Lsi03G001310 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G001310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUbiquitin carboxyl-terminal hydrolase family protein
Locationchr03 : 1816765 .. 1817946 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGAAAATCTATGTTCTTACGCCTAAATCCATATCTCAACTTTAACCCAATTTATAAGGAGTCGGGTTTTCTATGGGTCTTGATGAGGCACAAATCTATCGGTGGAATGAGACCGAAGAGAAAAATATATTATAGAGTTGGTGAACTGGACAAAGTTATGGAGTTGCAGAAAAAGCCATCCCTTATACTAAAGCTTATAAACATTATCCAATCTCAAAAGCACAAATTTATATTCTTGAGGGACCTGGAGAAAGAAGTAGGATTTGTCCAAAAATGGAACTTCATGGCTGTCATTGAGAAGTACTCTTCAATCTTTTATGTCGGTTCTGGAAGTAGTAGAATGCCTCCTTATGTTAGGCTCTCCAATAAAGCTGAATGGATTGCTAGTGAAGAAGATAAAGTAAAGAGTGCAATGGAACCAATCTTAGTAAAGAATTTGAGGAAGCTGTTGATGCTGTCAGTTGATTGTCGAATACCACTCGAAAATATAGAATTCATTGCATCTGAATTGGGTTTGCCTTATGACTTCAGAACTTCATTGATTCCTGAGTACCCTGAATTCTTTTCAGTGAAGGAAGTTGATGGGAAAGCCCACCTACATTTGGAAAATTGGGATTCTTCACTTGCAATCAGTGCTCGGGAGGATAGATTTGCTAGAGCTAGAGATTTATCTTCTTGTGTATATGGAAAAAGAGTTAGAATCTCAAAAGATGGCAACTTTTCTGGTCCTTTTGCATTCAAGATATGTTTTCCTCCAGGCTTTAGGCCAAACATGAGTTACCTTGAGCATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCCCCATACTTGAACGCGAGGAGATTTGATGCAGCTGATCCTAAGGCGAGAAAGAGAGTGGTTGCAGTTCTTCATGAGTTTCTAAGTTTGACATTGGAAAAAAGGATGACATCAACACAATTGGATGCATTTCATAAGGAGTTTCTTCTACCAACTAAATTATTGCTTTGCTTGTTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTATTTCTGAAAGAAGCCTATGAAGGGTCAACTTTGATAGATAAATGTCCCTTGCTGTTGCACTCTGATAGATTCCTTTCACTATGTGGTAGAAGGGACATGAGTTGCAATTCACACCAAGTTAGTTTCTAG

mRNA sequence

ATGAATGGAAAATCTATGTTCTTACGCCTAAATCCATATCTCAACTTTAACCCAATTTATAAGGAGTCGGGTTTTCTATGGGTCTTGATGAGGCACAAATCTATCGGTGGAATGAGACCGAAGAGAAAAATATATTATAGAGTTGGTGAACTGGACAAAGTTATGGAGTTGCAGAAAAAGCCATCCCTTATACTAAAGCTTATAAACATTATCCAATCTCAAAAGCACAAATTTATATTCTTGAGGGACCTGGAGAAAGAAGTAGGATTTGTCCAAAAATGGAACTTCATGGCTGTCATTGAGAAGTACTCTTCAATCTTTTATGTCGGTTCTGGAAGTAGTAGAATGCCTCCTTATGTTAGGCTCTCCAATAAAGCTGAATGGATTGCTAGTGAAGAAGATAAAGTAAAGAGTGCAATGGAACCAATCTTAGTAAAGAATTTGAGGAAGCTGTTGATGCTGTCAGTTGATTGTCGAATACCACTCGAAAATATAGAATTCATTGCATCTGAATTGGGTTTGCCTTATGACTTCAGAACTTCATTGATTCCTGAGTACCCTGAATTCTTTTCAGTGAAGGAAGTTGATGGGAAAGCCCACCTACATTTGGAAAATTGGGATTCTTCACTTGCAATCAGTGCTCGGGAGGATAGATTTGCTAGAGCTAGAGATTTATCTTCTTGTGTATATGGAAAAAGAGTTAGAATCTCAAAAGATGGCAACTTTTCTGGTCCTTTTGCATTCAAGATATGTTTTCCTCCAGGCTTTAGGCCAAACATGAGTTACCTTGAGCATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCCCCATACTTGAACGCGAGGAGATTTGATGCAGCTGATCCTAAGGCGAGAAAGAGAGTGGTTGCAGTTCTTCATGAGTTTCTAAGTTTGACATTGGAAAAAAGGATGACATCAACACAATTGGATGCATTTCATAAGGAGTTTCTTCTACCAACTAAATTATTGCTTTGCTTGTTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTATTTCTGAAAGAAGCCTATGAAGGGTCAACTTTGATAGATAAATGTCCCTTGCTGTTGCACTCTGATAGATTCCTTTCACTATGTGGTAGAAGGGACATGAGTTGCAATTCACACCAAGTTAGTTTCTAG

Coding sequence (CDS)

