Csa5G640510 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G640510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 26665300 .. 26666019 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGCAAAGAGTGAGAGAGATGAACCACTGCCTCCATTTTCAAGCTTCTTCATTTCTATAAGTTCTCTCTTCCCCCAACAAAATATCCCATACCCCGACGAACAAGTCGAGAAACCGAGCACCAAACATGGGTAGTCGTTCTTCATTTAGTGGATTAACAATGGTGGTGGTGGTGATGTTGATAACCATCCTCTTTTCCAGCCACAGCTGCAGAGGTTCGGTTCTGATCAAGGCGAATGCCACGTACGACGTCGTGATGACAGAAGAGTTGATGATCTACGGTGATATAAATCGACATCTCATGCCCAGTGGTAGCAAAGCAAAGACAGGTAAGACACATGAGCGAAACGTCGTAGCTTGCGGTAATGGCGCCGGAAATACCTATGCTGTCTGTGGTGGAAGCATCAGCAATGAAAATAAATGCGATGCATACAAAGGCCCCAATGCTTGCTAATAATCCCTTCAATGATTCCATACCAATACTAATATTAATTGTTATGGCATCCCCTCTTCTTTTTACTTTGAATTTTTATTTCTCTTTACCGTGGAGTTGTTTGTTGCTTCGATTAATTATGTCTTTTGGTGATGGTTGTTTGTTTGTGTGTGTGAAATAAGAACCTAATGAAACGGCTCATCTTCTTCTTCAAATTTGTAACGACGTAATATGAATATTTCTTAACTATAAGTGTTTATGTATACAAAGAACAAGAAATTTCATTA

mRNA sequence

ATGGGTAGTCGTTCTTCATTTAGTGGATTAACAATGGTGGTGGTGGTGATGTTGATAACCATCCTCTTTTCCAGCCACAGCTGCAGAGGTTCGGTTCTGATCAAGGCGAATGCCACGTACGACGTCGTGATGACAGAAGAGTTGATGATCTACGGTGATATAAATCGACATCTCATGCCCAGTGGTAGCAAAGCAAAGACAGGTAAGACACATGAGCGAAACGTCGTAGCTTGCGGTAATGGCGCCGGAAATACCTATGCTGTCTGTGGTGGAAGCATCAGCAATGAAAATAAATGCGATGCATACAAAGGCCCCAATGCTTGCTAA

Coding sequence (CDS)

ATGGGTAGTCGTTCTTCATTTAGTGGATTAACAATGGTGGTGGTGGTGATGTTGATAACCATCCTCTTTTCCAGCCACAGCTGCAGAGGTTCGGTTCTGATCAAGGCGAATGCCACGTACGACGTCGTGATGACAGAAGAGTTGATGATCTACGGTGATATAAATCGACATCTCATGCCCAGTGGTAGCAAAGCAAAGACAGGTAAGACACATGAGCGAAACGTCGTAGCTTGCGGTAATGGCGCCGGAAATACCTATGCTGTCTGTGGTGGAAGCATCAGCAATGAAAATAAATGCGATGCATACAAAGGCCCCAATGCTTGCTAA

Protein sequence

MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMPSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC*
Homology
[Close]
BLAST of Csa5G640510 vs. TrEMBL
Match: A0A0A0KVT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60
           MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 109
           SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

[Close]
BLAST of Csa5G640510 vs. TrEMBL
Match: A0A0A0KUG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-29
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 1   MGSRSSFSGLTMVVVVML-ITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLM 60
           MG RSSF GLTMVVVV++ ITIL SS+SCRGS+L+KANAT   VMT EL+I  DI R+L+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  PSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 109
             G+ A TG T + N+V CGNGAGNT++ CGG+ +N  +C+AY+GPNAC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]
BLAST of Csa5G640510 vs. TrEMBL
Match: A0A0A0KSJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-29
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1 

Query: 1   MGSRSS----FSGLTMVVVVM-LITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDIN 60
           MGSRSS    FSGLTMVVVVM LITIL+SSH+CR SVLIKANATY  VMT EL+IY D+ 
Sbjct: 1   MGSRSSSSSSFSGLTMVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVT 60

Query: 61  RHLMPSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 109
           R+LM   + +KTGKT ++ VV C NG GN+++ CGGS SN+ +C+AY  P  C
Sbjct: 61  RYLMYDHADSKTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]
BLAST of Csa5G640510 vs. NCBI nr
Match: gi|700197340|gb|KGN52517.1| (hypothetical protein Csa_5G640510 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 5.6e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60
           MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 109
           SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

[Close]
BLAST of Csa5G640510 vs. NCBI nr
Match: gi|700197342|gb|KGN52519.1| (hypothetical protein Csa_5G640530 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-29
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 1   MGSRSSFSGLTMVVVVML-ITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLM 60
           MG RSSF GLTMVVVV++ ITIL SS+SCRGS+L+KANAT   VMT EL+I  DI R+L+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  PSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 109
             G+ A TG T + N+V CGNGAGNT++ CGG+ +N  +C+AY+GPNAC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]
BLAST of Csa5G640510 vs. NCBI nr
Match: gi|700197341|gb|KGN52518.1| (hypothetical protein Csa_5G640520 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-29
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1 

Query: 1   MGSRSS----FSGLTMVVVVM-LITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDIN 60
           MGSRSS    FSGLTMVVVVM LITIL+SSH+CR SVLIKANATY  VMT EL+IY D+ 
Sbjct: 1   MGSRSSSSSSFSGLTMVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVT 60

Query: 61  RHLMPSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 109
           R+LM   + +KTGKT ++ VV C NG GN+++ CGGS SN+ +C+AY  P  C
Sbjct: 61  RYLMYDHADSKTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

The following BLAST results are available for this feature:
BLAST of Csa5G640510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVT8_CUCSA3.9e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640510 PE=4 SV=1[more]
A0A0A0KUG7_CUCSA1.7e-2962.39Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640530 PE=4 SV=1[more]
A0A0A0KSJ4_CUCSA2.8e-2962.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G640520 PE=4 SV=1[more]
BLAST of Csa5G640510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197340|gb|KGN52517.1|5.6e-55100.00hypothetical protein Csa_5G640510 [Cucumis sativus][more]
gi|700197342|gb|KGN52519.1|2.4e-2962.39hypothetical protein Csa_5G640530 [Cucumis sativus][more]
gi|700197341|gb|KGN52518.1|4.0e-2962.83hypothetical protein Csa_5G640520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU145386cucumber EST collection version 3.0transcribed_cluster
CU173111cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G640510.1Csa5G640510.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145386CU145386transcribed_cluster
CU173111CU173111transcribed_cluster