCTCACCACTACGCTTCTCAGATCCTAATTCCTTTCAGTAAGGTCAACTCCATAAAATTTGCATATCCCACACTCTTGTCAAACAAGTTTGCAATTACTTTTTCTAGCAAAAATACTATTGGTTTTTTATAA

Coding sequence (CDS)

ATGTCGTGGGTTCCAATTCCTCTGCCTCCCTGCTATGTAATGTTCATAAACACAACTTGTAAAGCCAAGGAAAGGAGTTTGAAATCGACATCGTTTTTGTCCTTTCAATTAATAACCAAACCATCCGAACTCGAAAAGACTGCCACTTCGAACCTGTCGAGAAATGTTGCCTACATTCATCATGATATTGATTTTGTGATACCCTCAATTCTCCTCGTTGCAAATTCACGTTCAGGTCTCCCTCTGACGGGGCCCATTATAATCAGCCATAGGATTGTGGAGAACTGTCCTCGGACAGATCCCGGCTACGACCACGCGGCGGATGAGAGAAAGCAGAGATGGAGCAAAAAGCTAATTTGTTCTTCAAGACAACATGTGTGGACTGAATCATCGCTGTTCAAATCTCGAAGCAAAAGTGGGTTTAGAAAATTTAGAGCTTCCAATTCAACAGCAGGAAGTTATGGCGGATCTGCTGAGATATCTAAAGGTCAACCGGCGCCATGGCTTTCCACGTGGCCAAGCAAACAGGTTAGAACTTCCAAGTTGCAATCCCCCATCTCTCTCCCCTTTCCTCACCACTACGCTTCTCAGATCCTAATTCCTTTCAGTAAGGTCAACTCCATAAAATTTGCATATCCCACACTCTTGTCAAACAAGTTTGCAATTACTTTTTCTAGCAAAAATACTATTGGTTTTTTATAA

Protein sequence

MSWVPIPLPPCYVMFINTTCKAKERSLKSTSFLSFQLITKPSELEKTATSNLSRNVAYIHHDIDFVIPSILLVANSRSGLPLTGPIIISHRIVENCPRTDPGYDHAADERKQRWSKKLICSSRQHVWTESSLFKSRSKSGFRKFRASNSTAGSYGGSAEISKGQPAPWLSTWPSKQVRTSKLQSPISLPFPHHYASQILIPFSKVNSIKFAYPTLLSNKFAITFSSKNTIGFL
Homology
[Close]
BLAST of Lsi03G003310 vs. TrEMBL
Match: A0A0A0K8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G009470 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 110 RKQRWSKKLICSSRQHVWTESSLFKSRSKSGFRKFRASNSTAGSYGGSAEISKGQPAPWL 169
           R+QRW KK+IC SRQHVW +S L   +S SGFRK RASNSTAGSYGGSAEISKGQP  W+
Sbjct: 37  REQRWRKKIICCSRQHVWDKSLL---QSNSGFRKIRASNSTAGSYGGSAEISKGQPLAWI 96

Query: 170 STWPSKQVR 179
           STWP+KQ +
Sbjct: 97  STWPNKQTQ 102

[Close]
BLAST of Lsi03G003310 vs. NCBI nr
Match: gi|659081624|ref|XP_008441429.1| (PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1 

Query: 108 DERKQRWSKKLICSSRQHVWTESSLFKSRSKSGFRKFRASNSTAGSYGGSAEISKGQPAP 167
           +ER+QRW KK+IC SRQHVW ES L   +S  GFRKFRASNSTAGSYGGSAEISKGQP P
Sbjct: 17  NEREQRWRKKVICCSRQHVWDESLL---QSNGGFRKFRASNSTAGSYGGSAEISKGQPLP 76

Query: 168 WLSTWPSKQVR 179
           W+STWP+KQ +
Sbjct: 77  WISTWPNKQTQ 84

[Close]
BLAST of Lsi03G003310 vs. NCBI nr
Match: gi|700190564|gb|KGN45768.1| (hypothetical protein Csa_6G009470 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 110 RKQRWSKKLICSSRQHVWTESSLFKSRSKSGFRKFRASNSTAGSYGGSAEISKGQPAPWL 169
           R+QRW KK+IC SRQHVW +S L   +S SGFRK RASNSTAGSYGGSAEISKGQP  W+
Sbjct: 37  REQRWRKKIICCSRQHVWDKSLL---QSNSGFRKIRASNSTAGSYGGSAEISKGQPLAWI 96

Query: 170 STWPSKQVR 179
           STWP+KQ +
Sbjct: 97  STWPNKQTQ 102

[Close]
BLAST of Lsi03G003310 vs. NCBI nr
Match: gi|778709446|ref|XP_004138435.2| (PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 110 RKQRWSKKLICSSRQHVWTESSLFKSRSKSGFRKFRASNSTAGSYGGSAEISKGQPAPWL 169
           R+QRW KK+IC SRQHVW +S L   +S SGFRK RASNSTAGSYGGSAEISKGQP  W+
Sbjct: 19  REQRWRKKIICCSRQHVWDKSLL---QSNSGFRKIRASNSTAGSYGGSAEISKGQPLAWI 78

