Cp4.1LG12g08060 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g08060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome c biogenesis protein family
Location	Cp4.1LG12 : 6521676 .. 6524693 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTCACTTTTTCTTGCTTGGGCGCCTTCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAGTCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCGACAGATTAATTACGTCTCTCATCTTCAGCAACGGATTGGCTAGATCTCTCCGTCTCCAGCGTGACCTGAGGTTTAATCTCTCTATCTCTGGCTCTCTCTATTTCTATCCAACCACCGCCTCCTTCATTTTACGGCCGCCGGCGAATCTGTCCCGATCCCAACTTTTCCCCCAATATCCCAAACCGGAATAAACCAAACCGAAACAGATCGCGGTTCAAAAACTAATTTCTCTTTTTCCTGATATCGGTTCCGTTTTCGGCTTAAGAAAACCGAATCGATAGTCGTTATATTCGATCGAATTGGTTTAGTGGCTGCATTTGTTGCCCTAATGGTGGGAAACTGGGGCCTGAGTGAATAACGGTTTCCTTCAAGGTTTCTGTTCCAATCCTCGCTTCCTGAATTGCTAATAGCTTCATGTTGATGAATTGATTTTAATACCTGATACGGTGAGCATGCCAATTTTAGTTATTCTAAATCCTTATTTCCTTCTGTGTATTTAGCTGATGTTATGCTCGAAGGCTCCGAATCTAAGAAAATTGAGAACTGAACCAGTTGGTCAGTTTGAATTCACAATTTTTTTTTTCTTGTTTATATTTCAAAATCTTACAGGATTATTTACTCTACACAAATGAATGATGATGATATTAAAAGTTACAAAATACTATATAAAAGAATGACGAACCCTTGATTTTTTTGGTGGAAATTCCTGCTGTTTAAGCTAAACTCTTGAACTTTTGAGCAACCTTCTTAGCTAAATTCGGTATGAATTTATTTTGCTTTTCATTTGATCGATTCCACAGAATCCATTGAGAATTCTTAGTATTCTATATGAGGAAGAACAATGGGAGGTAGATTCGTAATGTTTACTTTTCCCTCTTTGTAGTTTGATAAGATTGTAACTGGAACTTGATCTGCTTTTTTCTTTTTTTCTGACTTCTCGATGTTAATAAGATTTTCAGCTGTAGAAATTTTGAACTTCTAAACTTGATTTATCTTTAACTTGTATTTCGCATTCAAATAATTTTTTGGTATTTTCTTGCAATTGCAGTGCAGTCTGGTCAGAGCTGAGGCATCACAGTGTCTAAGATGGAGAGTGATGCGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCTGATATTGCGATTCTCCTTAGAAAGGTACCAGTTATTTAGATTGAACTCCATGCTTAACAAGTTAACTTAGCCGGAAAATCAGGGAAATTCTGGGAAAGAATTATAGGGAAGTTCAAGAGTCCTTCTCTCTTGTGCAAAATTGTCCCTTTTTTCCTTTTAAAGAAAGACAATATATATATATTAATGATGAAAAACAGGAAAAGCTCCTCATAAGAGTGCACCATACGGAGATTATAAGAATAATTTAGTCCCATGAGTGAAGAGGAGAGCCCAAGCCCACCGCTAACAAATATTGTTTGCTTTGACCCGTTATGTATCGTGGTCAGCCTCACGGTTTTAAAACGCATCTACTAGGGAGAGGTTTCCACACCCTTGTGAGGAATGCTTTCTTAACGATCCACCCCCTCTTGAGGACCCAACGTCCTTGCTGGCACACCGCCCGGTGGTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCCCGGGGGTGGTTTCATGATTCTTCTAGAGTTGTTGTTTTGATGCAAGAAATCTTCCTTAGAGTTAGAAGATTCCCTTCAAAATAACTATCTATGCTGGCAGCCCTTTGGAAATTCTTAATGCATATTTTTTGATAAACTCCATTGGATCATGAATGATGGACTAAAAAAGACTGACTCACCAGATCATGAATCTTTGCTACATGATGATTTCTCACAGATTTGTTGAGTTTTCTATCTTCTGTCAGTAATTTATGATCAATATTGTTTTGCATTAAACTTGCTTGATGTTTGGTCGTATTTGTAATATCACCATAGTTGATCCGTGATGAGATTCGGTCGGGGAAATCGGACAAGGAGATCTTTAAAAAGCTCGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTCGACCTCCAAACTGCAGCATTATGGCTATCACCGGTCAGTATATATCAGTAAGAAATTCAAAGATTAAATAAATATTTCTTCCCATTTCATGTAAAATTCTAGTTCTAAACATGTTACCTTGGAATATAGGTGTTAGTGGCTGGTGCTGCTGCTGGAGTATGGGCTTATAGCAAGTACAAGCAGAAGTCTAACGTTCATATCATGGCTTTAAATATAGTCAGGGGCGTTCCATTGACCCCTAGAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCACCTCAGAGAGCCGCTTCTTTATGGTGGAGGAGATGGCGTAGCCAGTGAGGTAACTACTCTCCATTGCTAGCTCGAACAACAGTCCTAAGAATTTCATGAGTATGGCACGGAATTTTGGCTCAAAGACAAGCAACACAAAATGAAGCAATGAAAGCTCCTCATTCAAGACAAACCGTGTCGTAATAATCACCTCGAGAAACATGTTTGGCGGTTTCGTTGAATAATTTTTCATGTCGGTGTCTTGTTTCTTCCCTCATTGCCCATTTTATGTATAAATAGGTATATTTCTTCAGTGATGTTATTGTTCAATTGGTTCAGACATGTGTTATCGATCAAGATTTTAGTAGTTTGAGTCACTCGTTTTATTACATTGAATGCAAAAGAAAGAAAGAAAGTATGTAAATTTCTTGAATTTTGATAATAAATGGCAGCCTTGATTGGGTGCTCCTCTAAGATTCTCGGTAAA

