Lsi03G001790 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G001790
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 2354234 .. 2354557 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGCCACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCAAATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA

mRNA sequence

ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGCCACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCAAATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA

Coding sequence (CDS)

ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGCCACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCAAATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA

Protein sequence

MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKPNATYGEVTAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPACK
BLAST of Lsi03G001790 vs. TrEMBL
Match: A0A0A0KUG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1

Query: 1   MGGRCSFWGVA--VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLM 60
           MGGR SF G+   VV +M  TIL SS+ CRGS+L K NAT G V T EL+I  DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
           F+ + A TG T +PN+ +C  G GN    C G A+ T+ CNAY G  AC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

BLAST of Lsi03G001790 vs. TrEMBL
Match: A0A0A0KVT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMF 60
           MG R SF G+  VV +ML TIL SSH CRGSVL K NATY  V T EL+IYGDI R+LM 
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  EDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
             SKAKTGKT   NV +C  G GN    C G+      C+AY G  AC
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

BLAST of Lsi03G001790 vs. TrEMBL
Match: A0A0A0KSJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-20
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 1

Query: 10  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKT 69
           + VV MML TIL SSH CR SVL K NATYG V TAELLIY D+TRYLM++ + +KTGKT
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  DNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
            +  V  CD G GN    C G++   K CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

BLAST of Lsi03G001790 vs. NCBI nr
Match: gi|700197342|gb|KGN52519.1| (hypothetical protein Csa_5G640530 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1

Query: 1   MGGRCSFWGVA--VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLM 60
           MGGR SF G+   VV +M  TIL SS+ CRGS+L K NAT G V T EL+I  DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
           F+ + A TG T +PN+ +C  G GN    C G A+ T+ CNAY G  AC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

BLAST of Lsi03G001790 vs. NCBI nr
Match: gi|700197340|gb|KGN52517.1| (hypothetical protein Csa_5G640510 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMF 60
           MG R SF G+  VV +ML TIL SSH CRGSVL K NATY  V T EL+IYGDI R+LM 
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  EDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
             SKAKTGKT   NV +C  G GN    C G+      C+AY G  AC
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

BLAST of Lsi03G001790 vs. NCBI nr
Match: gi|700197341|gb|KGN52518.1| (hypothetical protein Csa_5G640520 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 1

Query: 10  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKT 69
           + VV MML TIL SSH CR SVL K NATYG V TAELLIY D+TRYLM++ + +KTGKT
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  DNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
            +  V  CD G GN    C G++   K CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUG7_CUCSA1.8e-2053.21Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640530 PE=4 SV=1[more]
A0A0A0KVT8_CUCSA2.3e-2056.48Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640510 PE=4 SV=1[more]
A0A0A0KSJ4_CUCSA4.0e-2056.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700197342|gb|KGN52519.1|2.6e-2053.21hypothetical protein Csa_5G640530 [Cucumis sativus][more]
gi|700197340|gb|KGN52517.1|3.4e-2056.48hypothetical protein Csa_5G640510 [Cucumis sativus][more]
gi|700197341|gb|KGN52518.1|5.8e-2056.12hypothetical protein Csa_5G640520 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001790.1Lsi03G001790.1mRNA


The following gene(s) are paralogous to this gene:

None