Carg05993 (gene) Silver-seed gourd

Overview
NameCarg05993
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_026 : 598762 .. 600831 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGGAAGGAGGCAACATGTTTGGCATCGCCGTCGATGAAGATGCCAGCAGCTGCGAGTTTGGCGGCATCCTCATGGTCATATTCCAACAGCCTTCTTCTGGTCATGACGTTGAAGAGGAGGAGGAGGAGGAGGCGTAAAGGGCAGTGGCAATGAATTTTGAATTTTTGTTTCGGTGGAGAGGTGGTGGAGGTGTTCAGAAAGAGGGGGGCGAAATGGGTAGTAGTGGACGAGAAGGGATTTTACGGTTTATTTTGTGAATTAAACTTTTTAATGGCTGTGGGGATATCATAGGAACCGAAATCTGAGGAACAACGTAGCCTTTCCAGTTGCTGCTCATCCATCATCTCTACCATTCCATTCCCTTTTCTAATTCAGGACATTTCCTCTATAAATATTACCAATATATTAAAGATTGCTAAAAATATATATTTCTAAATAAAAAAAAATATAGTACCTCTTTTATTTTATTTCATCCCAAAAGTCCTTGTCATTTTATTTCCACGGCCTGGCCTGGTCAGTACCTAGCCGGGCTTTTTTTGTTCCAATGAATCGTAGATAAAATTATTTATTTTATTTGAAAACACAAAATGTTTTTGAAACAAAAAAAATCGAAACAACAAGAATCATAAGAAGATTTATTATTTGATTCCTATGATACAGAAAAAGATGATATAGAATCAAGGTGCCATTCCTTACTATTATTTTTATTTTAGTACTTTACTAGAATAGAATTAAAAAACTGGTTAATTTTTTAATTAAAATGAGTCCGTCTGCATGGTGCAGATGTGTGACACCTGAGTGAAGGAGAGATATGGTGTATTCAGATTTCGAATTTTGGTCATGTCTCTCATAATCGCATTTTTCTTGGTAGCGGACTTTGCGATTGTTCGACACTCACTCCCACTGAGTCAGTCAAGCCAATTCAAATTCGCGTCGCCTACAATCGAGCAACGTATTCAGAAAACACGTCTAGATAGTACAAGCAAGAAAGACAACATAGAGGCTTAGATAGTATATAACTTCGGGTAAGAAAATTTGACGATTAGTCGCATCACTATAGTACATTTTATGGCGATTCAAGTTTGACAGACCTAAATGTGATTTCGCCGAACAATCATACAAAATTAATGTAGGAGAGTTACAACTAGTCGCATGCATCTGTTATTTTGAGGCAATTCAAATATGACAGACTTAAACATGATTTTGCTCAATAGTAATACAATTTGGCAGTGACATGAGCATGCGACCATAGACAACACGTCTTAATTGCTTAACTATGTTCATGTTTGTAGTCTTTATAGGTGAGGTCGGGTTGAATCTTGTAAGCAATTGAGGTTGAATCTCGCATGTGTACACACATTTAAATAACAAAAAACACAAACTCCCACTTCGAACTTGTCCAGAATGTTGCCTATATTCATTATGGATTCATGATATTGTAGTTTGTGTGACCATACCCTACACACTCCTTGTCCTCATCACCACGTCCAGTGAATATCCCATCGCATTTTCTGATTCCCTCCCTCTCCTTTTCCAAACTTCAACTCCAAAAACTTGTCTCAGTGAGGTTAATAACTTGGATACACATGACACATACCTTACTCTGTTCATCATCTGCAATACCTTCCCTCTTCTTCAATGGTATCATCCACCATCTCCTTCCCTTGTACCCACTTATGTTTGTTTCCTGGAAAATCCTTTCTTTCTGGGTCATTGAGATCAAGCCAAAAATGTCTCGTTCCCCTGTTTCTTCAAGTGTTTGATTAGTTTCATATGCTGATTGTTTGGTAACTTTAAGGTTTTTGGGTGTTCCAGAGAGGAAGCAGGGATGGCGCCAAAAGCTGATATGTTCTTCTTCAACACAACATGTGTGTGCTGCATCATCGCTTTTCAAATCTCGAAGCAAAAGTGGGGTTAGAAAGTTGAGAACAGCAGGAAGTTGTGGCGGATCTGCAGAGATATGTGAAGGTCAACCGGCGCCATGGCTTTCCACATGGCCAACCAAACAGGTTAGAATTGAATTTAGAAGGCTTCCACGCCACTACACGCTTCTTAATGAATGA

mRNA sequence

ATGGCGGCGGAAGGAGGCAACATGTTTGGCATCGCCGTCGATGAAGATGCCAGCAGCTGCGAGTTTGGCGGCATCCTCATGGTCATATTCCAACAGCCTTCTTCTGGTCATGACGTTGAAGAGGAGGAGGAGGAGGAGGCGTTTTTGGGTGTTCCAGAGAGGAAGCAGGGATGGCGCCAAAAGCTGATATGTTCTTCTTCAACACAACATGTGTGTGCTGCATCATCGCTTTTCAAATCTCGAAGCAAAAGTGGGGTTAGAAAGTTGAGAACAGCAGGAAGTTGTGGCGGATCTGCAGAGATATGTGAAGGTCAACCGGCGCCATGGCTTTCCACATGGCCAACCAAACAGGTTAGAATTGAATTTAGAAGGCTTCCACGCCACTACACGCTTCTTAATGAATGA