ATGAATGGAAAATCTATGTTCTTACGCCTAAATCCATATCTCAACTTTAACCCAATTTATAAGGAGTCGGGTTTTCTATGGGTCTTGATGAGGCACAAATCTATCGGTGGAATGAGACCGAAGAGAAAAATATATTATAGAGTTGGTGAACTGGACAAAGTTATGGAGTTGCAGAAAAAGCCATCCCTTATACTAAAGCTTATAAACATTATCCAATCTCAAAAGCACAAATTTATATTCTTGAGGGACCTGGAGAAAGAAGTAGGATTTGTCCAAAAATGGAACTTCATGGCTGTCATTGAGAAGTACTCTTCAATCTTTTATGTCGGTTCTGGAAGTAGTAGAATGCCTCCTTATGTTAGGCTCTCCAATAAAGCTGAATGGATTGCTAGTGAAGAAGATAAAGTAAAGAGTGCAATGGAACCAATCTTAGTAAAGAATTTGAGGAAGCTGTTGATGCTGTCAGTTGATTGTCGAATACCACTCGAAAATATAGAATTCATTGCATCTGAATTGGGTTTGCCTTATGACTTCAGAACTTCATTGATTCCTGAGTACCCTGAATTCTTTTCAGTGAAGGAAGTTGATGGGAAAGCCCACCTACATTTGGAAAATTGGGATTCTTCACTTGCAATCAGTGCTCGGGAGGATAGATTTGCTAGAGCTAGAGATTTATCTTCTTGTGTATATGGAAAAAGAGTTAGAATCTCAAAAGATGGCAACTTTTCTGGTCCTTTTGCATTCAAGATATGTTTTCCTCCAGGCTTTAGGCCAAACATGAGTTACCTTGAGCATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCCCCATACTTGAACGCGAGGAGATTTGATGCAGCTGATCCTAAGGCGAGAAAGAGAGTGGTTGCAGTTCTTCATGAGTTTCTAAGTTTGACATTGGAAAAAAGGATGACATCAACACAATTGGATGCATTTCATAAGGAGTTTCTTCTACCAACTAAATTATTGCTTTGCTTGTTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTATTTCTGAAAGAAGCCTATGAAGGGTCAACTTTGATAGATAAATGTCCCTTGCTGTTGCACTCTGATAGATTCCTTTCACTATGTGGTAGAAGGGACATGAGTTGCAATTCACACCAAGTTAGTTTCTAG

Protein sequence

MNGKSMFLRLNPYLNFNPIYKESGFLWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDMSCNSHQVSF
Homology
[Close]
BLAST of Lsi03G001310 vs. Swiss-Prot
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-32
Identity = 125/394 (31.73%), Postives = 200/394 (50.76%), Query Frame = 1 

Query: 6   MFLRLNPYLNFNPIYKESGFLW-----VLMRHKSIGGMRPKRKIYYRVGELDKVMELQKK 65
           +FLR N +   NP  K +  +      +L++  S     PK++   R    D  ME++KK
Sbjct: 3   LFLR-NAFKTLNPKRKLATTILPSINLILVKPFSQSTTIPKKQDRVRDHGYDNYMEVEKK 62

Query: 66  PSLILKLINIIQSQKHKFI---FLRDLEKEVGFVQKWNFM-AVIEKYSSIFYVGSGSSRM 125
              ++K  ++I SQ +  I    L  L + +G   K +   A + K+  +F +     + 
Sbjct: 63  IRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIYEHPVQR 122

Query: 126 PPYVRLSNKA-EWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELGLP 185
             Y RL+ KA + I  E + V   + P  V  LRKL+M+S   RI LE++    +E GLP
Sbjct: 123 ILYCRLTRKALDQIRHEHEAVLDQI-PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLP 182

Query: 186 YDFRTSLIPEYPEFFSVKEVDGKA----HLHLENWDSSLAISAREDRFARARDLSSCVYG 245
            DF  S+I ++P+FF +  +DG+     ++ +   D +L+I A E    R R++    Y 
Sbjct: 183 EDFEYSVILKHPQFFRL--IDGEETRDKYIEIVEKDPNLSICAIE----RVREIE---YR 242

Query: 246 KRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKA 305
            +   ++D  FS    F + FPPGF+    +   + +WQ++ + SPY +   +D    +A
Sbjct: 243 TKGIDAEDVRFS----FVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEA 302

Query: 306 R----KRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQGIFYIT---N 365
           +    KR VA +HE LSLT+EK++T  ++  F     LP KL   LL+HQGIFYI+   N
Sbjct: 303 QNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGN 362

Query: 366 KGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSL 379
            G   TVFL+E Y+   L++   + L   R   L
Sbjct: 363 YGKLHTVFLREGYKRGELVEPNDVYLARRRLAEL 381

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BLAST of Lsi03G001310 vs. TrEMBL
Match: A0A0A0LVT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G164710 PE=4 SV=1)

HSP 1 Score: 720.7 bits (1859), Expect = 9.7e-205
Identity = 359/399 (89.97%), Postives = 374/399 (93.73%), Query Frame = 1 

Query: 1   MNGKSMFLRLNPYLNFNPI-------YKESGFLWVLMRHKSIGGMRPKRKIYYRVGELDK 60
           MNGKSMFLRLN Y N  PI       +K+S FLWVLMRHKS GGMRPKRKIYYRV ELDK
Sbjct: 1   MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDK 60

Query: 61  VMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS 120
           VM+LQKKPSLILKLINIIQSQK+KFI LRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS
Sbjct: 61  VMDLQKKPSLILKLINIIQSQKNKFILLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS 120

Query: 121 SRMPPYVRLSNKAEWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELG 180
           SR+PPYVRLSNKAE IASEEDKVKSAMEPILVKNLRKLLMLSVDCR+PLENIEFIASELG
Sbjct: 121 SRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELG 180

Query: 181 LPYDFRTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREDRFARARDLSSCVYGKR 240
           LP DF+TSLIP+YPEFFSVKEVDGKAHLHLENWDSSLAI AREDRFA+ARDLSSC YGKR
Sbjct: 181 LPCDFKTSLIPKYPEFFSVKEVDGKAHLHLENWDSSLAICAREDRFAKARDLSSCGYGKR 240

Query: 241 VRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARK 300
           VRISKDGNFSGPFAFK+CFP GFRPN SYLEHLERWQKMDFPSPYLNARRFD ADPK RK
Sbjct: 241 VRISKDGNFSGPFAFKMCFPSGFRPNTSYLEHLERWQKMDFPSPYLNARRFDVADPKTRK 300