Query: 170 STWPSKQVR 179
           STWP+KQ +
Sbjct: 79  STWPNKQTQ 84

The following BLAST results are available for this feature:
BLAST of Lsi03G003310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G003310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8G8_CUCSA1.6e-1872.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G009470 PE=4 SV=1[more]
BLAST of Lsi03G003310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G003310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081624|ref|XP_008441429.1|1.5e-2074.65PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Cucumis me... [more]
gi|700190564|gb|KGN45768.1|2.4e-1872.46hypothetical protein Csa_6G009470 [Cucumis sativus][more]
gi|778709446|ref|XP_004138435.2|2.4e-1872.46PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Cucumis sa... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G003310.1Lsi03G003310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G003310CsGy6G001530Cucumber (Gy14) v2cgyblsiB409
Lsi03G003310Carg05993Silver-seed gourdcarlsiB017
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G003310Watermelon (97103) v2lsiwmbB219
Lsi03G003310Watermelon (97103) v2lsiwmbB222
Lsi03G003310Watermelon (97103) v2lsiwmbB234
Lsi03G003310Watermelon (97103) v2lsiwmbB242
Lsi03G003310Wax gourdlsiwgoB297
Lsi03G003310Wax gourdlsiwgoB322
Lsi03G003310Wax gourdlsiwgoB338
Lsi03G003310Bottle gourd (USVL1VR-Ls)lsilsiB072
Lsi03G003310Bottle gourd (USVL1VR-Ls)lsilsiB125
Lsi03G003310Bottle gourd (USVL1VR-Ls)lsilsiB129
Lsi03G003310Cucumber (Gy14) v1cgylsiB065
Lsi03G003310Cucumber (Gy14) v1cgylsiB234
Lsi03G003310Cucumber (Gy14) v1cgylsiB216
Lsi03G003310Cucumber (Gy14) v1cgylsiB298
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB241
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB276
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB610
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB656
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB659
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB660
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB752
Lsi03G003310Cucurbita maxima (Rimu)cmalsiB801
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB229
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB265
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB598
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB645
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB648
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB649
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB746
Lsi03G003310Cucurbita moschata (Rifu)cmolsiB788
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB064
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB341
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB343
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB502
Lsi03G003310Cucurbita pepo (Zucchini)cpelsiB713
Lsi03G003310Wild cucumber (PI 183967)cpilsiB183
Lsi03G003310Wild cucumber (PI 183967)cpilsiB280
Lsi03G003310Wild cucumber (PI 183967)cpilsiB365
Lsi03G003310Wild cucumber (PI 183967)cpilsiB451
Lsi03G003310Cucumber (Chinese Long) v2culsiB048
Lsi03G003310Cucumber (Chinese Long) v2culsiB185
Lsi03G003310Cucumber (Chinese Long) v2culsiB282
Lsi03G003310Cucumber (Chinese Long) v2culsiB444
Lsi03G003310Melon (DHL92) v3.5.1lsimeB245
Lsi03G003310Melon (DHL92) v3.5.1lsimeB259
Lsi03G003310Melon (DHL92) v3.5.1lsimeB263
Lsi03G003310Watermelon (Charleston Gray)lsiwcgB220
Lsi03G003310Watermelon (Charleston Gray)lsiwcgB226
Lsi03G003310Watermelon (Charleston Gray)lsiwcgB240
Lsi03G003310Watermelon (Charleston Gray)lsiwcgB249
Lsi03G003310Watermelon (97103) v1lsiwmB243
Lsi03G003310Watermelon (97103) v1lsiwmB250
Lsi03G003310Watermelon (97103) v1lsiwmB266
Lsi03G003310Watermelon (97103) v1lsiwmB277
Lsi03G003310Cucumber (Gy14) v2cgyblsiB170
Lsi03G003310Cucumber (Gy14) v2cgyblsiB262
Lsi03G003310Cucumber (Gy14) v2cgyblsiB330
Lsi03G003310Melon (DHL92) v3.6.1lsimedB256
Lsi03G003310Melon (DHL92) v3.6.1lsimedB272
Lsi03G003310Melon (DHL92) v3.6.1lsimedB275
Lsi03G003310Silver-seed gourdcarlsiB079
Lsi03G003310Silver-seed gourdcarlsiB144
Lsi03G003310Silver-seed gourdcarlsiB236
Lsi03G003310Silver-seed gourdcarlsiB505
Lsi03G003310Silver-seed gourdcarlsiB603
Lsi03G003310Silver-seed gourdcarlsiB914
Lsi03G003310Cucumber (Chinese Long) v3cuclsiB051
Lsi03G003310Cucumber (Chinese Long) v3cuclsiB201
Lsi03G003310Cucumber (Chinese Long) v3cuclsiB303
Lsi03G003310Cucumber (Chinese Long) v3cuclsiB385
Lsi03G003310Cucumber (Chinese Long) v3cuclsiB473