Coding sequence (CDS)

ATGGCGGCGGAAGGAGGCAACATGTTTGGCATCGCCGTCGATGAAGATGCCAGCAGCTGCGAGTTTGGCGGCATCCTCATGGTCATATTCCAACAGCCTTCTTCTGGTCATGACGTTGAAGAGGAGGAGGAGGAGGAGGCGTTTTTGGGTGTTCCAGAGAGGAAGCAGGGATGGCGCCAAAAGCTGATATGTTCTTCTTCAACACAACATGTGTGTGCTGCATCATCGCTTTTCAAATCTCGAAGCAAAAGTGGGGTTAGAAAGTTGAGAACAGCAGGAAGTTGTGGCGGATCTGCAGAGATATGTGAAGGTCAACCGGCGCCATGGCTTTCCACATGGCCAACCAAACAGGTTAGAATTGAATTTAGAAGGCTTCCACGCCACTACACGCTTCTTAATGAATGA

Protein sequence

MAAEGGNMFGIAVDEDASSCEFGGILMVIFQQPSSGHDVEEEEEEEAFLGVPERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLSTWPTKQVRIEFRRLPRHYTLLNE
Homology
[Close]
BLAST of Carg05993 vs. NCBI nr
Match: XP_022961258.1 (probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Cucurbita moschata])

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 53  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST 112
           ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST
Sbjct: 19  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST 78

Query: 113 WPTKQV 119
           WPTKQ+
Sbjct: 79  WPTKQL 84

[Close]
BLAST of Carg05993 vs. NCBI nr
Match: XP_022990736.1 (probable sugar phosphate/phosphate translocator At3g11320 isoform X2 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 53  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST 112
           ERKQGWRQKLICSSSTQHVCAASSLFKS SKSGVRKL TAGSCGGSAEICEGQPAPWLST
Sbjct: 19  ERKQGWRQKLICSSSTQHVCAASSLFKSGSKSGVRKLSTAGSCGGSAEICEGQPAPWLST 78

Query: 113 WPTKQV 119
           WPTKQ+
Sbjct: 79  WPTKQL 84

[Close]
BLAST of Carg05993 vs. NCBI nr
Match: XP_022990735.1 (probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 53  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST 112
           ERKQGWRQKLICSSSTQHVCAASSLFKS SKSGVRKL TAGSCGGSAEICEGQPAPWLST
Sbjct: 31  ERKQGWRQKLICSSSTQHVCAASSLFKSGSKSGVRKLSTAGSCGGSAEICEGQPAPWLST 90

Query: 113 WPTKQV 119
           WPTKQ+
Sbjct: 91  WPTKQL 96

[Close]
BLAST of Carg05993 vs. NCBI nr
Match: XP_023512012.1 (probable sugar phosphate/phosphate translocator At3g11320 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 6.3e-28
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 53  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST 112
           ERKQGWRQKLICSSSTQHV AASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPW+ST
Sbjct: 19  ERKQGWRQKLICSSSTQHVFAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWVST 78

Query: 113 WPTKQV 119
           WPTKQ+
Sbjct: 79  WPTKQL 84

[Close]
BLAST of Carg05993 vs. NCBI nr
Match: XP_023512004.1 (probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 6.3e-28
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 53  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWLST 112
           ERKQGWRQKLICSSSTQHV AASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPW+ST
Sbjct: 31  ERKQGWRQKLICSSSTQHVFAASSLFKSRSKSGVRKLRTAGSCGGSAEICEGQPAPWVST 90

Query: 113 WPTKQV 119
           WPTKQ+
Sbjct: 91  WPTKQL 96

[Close]
BLAST of Carg05993 vs. TrEMBL
Match: tr|A0A1S4DTT2|A0A1S4DTT2_CUCME (uncharacterized protein LOC107990500 OS=Cucumis melo OX=3656 GN=LOC107990500 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 53  ERKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLR----TAGSCGGSAEICEGQPAP 112
           ER+Q WR+K+IC  S QHV   S L   +S  G RK R    TAGS GGSAEI +GQP P
Sbjct: 18  EREQRWRKKVIC-CSRQHVWDESLL---QSNGGFRKFRASNSTAGSYGGSAEISKGQPLP 77