Query: 301 RVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQGIFYITNKGARSTVFL 360
           RVVAVLHEFLSLT+EKRMTSTQLDAFH+EFLLP+KLLLCL+KHQGIFYITNKGARSTVFL
Sbjct: 301 RVVAVLHEFLSLTMEKRMTSTQLDAFHREFLLPSKLLLCLVKHQGIFYITNKGARSTVFL 360

Query: 361 KEAYEGSTLIDKCPLLLHSDRFLSLCGRRDMSCNSHQVS 393
           KE YEGS L+DKCPLLLHSDRFLSLCGRRDMSCNSHQVS
Sbjct: 361 KEGYEGSILVDKCPLLLHSDRFLSLCGRRDMSCNSHQVS 399

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BLAST of Lsi03G001310 vs. TrEMBL
Match: M5WG21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007448mg PE=4 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 2.9e-148
Identity = 262/364 (71.98%), Postives = 307/364 (84.34%), Query Frame = 1 

Query: 26  LWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE 85
           +WV ++HKS GG RPKRK+Y+RV ELDKVM+ QKKP+LIL+L +IIQSQKH+ + LRDLE
Sbjct: 1   MWVPVKHKSSGGRRPKRKVYHRVHELDKVMDFQKKPALILQLKSIIQSQKHQSLLLRDLE 60

Query: 86  KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILV 145
           KEVGFVQKWNFMA IEKY SIFYVG G+ R PP+V L+ KA+ +A EE + K  MEPILV
Sbjct: 61  KEVGFVQKWNFMAAIEKYPSIFYVGGGN-RTPPFVTLAEKAKKVAREEAEAKDLMEPILV 120

Query: 146 KNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLEN 205
           KNLRKLLMLSVDCR+PLENIEFI SELGLP DF+ SL+P+YPE FSVKEV+GK HLHLEN
Sbjct: 121 KNLRKLLMLSVDCRVPLENIEFIESELGLPNDFKKSLLPKYPEIFSVKEVNGKLHLHLEN 180

Query: 206 WDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEH 265
           WDSS+A++ARE++       +    G +VRISKDGNF GP AF++ FP GFRPN SYLE 
Sbjct: 181 WDSSIAVTAREEQLGGEGISAPSGLGNKVRISKDGNFLGPHAFRMSFPAGFRPNTSYLEQ 240

Query: 266 LERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLL 325
           LERWQKMDFPSPYLNARRFD ADPK RKRVVAVLHE LSLT++KRMTS QLDAFH E+ L
Sbjct: 241 LERWQKMDFPSPYLNARRFDIADPKVRKRVVAVLHELLSLTMQKRMTSAQLDAFHSEYFL 300

Query: 326 PTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDM- 385
           P+KLLLCL+KH GIFYITNKGARSTVFLKEAY+G  LI+KCPLLL +D+F++L GRR++ 
Sbjct: 301 PSKLLLCLIKHPGIFYITNKGARSTVFLKEAYDGLNLINKCPLLLFNDKFVALSGRREIN 360

Query: 386 SCNS 389
           SC +
Sbjct: 361 SCKT 363

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BLAST of Lsi03G001310 vs. TrEMBL
Match: V4T294_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020719mg PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.9e-147
Identity = 262/368 (71.20%), Postives = 311/368 (84.51%), Query Frame = 1 

Query: 26  LWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE 85
           +WV M+ KS GG R K+KIY RV ELD+VMELQKKPSLIL+L +IIQSQK K + LRDLE
Sbjct: 1   MWVPMKQKSTGGWRSKKKIYRRVHELDRVMELQKKPSLILQLKSIIQSQKQKCL-LRDLE 60

Query: 86  KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILV 145
           K+VGFV KWNFMAVIEKY SIF+VG GS+R PP+V L+ KAE IA EE+  +  MEPILV
Sbjct: 61  KQVGFVHKWNFMAVIEKYPSIFHVGGGSNRKPPFVTLTQKAEKIADEEEVARELMEPILV 120

Query: 146 KNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLEN 205
           KNLRKLLM+SVDCR+PLE IEFI SELGLP DF+ + +P+Y +FF+VK+ +GK +L+L+N
Sbjct: 121 KNLRKLLMMSVDCRVPLEKIEFIESELGLPQDFKKAFLPKYDDFFTVKDTNGKPYLYLQN 180

Query: 206 WDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEH 265
           WD+SLA++ARE+R AR   L S    KRVRI+KDGN+SGP AFKICFP GFRPN SYLE 
Sbjct: 181 WDASLAVTAREERLAREGVLDSAGAQKRVRITKDGNYSGPNAFKICFPAGFRPNTSYLEQ 240

Query: 266 LERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLL 325
           LERWQ+M+FPSPYLNARRF+ ADPKARKRVVAVLHE LSLT+EKRMTS QLDAFH E++L
Sbjct: 241 LERWQRMEFPSPYLNARRFELADPKARKRVVAVLHELLSLTMEKRMTSAQLDAFHSEYML 300

Query: 326 PTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDM- 385
           P KLLLCL+KH GIFYITNKGARSTV LKEAY+GS LIDKCPLLL++D+F++L GRR++ 
Sbjct: 301 PHKLLLCLIKHHGIFYITNKGARSTVLLKEAYDGSNLIDKCPLLLYNDKFVALSGRREIN 360

Query: 386 SCNSHQVS 393
           SCN   +S
Sbjct: 361 SCNGKSLS 367

[Close]
BLAST of Lsi03G001310 vs. TrEMBL
Match: A0A067JMI5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22647 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 9.2e-147
Identity = 261/363 (71.90%), Postives = 311/363 (85.67%), Query Frame = 1 

Query: 26  LWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE 85
           +WV ++ KS GG RPK+KIY+RV ELD+VM+LQKKPSLIL L +IIQSQKH+ + LRDLE
Sbjct: 1   MWVSVKEKSSGGRRPKKKIYHRVHELDRVMDLQKKPSLILHLKSIIQSQKHQCLLLRDLE 60

