Lsi02G028060 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G028060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome C-type biogenesis protein
Location	chr02 : 34252092 .. 34253019 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGGGCAACTGTTCTAATTCTTGTTTCCTCAATTGCTAATAGTTTTATGTTGTTGATTTGATTTTTGCATCTGATATACGGTGATTAGGTCAATCTTGGTTTTTCTAAATTATTGATTATATATATTCTGTGTATTTAGCTGATGTTAGGCCCGAAGTTCCCGAATCAAGGAAAAAACCAGTCGGTCGGTTTAAATTCAAAAACTGTTATTAGTATTAGTATTATTATTATATATTTTTTCCTGTTTATATTTTAAAGAACTTACAAGATTATTTACTCTACACAAATCTATGACAACGTCACAACGATAATGGAAGTTATAGAATACTGTATAAAAGAAGGATAAACTCGATTATATTTTAACATTACTATTTTTGGGAGTTCATGCTGTTTAGGCTAAACTCTTGAACCTTTGAGCAACTTGCTTAACTAAATTCGGTATAAAATTCTTTTGCTTTTCACTTTTTTTCGATTCCATTAATCCCATTGAGAATTCATAGTGTTCTTTATGAGGAAAATAACCAGGGCTAGATTCATAATGTTTACTTCTTCCTCTTTGTAGTTCGATAACATTGTAACTGGAACTTGATCTGCTATTTATGAGATTTTCAGCTGAAGAAAGTTTAAACTTTTAAGCTTGATTTATCTTTAACGTGTATTTTGCATTTAAATGATTTCTTGGTATTTTCTTGCAGTTGCAGTGCAGTCTGGTCACGCTCCATGGTGTCTAAAATGGAGAGTGATGAGAATGCTGTGAAAAAAACACAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATCGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATCGCGATTCTCCTCAGAAAGGTACCATTTCTTTTAGATAAACTCCGAGGTAGACAAATTAACTAA

mRNA sequence

ATGGGTTGCAGTGCAGTCTGGTCACGCTCCATGGTGTCTAAAATGGAGAGTGATGAGAATGCTGTGAAAAAAACACAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATCGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATCGCGATTCTCCTCAGAAAGGTACCATTTCTTTTAGATAAACTCCGAGGTAGACAAATTAACTAA

Coding sequence (CDS)

ATGGGTTGCAGTGCAGTCTGGTCACGCTCCATGGTGTCTAAAATGGAGAGTGATGAGAATGCTGTGAAAAAAACACAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATCGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATCGCGATTCTCCTCAGAAAGGTACCATTTCTTTTAGATAAACTCCGAGGTAGACAAATTAACTAA

Protein sequence

MGCSAVWSRSMVSKMESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLRGRQIN

Homology

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BLAST of Lsi02G028060 vs. Swiss-Prot
Match: CCMH_ORYSI (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica GN=CCMH PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-13
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 19 ENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          E  VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRK+
Sbjct: 4  EEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKL 48

[Close]

BLAST of Lsi02G028060 vs. Swiss-Prot
Match: CCMH_ORYSJ (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica GN=CCMH PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-13
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 19 ENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          E  VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRK+
Sbjct: 4  EEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKL 48

[Close]

BLAST of Lsi02G028060 vs. Swiss-Prot
Match: CCMH_ARATH (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMH PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.7e-13
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          ME  +   KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR++
Sbjct: 1  MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQL 49

[Close]

BLAST of Lsi02G028060 vs. TrEMBL
Match: A0A0A0L351_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099640 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-16
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. TrEMBL
Match: A0A067KYD7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06311 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          MES+++ VKKTQ+VEARARNISHNVRC ECGSQSIEDSQADIAILLRK+
Sbjct: 1  MESEDDVVKKTQVVEARARNISHNVRCTECGSQSIEDSQADIAILLRKL 49

[Close]

BLAST of Lsi02G028060 vs. TrEMBL
Match: W9REF6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026221 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-14
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+D + VKK QLVEARARNISHNVRC ECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MENDVDEVKKVQLVEARARNISHNVRCTECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. TrEMBL
Match: A0A164XBN1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016208 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          MES EN VK +Q+V+ARARNISHNVRC ECGSQSIEDSQADIA+LLRK+
Sbjct: 1  MESQENDVKSSQVVDARARNISHNVRCTECGSQSIEDSQADIAVLLRKL 49

[Close]

BLAST of Lsi02G028060 vs. TrEMBL
Match: A0A0V0GH52_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLL 68
          ME +E+ V K +LVEARARNISHNVRC ECGSQSIEDSQADIAILLRKV  ++
Sbjct: 1  MEGEEDQVTKERLVEARARNISHNVRCTECGSQSIEDSQADIAILLRKVCLII 53

[Close]

BLAST of Lsi02G028060 vs. TAIR10
Match: AT1G15220.1 (AT1G15220.1 cytochrome c biogenesis protein family)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-14
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          ME  +   KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR++
Sbjct: 1  MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQL 49

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: gi|449463154|ref|XP_004149299.1| (PREDICTED: uncharacterized protein LOC101208019 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-16
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: gi|659102762|ref|XP_008452301.1| (PREDICTED: uncharacterized protein LOC103493367 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: gi|802604001|ref|XP_012073382.1| (PREDICTED: uncharacterized protein LOC105635014 [Jatropha curcas])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          MES+++ VKKTQ+VEARARNISHNVRC ECGSQSIEDSQADIAILLRK+
Sbjct: 1  MESEDDVVKKTQVVEARARNISHNVRCTECGSQSIEDSQADIAILLRKL 49