mRNA sequence

TATTTCACTTTTTCTTGCTTGGGCGCCTTCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAGTCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCGACAGATTAATTACGTCTCTCATCTTCAGCAACGGATTGGCTAGATCTCTCCGTCTCCAGCGTGACCTGAGGTTTAATCTCTCTATCTCTGGCTCTCTCTATTTCTATCCAACCACCGCCTCCTTCATTTTACGGCCGCCGGCGAATCTGTCCCGATCCCAACTTTTCCCCCAATATCCCAAACCGGAATAAACCAAACCGAAACAGATCGCGGTTCAAAAACTAATTTCTCTTTTTCCTGATATCGGTTCCGTTTTCGGCTTAAGAAAACCGAATCGATAGTCGTTATATTCGATCGAATTGGTTTAGTGGCTGCATTTGTTGCCCTAATGGTGGGAAACTGGGGCCTGAGTGAATAACGGTTTCCTTCAAGGTTTCTGTTCCAATCCTCGCTTCCTGAATTGCTAATAGCTTCATGTTGATGAATTGATTTTAATACCTGATACGTGCAGTCTGGTCAGAGCTGAGGCATCACAGTGTCTAAGATGGAGAGTGATGCGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCTGATATTGCGATTCTCCTTAGAAAGTTGATCCGTGATGAGATTCGGTCGGGGAAATCGGACAAGGAGATCTTTAAAAAGCTCGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTCGACCTCCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCTGGAGTATGGGCTTATAGCAAGTACAAGCAGAAGTCTAACGTTCATATCATGGCTTTAAATATAGTCAGGGGCGTTCCATTGACCCCTAGAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCACCTCAGAGAGCCGCTTCTTTATGGTGGAGGAGATGGCGTAGCCAGTGAGGTAACTACTCTCCATTGCTAGCTCGAACAACAGTCCTAAGAATTTCATGAGTATGGCACGGAATTTTGGCTCAAAGACAAGCAACACAAAATGAAGCAATGAAAGCTCCTCATTCAAGACAAACCGTGTCGTAATAATCACCTCGAGAAACATGTTTGGCGGTTTCGTTGAATAATTTTTCATGTCGGTGTCTTGTTTCTTCCCTCATTGCCCATTTTATGTATAAATAGGTATATTTCTTCAGTGATGTTATTGTTCAATTGGTTCAGACATGTGTTATCGATCAAGATTTTAGTAGTTTGAGTCACTCGTTTTATTACATTGAATGCAAAAGAAAGAAAGAAAGTATGTAAATTTCTTGAATTTTGATAATAAATGGCAGCCTTGATTGGGTGCTCCTCTAAGATTCTCGGTAAA