Query: 86  KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILV 145
           K+VGFVQKWNFMAV+EKY SIF VG GS R PP+V L+ KA  IA++E + + +MEPILV
Sbjct: 61  KQVGFVQKWNFMAVLEKYPSIFRVGGGSDRTPPFVTLTEKAIKIANQEHEARESMEPILV 120

Query: 146 KNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLEN 205
           +NLRKLLM+SVDCR+PLE IEFI +ELGLP  F+ SLIP+YPE+FSVK V+GKA+LHLEN
Sbjct: 121 RNLRKLLMMSVDCRVPLEKIEFIGNELGLPQGFKNSLIPKYPEYFSVKNVNGKAYLHLEN 180

Query: 206 WDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEH 265
           WDSSLAI+ARE+R +     +S    K+VRISKDGNF GPFAF++ FP GFRPN SYLE 
Sbjct: 181 WDSSLAITAREERLSLEGVSASNPPKKKVRISKDGNFLGPFAFRMRFPAGFRPNASYLEE 240

Query: 266 LERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLL 325
           LERWQ+++FPSPYLNARRFDAADPKARKRVVAVLHE LSLT+EKRMTS QLDAFH E LL
Sbjct: 241 LERWQRLEFPSPYLNARRFDAADPKARKRVVAVLHELLSLTIEKRMTSLQLDAFHSESLL 300

Query: 326 PTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDMS 385
           P++LLLCL+K+ GIFYITNKGARSTVFLKEAY+GS LIDKCPLLL +D+F++L GRR+ +
Sbjct: 301 PSRLLLCLVKNPGIFYITNKGARSTVFLKEAYDGSNLIDKCPLLLFNDKFVALSGRRESN 360

Query: 386 -CN 388
            CN
Sbjct: 361 FCN 363

[Close]
BLAST of Lsi03G001310 vs. TrEMBL
Match: F6HJ48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00260 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.1e-144
Identity = 257/365 (70.41%), Postives = 310/365 (84.93%), Query Frame = 1 

Query: 24  GFLWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRD 83
           G +WV + H S GG RPK+KIY+RV ELD+VM+L+KKP LIL+L +IIQSQKH+ + LRD
Sbjct: 10  GSVWVQIMHISSGGRRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSLLLRD 69

Query: 84  LEKEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPI 143
           LEK+VGFV KWNFMAVIEKY SIF V +G +R PP V L+ KA+ IA EE + +  MEPI
Sbjct: 70  LEKQVGFVHKWNFMAVIEKYPSIFRV-NGGNRTPPSVELTEKAKRIADEETEARKQMEPI 129

Query: 144 LVKNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHL 203
           LV+NLRKLLM+SVDCR+PLENIEFI SELGLP DF+ +LIP+YPEFFSVK+ +G+A+L L
Sbjct: 130 LVENLRKLLMMSVDCRVPLENIEFIESELGLPQDFKETLIPKYPEFFSVKDFNGRAYLQL 189

Query: 204 ENWDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYL 263
           ENWDSSLA++ARE RFAR R L S  + ++ R+SKDGNFSGP+AF + +P GFRPNMSYL
Sbjct: 190 ENWDSSLAVTAREKRFARERVLDSVGHARKARVSKDGNFSGPYAFLMSYPAGFRPNMSYL 249

Query: 264 EHLERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEF 323
           E ++RWQKM+FPSPYLNARRF+AADPKARKRVVAVLHE LSLT+EKRMTS QLDAFH EF
Sbjct: 250 EEVQRWQKMEFPSPYLNARRFEAADPKARKRVVAVLHELLSLTMEKRMTSAQLDAFHSEF 309

Query: 324 LLPTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRD 383
           LLP +LLLCL+KH GIFYITNKGARSTVFLKEAY+GS LI+K PLL  +++F++L GRR+
Sbjct: 310 LLPARLLLCLIKHHGIFYITNKGARSTVFLKEAYDGSNLIEKSPLLGFNNKFVALSGRRE 369

Query: 384 MS-CN 388
            + CN
Sbjct: 370 STLCN 373

[Close]
BLAST of Lsi03G001310 vs. TAIR10
Match: AT1G79120.1 (AT1G79120.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 498.8 bits (1283), Expect = 3.0e-141
Identity = 247/367 (67.30%), Postives = 300/367 (81.74%), Query Frame = 1 

Query: 27  WVLMRHKSIGG-MRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE 86
           +V +RHKS GG  RPK+K+Y+RV +LDK ++L KKPSLIL+L +IIQ+QKH  + LRDLE
Sbjct: 43  FVQVRHKSGGGGWRPKQKVYHRVHDLDKAIDLNKKPSLILQLKSIIQAQKHGSLLLRDLE 102

Query: 87  KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILV 146
           K VGFV KWN MA IEKY +IFYVG G    PP+V L+ KA+ IA+EE +   +MEPILV
Sbjct: 103 KHVGFVHKWNLMAAIEKYPTIFYVGGGHKE-PPFVMLTEKAKKIAAEESEATESMEPILV 162

Query: 147 KNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLEN 206
            NLRKLLM+SVDCR+PLE +EFI S +GLP DF+++LIP+Y EFFS+K ++GK +L LEN
Sbjct: 163 NNLRKLLMMSVDCRVPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLEN 222

Query: 207 WDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEH 266
           WDSSLAI+AREDR +R     S    KRVRI+KDGNF G  AFKI FPPGFRPN SYLE 
Sbjct: 223 WDSSLAITAREDRLSREGFSESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEE 282

Query: 267 LERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLL 326
            E+WQKM+FPSPYLNARRFDAADPKARKRVVAVLHE LSLT+EKR+T  QLDAFH E+LL
Sbjct: 283 FEKWQKMEFPSPYLNARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLL 342