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: gi|719980011|ref|XP_010249661.1| (PREDICTED: uncharacterized protein LOC104592148 [Nelumbo nucifera])

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-14
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME +E+AVKK Q+VEARARNISHNVRC ECGSQSIEDSQAD+AILLRK+  + D++R
Sbjct: 1  MEGEEDAVKKAQMVEARARNISHNVRCTECGSQSIEDSQADVAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: gi|703104761|ref|XP_010098087.1| (hypothetical protein L484_026221 [Morus notabilis])

HSP 1 Score: 84.3 bits (207), Expect = 9.7e-14
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+D + VKK QLVEARARNISHNVRC ECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MENDVDEVKKVQLVEARARNISHNVRCTECGSQSIEDSQADIAILLRKL--IRDEIR 55

The following BLAST results are available for this feature:

BLAST of Lsi02G028060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCMH_ORYSI	2.8e-13	80.00	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
CCMH_ORYSJ	2.8e-13	80.00	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
CCMH_ARATH	3.7e-13	73.47	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]

BLAST of Lsi02G028060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L351_CUCSA	4.3e-16	82.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099640 PE=4 SV=1	[more]
A0A067KYD7_JATCU	1.4e-14	85.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06311 PE=4 SV=1	[more]
W9REF6_9ROSA	6.8e-14	77.19	Uncharacterized protein OS=Morus notabilis GN=L484_026221 PE=4 SV=1	[more]
A0A164XBN1_DAUCA	1.5e-13	81.63	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016208 PE=4 SV=1	[more]
A0A0V0GH52_SOLCH	2.6e-13	77.36	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Lsi02G028060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15220.1	2.1e-14	73.47	cytochrome c biogenesis protein family	[more]

BLAST of Lsi02G028060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463154\|ref\|XP_004149299.1\|	6.1e-16	82.46	PREDICTED: uncharacterized protein LOC101208019 [Cucumis sativus]	[more]
gi\|659102762\|ref\|XP_008452301.1\|	1.4e-15	82.46	PREDICTED: uncharacterized protein LOC103493367 [Cucumis melo]	[more]
gi\|802604001\|ref\|XP_012073382.1\|	2.0e-14	85.71	PREDICTED: uncharacterized protein LOC105635014 [Jatropha curcas]	[more]
gi\|719980011\|ref\|XP_010249661.1\|	3.3e-14	75.44	PREDICTED: uncharacterized protein LOC104592148 [Nelumbo nucifera]	[more]
gi\|703104761\|ref\|XP_010098087.1\|	9.7e-14	77.19	hypothetical protein L484_026221 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005616	CcmH/CycL/Ccl2/NrfF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0043234	protein complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028060.1	Lsi02G028060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 15..62 score: 2.
None	No IPR available	PANTHER	PTHR30009	CYTOCHROME C-TYPE SYNTHESIS PROTEIN AND PTS TRANSMEMBRANE COMPONENT	coord: 19..62 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G028060	CmaCh17G007920	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G028060	CmoCh17G007600	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G028060	Cla015454	Watermelon (97103) v1	lsiwmB176
Lsi02G028060	ClCG09G001920	Watermelon (Charleston Gray)	lsiwcgB160
Lsi02G028060	Cla97C09G164040	Watermelon (97103) v2	lsiwmbB213
Lsi02G028060	Cp4.1LG12g08060	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G028060	Carg09516	Silver-seed gourd	carlsiB937

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G028060	Bottle gourd (USVL1VR-Ls)	lsilsiB117
Lsi02G028060	Cucumber (Gy14) v1	cgylsiB577
Lsi02G028060	Cucurbita maxima (Rimu)	cmalsiB051
Lsi02G028060	Cucurbita maxima (Rimu)	cmalsiB418
Lsi02G028060	Cucurbita maxima (Rimu)	cmalsiB823
Lsi02G028060	Cucurbita moschata (Rifu)	cmolsiB037
Lsi02G028060	Cucurbita moschata (Rifu)	cmolsiB405
Lsi02G028060	Cucurbita moschata (Rifu)	cmolsiB810
Lsi02G028060	Cucurbita pepo (Zucchini)	cpelsiB263
Lsi02G028060	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G028060	Cucumber (Chinese Long) v2	culsiB503
Lsi02G028060	Melon (DHL92) v3.5.1	lsimeB185
Lsi02G028060	Melon (DHL92) v3.5.1	lsimeB213
Lsi02G028060	Watermelon (Charleston Gray)	lsiwcgB204
Lsi02G028060	Watermelon (97103) v1	lsiwmB191
Lsi02G028060	Cucumber (Gy14) v2	cgyblsiB167
Lsi02G028060	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G028060	Melon (DHL92) v3.6.1	lsimedB194
Lsi02G028060	Melon (DHL92) v3.6.1	lsimedB222
Lsi02G028060	Silver-seed gourd	carlsiB106
Lsi02G028060	Silver-seed gourd	carlsiB114
Lsi02G028060	Silver-seed gourd	carlsiB176
Lsi02G028060	Silver-seed gourd	carlsiB684
Lsi02G028060	Cucumber (Chinese Long) v3	cuclsiB198
Lsi02G028060	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G028060	Watermelon (97103) v2	lsiwmbB199
Lsi02G028060	Wax gourd	lsiwgoB221
Lsi02G028060	Wax gourd	lsiwgoB270
Lsi02G028060	Wax gourd	lsiwgoB286