Query: 113 WLSTWPTKQVRIEFRRL 126
           W+STWP KQ+ + F ++
Sbjct: 78  WISTWPNKQMLMPFSKV 90

[Close]
BLAST of Carg05993 vs. TrEMBL
Match: tr|A0A0A0K8G8|A0A0A0K8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009470 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 54  RKQGWRQKLICSSSTQHVCAASSLFKSRSKSGVRKLR----TAGSCGGSAEICEGQPAPW 113
           R+Q WR+K+IC  S QHV   S L   +S SG RK+R    TAGS GGSAEI +GQP  W
Sbjct: 37  REQRWRKKIIC-CSRQHVWDKSLL---QSNSGFRKIRASNSTAGSYGGSAEISKGQPLAW 96

Query: 114 LSTWPTKQVR 120
           +STWP KQ +
Sbjct: 97  ISTWPNKQTQ 102

The following BLAST results are available for this feature:
BLAST of Carg05993 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961258.11.5e-2998.48probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Cucurbita ... [more]
XP_022990736.14.8e-2895.45probable sugar phosphate/phosphate translocator At3g11320 isoform X2 [Cucurbita ... [more]
XP_022990735.14.8e-2895.45probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Cucurbita ... [more]
XP_023512012.16.3e-2895.45probable sugar phosphate/phosphate translocator At3g11320 isoform X2 [Cucurbita ... [more]
XP_023512004.16.3e-2895.45probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Cucurbita ... [more]
BLAST of Carg05993 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg05993 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg05993 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DTT2|A0A1S4DTT2_CUCME5.1e-1053.25uncharacterized protein LOC107990500 OS=Cucumis melo OX=3656 GN=LOC107990500 PE=... [more]
tr|A0A0A0K8G8|A0A0A0K8G8_CUCSA1.3e-0855.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05993-RACarg05993-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05993Lsi03G003310Bottle gourd (USVL1VR-Ls)carlsiB017
Carg05993CsGy6G001530Cucumber (Gy14) v2carcgybB0023
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05993Watermelon (97103) v2carwmbB0014
Carg05993Watermelon (97103) v2carwmbB0015
Carg05993Watermelon (97103) v2carwmbB0021
Carg05993Watermelon (97103) v2carwmbB0022
Carg05993Wax gourdcarwgoB0017
Carg05993Wax gourdcarwgoB0022
Carg05993Silver-seed gourdcarcarB016
Carg05993Silver-seed gourdcarcarB020
Carg05993Silver-seed gourdcarcarB022
Carg05993Silver-seed gourdcarcarB023
Carg05993Silver-seed gourdcarcarB025
Carg05993Silver-seed gourdcarcarB026
Carg05993Cucumber (Gy14) v2carcgybB0020
Carg05993Cucumber (Gy14) v2carcgybB0018
Carg05993Cucumber (Gy14) v1carcgyB0015
Carg05993Cucumber (Gy14) v1carcgyB0019
Carg05993Cucumber (Gy14) v1carcgyB0022
Carg05993Cucurbita maxima (Rimu)carcmaB0028
Carg05993Cucurbita maxima (Rimu)carcmaB0030
Carg05993Cucurbita maxima (Rimu)carcmaB0031
Carg05993Cucurbita maxima (Rimu)carcmaB0033
Carg05993Cucurbita maxima (Rimu)carcmaB0034
Carg05993Cucurbita maxima (Rimu)carcmaB0035
Carg05993Cucurbita moschata (Rifu)carcmoB0029
Carg05993Cucurbita moschata (Rifu)carcmoB0031
Carg05993Cucurbita moschata (Rifu)carcmoB0033
Carg05993Cucurbita moschata (Rifu)carcmoB0034
Carg05993Cucurbita pepo (Zucchini)carcpeB0031
Carg05993Cucurbita pepo (Zucchini)carcpeB0034
Carg05993Cucurbita pepo (Zucchini)carcpeB0035
Carg05993Cucurbita pepo (Zucchini)carcpeB0036
Carg05993Wild cucumber (PI 183967)carcpiB0019
Carg05993Wild cucumber (PI 183967)carcpiB0021
Carg05993Wild cucumber (PI 183967)carcpiB0024
Carg05993Cucumber (Chinese Long) v2carcuB0019
Carg05993Cucumber (Chinese Long) v2carcuB0023
Carg05993Cucumber (Chinese Long) v3carcucB0019
Carg05993Cucumber (Chinese Long) v3carcucB0021
Carg05993Cucumber (Chinese Long) v3carcucB0024
Carg05993Bottle gourd (USVL1VR-Ls)carlsiB016
Carg05993Bottle gourd (USVL1VR-Ls)carlsiB020
Carg05993Melon (DHL92) v3.5.1carmeB0023
Carg05993Melon (DHL92) v3.5.1carmeB0024
Carg05993Melon (DHL92) v3.6.1carmedB0024
Carg05993Melon (DHL92) v3.6.1carmedB0025
Carg05993Watermelon (Charleston Gray)carwcgB0018
Carg05993Watermelon (Charleston Gray)carwcgB0019
Carg05993Watermelon (Charleston Gray)carwcgB0025
Carg05993Watermelon (97103) v1carwmB0017
Carg05993Watermelon (97103) v1carwmB0020
Carg05993Watermelon (97103) v1carwmB0024