Query: 327 PTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDMS 386
           P++L+LCL+KHQGIFYITNKGAR TVFLK+AY GS LI+KCPLLL  DRF++LCGR++++
Sbjct: 343 PSRLILCLIKHQGIFYITNKGARGTVFLKDAYAGSNLIEKCPLLLFHDRFVALCGRKEVN 402

Query: 387 CNSHQVS 393
            ++   S
Sbjct: 403 LSNEMQS 408

[Close]
BLAST of Lsi03G001310 vs. TAIR10
Match: AT5G21970.1 (AT5G21970.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-46
Identity = 117/370 (31.62%), Postives = 190/370 (51.35%), Query Frame = 1 

Query: 17  NPIYKESGFLWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKH 76
           N +Y ES F  V +R  +       R    RV EL+   E  K  S ++ L+ +++ ++ 
Sbjct: 27  NVLYGESSFRRVWVRFMTSSKRVQDRSREKRVQELEIATEKWKIASKVIFLMEVLKGERD 86

Query: 77  KFIFLRDLE---KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEE 136
             + +R  E   +++   +       I K   +F +     R   +  L+   E +  E 
Sbjct: 87  MIMTVRSFEQYRRQINLPKPHKISDFIRKSPKLFELYK-DQRGVLWCGLTEGGEDLLDEH 146

Query: 137 DKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVK 196
           DK+         +++ + LM+SVD ++PL+ I     + GLP DFR + +  +P+ F V 
Sbjct: 147 DKLLEENGDKAAEHVTRCLMMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVV 206

Query: 197 EV-DGKAHLHLENWDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICF 256
           ++ DG+ +L L +W+ + AI+  E +     +   C +       K G  S   AF + F
Sbjct: 207 KLGDGEEYLELVSWNPAWAITELEKKTLGITE--DCEH-------KPGMLS--LAFPMKF 266

Query: 257 PPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMT 316
           PP ++    Y   +E +QK  + SPY +AR  +A   +  KR +AV+HE LS TLEKR+ 
Sbjct: 267 PPSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAIAVMHELLSFTLEKRLV 326

Query: 317 STQLDAFHKEFLLPTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHS 376
           +  L  F +EF++P KL+   LKH GIFY++ +G R +VFL E YEG  LI+KCPL+L  
Sbjct: 327 TDHLTHFRREFVMPQKLMRIFLKHCGIFYVSERGKRFSVFLTEGYEGPELIEKCPLILWK 384

Query: 377 DRFLSLCGRR 383
           ++ L   G R
Sbjct: 387 EKLLKFTGYR 384

[Close]
BLAST of Lsi03G001310 vs. TAIR10
Match: AT4G01037.1 (AT4G01037.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 116/352 (32.95%), Postives = 186/352 (52.84%), Query Frame = 1 

Query: 38  MRPKRKIYYRVGEL--DKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEK---EVGFVQ 97
           + P R    R  EL  D V++  KK  L+L +  I+ SQ  + + LR L K   ++G  +
Sbjct: 69  VEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKK 128

Query: 98  KWNFMAVIEKYSSIFYV---GSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILVKNLR 157
           +  F+A++ KY  +F +   G+ S R     +++++AE +  +E ++++ +E +LV  LR
Sbjct: 129 RRRFIALLRKYPGVFEIVEEGAYSLRF----KMTSEAERLYLDEMRIRNELEDVLVVKLR 188

Query: 158 KLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLENWDSS 217
           KL+M+S+D RI LE I  + ++LGLP +FR ++   YP++F V        L L +WD  
Sbjct: 189 KLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPE 248

Query: 218 LAISAREDRFARARDLSSCVYGKRVRISKDGNF---SGPFAFKICFPPGFRPNMSYLEHL 277
           LA+SA E        LS      R R S++ N      P   ++  P G   + S    +
Sbjct: 249 LAVSAAE--------LSE--DDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKI 308

Query: 278 ERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLP 337
            +++ M + SPY +     +   +  K    V+HE LSLT EKR     L  F +EF   
Sbjct: 309 SQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFS 368

Query: 338 TKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSL 379
            +L   L++H  +FY++ KG R +VFL+EAY  S LIDK PL L  ++  +L
Sbjct: 369 QQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRAL 406

[Close]
BLAST of Lsi03G001310 vs. TAIR10
Match: AT5G48040.1 (AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-34
Identity = 102/340 (30.00%), Postives = 167/340 (49.12%), Query Frame = 1 

Query: 50  ELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDL---EKEVGFVQKWNFMAVIEKYSSI 109
           ELD V+  +K    +  L+++I +     + +  L     ++G  Q+    A I +Y +I
Sbjct: 44  ELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELKLSAFIRRYPNI 103

Query: 110 F----YVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPL 169
           F    Y  S  + +P +  L+ +   +  EE  V    E  ++  L KLLML+ +  + L
Sbjct: 104 FVEHCYWDSAGTSVPCF-GLTRETIDLYYEEVDVSRVNERDVLVRLCKLLMLTCERTLSL 163

Query: 170 ENIEFIASELGLPYDFRTSLIPEYPEFFSV----KEVDGKAHLHLENWDSSLAISAREDR 229
            +I+ +  +LGLPYD+R SLI ++P+ FS+     ++DG   L L +WD  LA+S     
Sbjct: 164 HSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDG---LKLIHWDEHLAVS----- 223

Query: 230 FARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPY 289
                         ++++ +D       AF + F  GF      +E L+ WQ++ + SPY
Sbjct: 224 --------------QMQLREDVGNDERMAFPVKFTRGFGLKRKSIEWLQEWQRLPYTSPY 283

Query: 290 LNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQG 349
           ++A   D     + KR V V HE L LT+ K+     +    K F LP K      +H G
Sbjct: 284 VDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFERHPG 343