Coding sequence (CDS)

ATGGAGAGTGATGCGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCTGATATTGCGATTCTCCTTAGAAAGTTGATCCGTGATGAGATTCGGTCGGGGAAATCGGACAAGGAGATCTTTAAAAAGCTCGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTCGACCTCCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCTGGAGTATGGGCTTATAGCAAGTACAAGCAGAAGTCTAACGTTCATATCATGGCTTTAAATATAGTCAGGGGCGTTCCATTGACCCCTAGAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCACCTCAGAGAGCCGCTTCTTTATGGTGGAGGAGATGGCGTAGCCAGTGA

Protein sequence

MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ

Homology

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BLAST of Cp4.1LG12g08060 vs. Swiss-Prot
Match: CCMH_ORYSJ (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica GN=CCMH PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-64
Identity = 117/145 (80.69%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 8   VKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKL 67
           VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSDKEI+KKL
Sbjct: 7   VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIYKKL 66

Query: 68  ENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPL 127
           + DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY K++Q++NVHIMALN+VRGVPL
Sbjct: 67  QADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALNLVRGVPL 126

Query: 128 TPREKQTMLDLLSPPPPQRAASLWW 153
           TPREK+TMLD+L+PPPP   A+ WW
Sbjct: 127 TPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Cp4.1LG12g08060 vs. Swiss-Prot
Match: CCMH_ORYSI (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica GN=CCMH PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-64
Identity = 117/145 (80.69%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 8   VKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKL 67
           VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSDKEI+KKL
Sbjct: 7   VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIYKKL 66

Query: 68  ENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPL 127
           + DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY K++Q++NVHIMALN+VRGVPL
Sbjct: 67  QADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALNLVRGVPL 126

Query: 128 TPREKQTMLDLLSPPPPQRAASLWW 153
           TPREK+TMLD+L+PPPP   A+ WW
Sbjct: 127 TPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Cp4.1LG12g08060 vs. Swiss-Prot
Match: CCMH_ARATH (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMH PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-51
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME   +  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+ KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y K++ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPP-PPQRAASLWWRRW 156
           ++RGVPLTP+E+ T+LD+L PP PP +      RRW
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Cp4.1LG12g08060 vs. Swiss-Prot
Match: CCMH_BRADU (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=ccmH PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 1


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFK 65
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G S+ ++  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLENDYGETILYTPKFDLQTAALW-LSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRG 125
            L   YGE +L  P+F+ QT  LW L P+L+ G    +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 126 VPLTPREKQTMLDLLS 141
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

[Close]

BLAST of Cp4.1LG12g08060 vs. Swiss-Prot
Match: CCMH_RHIME (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) GN=ccmH PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-14
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 1


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFK 65
           D V     +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G SD+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 66  KLENDYGETILYTPKFDLQTAALWLSP--VLVAGAAAGVWAYSKYKQKSNVHIMALNIVR 125
            + + YGE +L  P+ + +T  LW  P  +LVAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 126 GVPLTPREKQTMLDLLSP 142
           G PL+  EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

[Close]

BLAST of Cp4.1LG12g08060 vs. TrEMBL
Match: A0A0A0L351_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099640 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 8.4e-75
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           K+I+KKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 159
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. TrEMBL
Match: M5W7K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025582mg PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-66
Identity = 126/159 (79.25%), Postives = 142/159 (89.31%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M S+ D VKKTQ+V ARA+NISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI +GKSD
Sbjct: 1   MGSEEDPVKKTQVVNARAQNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIHAGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLE D+GET+LY PKFD+QTAALWLSP+LVAGAAAG+WAY K++QK+NVHIMALN
Sbjct: 61  KEIYKKLEEDFGETVLYAPKFDMQTAALWLSPLLVAGAAAGIWAYKKHRQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQ-RAASLWWRRWRSQ 159
           +VRGVPLTP EKQTMLDLL+PPP +    S WWRRWR Q
Sbjct: 121 LVRGVPLTPNEKQTMLDLLTPPPSRGNIPSSWWRRWREQ 159

[Close]