Query: 350 IFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSL 379
           IFYI+ K    TV L+EAY+   LI+K PL+   ++F ++
Sbjct: 344 IFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANM 360

[Close]
BLAST of Lsi03G001310 vs. TAIR10
Match: AT4G33495.1 (AT4G33495.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-33
Identity = 125/394 (31.73%), Postives = 200/394 (50.76%), Query Frame = 1 

Query: 6   MFLRLNPYLNFNPIYKESGFLW-----VLMRHKSIGGMRPKRKIYYRVGELDKVMELQKK 65
           +FLR N +   NP  K +  +      +L++  S     PK++   R    D  ME++KK
Sbjct: 3   LFLR-NAFKTLNPKRKLATTILPSINLILVKPFSQSTTIPKKQDRVRDHGYDNYMEVEKK 62

Query: 66  PSLILKLINIIQSQKHKFI---FLRDLEKEVGFVQKWNFM-AVIEKYSSIFYVGSGSSRM 125
              ++K  ++I SQ +  I    L  L + +G   K +   A + K+  +F +     + 
Sbjct: 63  IRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIYEHPVQR 122

Query: 126 PPYVRLSNKA-EWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELGLP 185
             Y RL+ KA + I  E + V   + P  V  LRKL+M+S   RI LE++    +E GLP
Sbjct: 123 ILYCRLTRKALDQIRHEHEAVLDQI-PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLP 182

Query: 186 YDFRTSLIPEYPEFFSVKEVDGKA----HLHLENWDSSLAISAREDRFARARDLSSCVYG 245
            DF  S+I ++P+FF +  +DG+     ++ +   D +L+I A E    R R++    Y 
Sbjct: 183 EDFEYSVILKHPQFFRL--IDGEETRDKYIEIVEKDPNLSICAIE----RVREIE---YR 242

Query: 246 KRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKA 305
            +   ++D  FS    F + FPPGF+    +   + +WQ++ + SPY +   +D    +A
Sbjct: 243 TKGIDAEDVRFS----FVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEA 302

Query: 306 R----KRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQGIFYIT---N 365
           +    KR VA +HE LSLT+EK++T  ++  F     LP KL   LL+HQGIFYI+   N
Sbjct: 303 QNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGN 362

Query: 366 KGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSL 379
            G   TVFL+E Y+   L++   + L   R   L
Sbjct: 363 YGKLHTVFLREGYKRGELVEPNDVYLARRRLAEL 381

[Close]
BLAST of Lsi03G001310 vs. NCBI nr
Match: gi|449443632|ref|XP_004139581.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus])

HSP 1 Score: 720.7 bits (1859), Expect = 1.4e-204
Identity = 359/399 (89.97%), Postives = 374/399 (93.73%), Query Frame = 1 

Query: 1   MNGKSMFLRLNPYLNFNPI-------YKESGFLWVLMRHKSIGGMRPKRKIYYRVGELDK 60
           MNGKSMFLRLN Y N  PI       +K+S FLWVLMRHKS GGMRPKRKIYYRV ELDK
Sbjct: 1   MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDK 60

Query: 61  VMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS 120
           VM+LQKKPSLILKLINIIQSQK+KFI LRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS
Sbjct: 61  VMDLQKKPSLILKLINIIQSQKNKFILLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS 120

Query: 121 SRMPPYVRLSNKAEWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELG 180
           SR+PPYVRLSNKAE IASEEDKVKSAMEPILVKNLRKLLMLSVDCR+PLENIEFIASELG
Sbjct: 121 SRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELG 180

Query: 181 LPYDFRTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREDRFARARDLSSCVYGKR 240
           LP DF+TSLIP+YPEFFSVKEVDGKAHLHLENWDSSLAI AREDRFA+ARDLSSC YGKR
Sbjct: 181 LPCDFKTSLIPKYPEFFSVKEVDGKAHLHLENWDSSLAICAREDRFAKARDLSSCGYGKR 240

Query: 241 VRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARK 300
           VRISKDGNFSGPFAFK+CFP GFRPN SYLEHLERWQKMDFPSPYLNARRFD ADPK RK
Sbjct: 241 VRISKDGNFSGPFAFKMCFPSGFRPNTSYLEHLERWQKMDFPSPYLNARRFDVADPKTRK 300

Query: 301 RVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQGIFYITNKGARSTVFL 360
           RVVAVLHEFLSLT+EKRMTSTQLDAFH+EFLLP+KLLLCL+KHQGIFYITNKGARSTVFL
Sbjct: 301 RVVAVLHEFLSLTMEKRMTSTQLDAFHREFLLPSKLLLCLVKHQGIFYITNKGARSTVFL 360

Query: 361 KEAYEGSTLIDKCPLLLHSDRFLSLCGRRDMSCNSHQVS 393
           KE YEGS L+DKCPLLLHSDRFLSLCGRRDMSCNSHQVS
Sbjct: 361 KEGYEGSILVDKCPLLLHSDRFLSLCGRRDMSCNSHQVS 399

[Close]
BLAST of Lsi03G001310 vs. NCBI nr
Match: gi|659071667|ref|XP_008461321.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 711.8 bits (1836), Expect = 6.4e-202
Identity = 353/399 (88.47%), Postives = 371/399 (92.98%), Query Frame = 1 

Query: 1   MNGKSMFLRLNPYLNFNPI-------YKESGFLWVLMRHKSIGGMRPKRKIYYRVGELDK 60
           MNGKSMFLRLN Y N  PI       +K+S FLWVLMRHKS GGMRPKRKIYYRV ELDK
Sbjct: 1   MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDK 60

Query: 61  VMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS 120
           VM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS
Sbjct: 61  VMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGS 120

Query: 121 SRMPPYVRLSNKAEWIASEEDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELG 180
           SR+PPYVRLSNKAE IASEEDKVKSAMEPILVKNLRKLLMLSVDCR+PLENIEFIASELG
Sbjct: 121 SRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELG 180

Query: 181 LPYDFRTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREDRFARARDLSSCVYGKR 240
           LP DF+TSLIP+YPEFFSVKE DGKAHL+LENWDSSLA+ ARED F +ARDLSSC  GKR
Sbjct: 181 LPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKR 240

Query: 241 VRISKDGNFSGPFAFKICFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARK 300
           VRISKDGNF GPFAFK+CFPPGFRPN SYLEHLERWQKMDFPSPYLNARRFD ADPK RK
Sbjct: 241 VRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPSPYLNARRFDVADPKTRK 300

Query: 301 RVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLLPTKLLLCLLKHQGIFYITNKGARSTVFL 360
           RVVAVLHEFLSLT+EKRMTSTQLDAFH+EFLLP+KLLLCL+KHQGIFYITNKGARSTVFL
Sbjct: 301 RVVAVLHEFLSLTMEKRMTSTQLDAFHREFLLPSKLLLCLVKHQGIFYITNKGARSTVFL 360

Query: 361 KEAYEGSTLIDKCPLLLHSDRFLSLCGRRDMSCNSHQVS 393
           KE YEGSTL+DKCPLLLHSDRFLSLCGRRD+SCN+HQVS
Sbjct: 361 KEGYEGSTLVDKCPLLLHSDRFLSLCGRRDVSCNTHQVS 399

[Close]
BLAST of Lsi03G001310 vs. NCBI nr
Match: gi|568848506|ref|XP_006478049.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Citrus sinensis])

HSP 1 Score: 535.4 bits (1378), Expect = 8.3e-149
Identity = 264/381 (69.29%), Postives = 317/381 (83.20%), Query Frame = 1 

Query: 13  YLNFNPIYKESGFLWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQ 72
           Y++ +  +  S  +WV M+ KS GG R K+KIY RV ELD+VMELQKKPSLIL+L +IIQ
Sbjct: 6   YISSSTPFPNSCSMWVPMKQKSTGGWRSKKKIYRRVHELDRVMELQKKPSLILQLKSIIQ 65

Query: 73  SQKHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASE 132
           SQK K + LRDLEK+VGFV KWNFMAVIEKY SIF+VG GS+R PP+V L+ KAE IA+E
Sbjct: 66  SQKQKCLLLRDLEKQVGFVHKWNFMAVIEKYPSIFHVGGGSNRKPPFVTLTEKAEKIANE 125

Query: 133 EDKVKSAMEPILVKNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSV 192
           E+  +  MEPILVKNLRKLLM+SVDCR+PLE IEFI SELGLP DF+ + +P+Y +FF+V
Sbjct: 126 EEVARELMEPILVKNLRKLLMMSVDCRVPLEKIEFIESELGLPQDFKKAFLPKYGDFFTV 185

Query: 193 KEVDGKAHLHLENWDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICF 252
           K+ +GK +L+L+NWD+SLA++ARE+R AR   L S    KRVRI+KDGN+SGP AFKICF
Sbjct: 186 KDTNGKPYLYLQNWDASLAVTAREERLAREGVLDSAGAQKRVRITKDGNYSGPNAFKICF 245

Query: 253 PPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMT 312
           P GFRPN SYLE LERWQ+M+FPSPYLNARRF+ ADPKARKRVVAVLHE LSLT+EKRMT
Sbjct: 246 PTGFRPNTSYLEQLERWQRMEFPSPYLNARRFELADPKARKRVVAVLHELLSLTMEKRMT 305

Query: 313 STQLDAFHKEFLLPTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHS 372
           S QLDAFH E++LP KLLLCL+KH GIFYITNKGARSTV LKEAY+GS LIDKCPLLL +
Sbjct: 306 SAQLDAFHSEYMLPHKLLLCLIKHHGIFYITNKGARSTVLLKEAYDGSNLIDKCPLLLCN 365

Query: 373 DRFLSLCGRRDM-SCNSHQVS 393
           D+F++L GRR++ SCN   +S
Sbjct: 366 DKFVALSGRREINSCNGKSLS 386

[Close]
BLAST of Lsi03G001310 vs. NCBI nr
Match: gi|595862784|ref|XP_007211465.1| (hypothetical protein PRUPE_ppa007448mg [Prunus persica])

HSP 1 Score: 533.1 bits (1372), Expect = 4.1e-148
Identity = 262/364 (71.98%), Postives = 307/364 (84.34%), Query Frame = 1 

Query: 26  LWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE 85
           +WV ++HKS GG RPKRK+Y+RV ELDKVM+ QKKP+LIL+L +IIQSQKH+ + LRDLE
Sbjct: 1   MWVPVKHKSSGGRRPKRKVYHRVHELDKVMDFQKKPALILQLKSIIQSQKHQSLLLRDLE 60

Query: 86  KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILV 145
           KEVGFVQKWNFMA IEKY SIFYVG G+ R PP+V L+ KA+ +A EE + K  MEPILV
Sbjct: 61  KEVGFVQKWNFMAAIEKYPSIFYVGGGN-RTPPFVTLAEKAKKVAREEAEAKDLMEPILV 120

Query: 146 KNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLEN 205
           KNLRKLLMLSVDCR+PLENIEFI SELGLP DF+ SL+P+YPE FSVKEV+GK HLHLEN
Sbjct: 121 KNLRKLLMLSVDCRVPLENIEFIESELGLPNDFKKSLLPKYPEIFSVKEVNGKLHLHLEN 180

Query: 206 WDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEH 265
           WDSS+A++ARE++       +    G +VRISKDGNF GP AF++ FP GFRPN SYLE 
Sbjct: 181 WDSSIAVTAREEQLGGEGISAPSGLGNKVRISKDGNFLGPHAFRMSFPAGFRPNTSYLEQ 240

Query: 266 LERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLL 325
           LERWQKMDFPSPYLNARRFD ADPK RKRVVAVLHE LSLT++KRMTS QLDAFH E+ L
Sbjct: 241 LERWQKMDFPSPYLNARRFDIADPKVRKRVVAVLHELLSLTMQKRMTSAQLDAFHSEYFL 300

Query: 326 PTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDM- 385
           P+KLLLCL+KH GIFYITNKGARSTVFLKEAY+G  LI+KCPLLL +D+F++L GRR++ 
Sbjct: 301 PSKLLLCLIKHPGIFYITNKGARSTVFLKEAYDGLNLINKCPLLLFNDKFVALSGRREIN 360

Query: 386 SCNS 389
           SC +
Sbjct: 361 SCKT 363

[Close]
BLAST of Lsi03G001310 vs. NCBI nr
Match: gi|567897140|ref|XP_006441058.1| (hypothetical protein CICLE_v10020719mg [Citrus clementina])

HSP 1 Score: 530.4 bits (1365), Expect = 2.7e-147
Identity = 262/368 (71.20%), Postives = 311/368 (84.51%), Query Frame = 1 

Query: 26  LWVLMRHKSIGGMRPKRKIYYRVGELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE 85
           +WV M+ KS GG R K+KIY RV ELD+VMELQKKPSLIL+L +IIQSQK K + LRDLE
Sbjct: 1   MWVPMKQKSTGGWRSKKKIYRRVHELDRVMELQKKPSLILQLKSIIQSQKQKCL-LRDLE 60

Query: 86  KEVGFVQKWNFMAVIEKYSSIFYVGSGSSRMPPYVRLSNKAEWIASEEDKVKSAMEPILV 145
           K+VGFV KWNFMAVIEKY SIF+VG GS+R PP+V L+ KAE IA EE+  +  MEPILV
Sbjct: 61  KQVGFVHKWNFMAVIEKYPSIFHVGGGSNRKPPFVTLTQKAEKIADEEEVARELMEPILV 120

Query: 146 KNLRKLLMLSVDCRIPLENIEFIASELGLPYDFRTSLIPEYPEFFSVKEVDGKAHLHLEN 205
           KNLRKLLM+SVDCR+PLE IEFI SELGLP DF+ + +P+Y +FF+VK+ +GK +L+L+N
Sbjct: 121 KNLRKLLMMSVDCRVPLEKIEFIESELGLPQDFKKAFLPKYDDFFTVKDTNGKPYLYLQN 180

Query: 206 WDSSLAISAREDRFARARDLSSCVYGKRVRISKDGNFSGPFAFKICFPPGFRPNMSYLEH 265
           WD+SLA++ARE+R AR   L S    KRVRI+KDGN+SGP AFKICFP GFRPN SYLE 
Sbjct: 181 WDASLAVTAREERLAREGVLDSAGAQKRVRITKDGNYSGPNAFKICFPAGFRPNTSYLEQ 240

Query: 266 LERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTLEKRMTSTQLDAFHKEFLL 325
           LERWQ+M+FPSPYLNARRF+ ADPKARKRVVAVLHE LSLT+EKRMTS QLDAFH E++L
Sbjct: 241 LERWQRMEFPSPYLNARRFELADPKARKRVVAVLHELLSLTMEKRMTSAQLDAFHSEYML 300

Query: 326 PTKLLLCLLKHQGIFYITNKGARSTVFLKEAYEGSTLIDKCPLLLHSDRFLSLCGRRDM- 385
           P KLLLCL+KH GIFYITNKGARSTV LKEAY+GS LIDKCPLLL++D+F++L GRR++ 
Sbjct: 301 PHKLLLCLIKHHGIFYITNKGARSTVLLKEAYDGSNLIDKCPLLLYNDKFVALSGRREIN 360

Query: 386 SCNSHQVS 393
           SCN   +S
Sbjct: 361 SCNGKSLS 367

The following BLAST results are available for this feature:
BLAST of Lsi03G001310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPD1_ARATH2.2e-3231.73Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1[more]
BLAST of Lsi03G001310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVT2_CUCSA9.7e-20589.97Uncharacterized protein OS=Cucumis sativus GN=Csa_1G164710 PE=4 SV=1[more]
M5WG21_PRUPE2.9e-14871.98Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007448mg PE=4 SV=1[more]
V4T294_9ROSI1.9e-14771.20Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020719mg PE=4 SV=1[more]
A0A067JMI5_JATCU9.2e-14771.90Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22647 PE=4 SV=1[more]
F6HJ48_VITVI1.1e-14470.41Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00260 PE=4 SV=... [more]
BLAST of Lsi03G001310 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79120.13.0e-14167.30 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT5G21970.11.6e-4631.62 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT4G01037.11.1e-4232.95 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT5G48040.15.5e-3430.00 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT4G33495.11.2e-3331.73 Ubiquitin carboxyl-terminal hydrolase family protein[more]
BLAST of Lsi03G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443632|ref|XP_004139581.1|1.4e-20489.97PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus][more]
gi|659071667|ref|XP_008461321.1|6.4e-20288.47PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo][more]
gi|568848506|ref|XP_006478049.1|8.3e-14969.29PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Citrus sinensis][more]
gi|595862784|ref|XP_007211465.1|4.1e-14871.98hypothetical protein PRUPE_ppa007448mg [Prunus persica][more]
gi|567897140|ref|XP_006441058.1|2.7e-14771.20hypothetical protein CICLE_v10020719mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021099PORR_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001310.1Lsi03G001310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 47..382
score: 4.2E
NoneNo IPR availablePANTHERPTHR31476FAMILY NOT NAMEDcoord: 29..387
score: 8.7E
NoneNo IPR availablePANTHERPTHR31476:SF11UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEINcoord: 29..387
score: 8.7E