BLAST of Cp4.1LG12g08060 vs. TrEMBL
Match: A0A061GCE6_THECC (Cytochrome c biogenesis protein family OS=Theobroma cacao GN=TCM_028774 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-66
Identity = 128/159 (80.50%), Postives = 142/159 (89.31%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+    VKK Q+VEARARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MENKDGEVKKAQVVEARARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLE DYGET+LY PKFDLQTAALWLSP+LVAGAAAG+WAY+K++Q +NVHIMALN
Sbjct: 61  KEIYKKLEEDYGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNKHRQNTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAA-SLWWRRWRSQ 159
           +VRGVPLTP+EK+TMLDLL+PPPPQ    S  W RWR Q
Sbjct: 121 LVRGVPLTPKEKETMLDLLTPPPPQGVTPSSLWSRWRGQ 159

[Close]

BLAST of Cp4.1LG12g08060 vs. TrEMBL
Match: V4TAP6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022630mg PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-66
Identity = 122/159 (76.73%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M S+ D +KK Q+ +ARARNIS NVRC +CGSQSIEDSQADIAILLRKLIRDEI++GK+D
Sbjct: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KE++KKLE+D+GET+LY PKFDLQTAALWLSP+LVAGAAAG+WAY++++QK+NVHIMALN
Sbjct: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQR-AASLWWRRWRSQ 159
           +VRGVPLTP+EK+TMLDLL+PPPPQR + S WWRRWR Q
Sbjct: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159

[Close]

BLAST of Cp4.1LG12g08060 vs. TrEMBL
Match: A0A067D5Z5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031429mg PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-66
Identity = 122/159 (76.73%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M S+ D +KK Q+ +ARARNIS NVRC +CGSQSIEDSQADIAILLRKLIRDEI++GK+D
Sbjct: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KE++KKLE+D+GET+LY PKFDLQTAALWLSP+LVAGAAAG+WAY++++QK+NVHIMALN
Sbjct: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQR-AASLWWRRWRSQ 159
           +VRGVPLTP+EK+TMLDLL+PPPPQR + S WWRRWR Q
Sbjct: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159

[Close]

BLAST of Cp4.1LG12g08060 vs. TAIR10
Match: AT1G15220.1 (AT1G15220.1 cytochrome c biogenesis protein family)

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-52
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME   +  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+ KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y K++ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPP-PPQRAASLWWRRW 156
           ++RGVPLTP+E+ T+LD+L PP PP +      RRW
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: gi|449463154|ref|XP_004149299.1| (PREDICTED: uncharacterized protein LOC101208019 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-74
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           K+I+KKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 159
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: gi|659102762|ref|XP_008452301.1| (PREDICTED: uncharacterized protein LOC103493367 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 141/158 (89.24%), Postives = 148/158 (93.67%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 159
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: gi|1012262630|ref|XP_015946513.1| (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Arachis duranensis])

HSP 1 Score: 266.2 bits (679), Expect = 3.8e-68
Identity = 129/159 (81.13%), Postives = 146/159 (91.82%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M SD D VKK Q+VEARAR+ISHNVRC ECGSQSIE+SQAD+AILLRKLIRDEIRSGKSD
Sbjct: 1   MASDDDPVKKNQIVEARARSISHNVRCTECGSQSIEESQADVAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLE+D+GET+LY PKFD+QTAALWLSPVL AGAAAGVWAYSK++QK+NVHIMALN
Sbjct: 61  KEIYKKLEDDFGETVLYAPKFDMQTAALWLSPVLFAGAAAGVWAYSKHRQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRA-ASLWWRRWRSQ 159
           +VRG+PLTPREK+TMLD+L+PPP Q A  S WWRRWR Q
Sbjct: 121 LVRGIPLTPREKETMLDVLTPPPSQVARTSSWWRRWRGQ 159

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: gi|1021585627|ref|XP_016182160.1| (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Arachis ipaensis])

HSP 1 Score: 265.8 bits (678), Expect = 4.9e-68
Identity = 128/159 (80.50%), Postives = 146/159 (91.82%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M S+ D +KK Q+VEARARNISHNVRC ECGSQSIE+SQAD+AILLRKLIRDEIRSGKSD
Sbjct: 1   MASEEDPLKKNQIVEARARNISHNVRCTECGSQSIEESQADVAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLE+D+GET+LY PKFD+QTAALWLSPVL AGAAAGVWAYSK++QK+NVHIMALN
Sbjct: 61  KEIYKKLEDDFGETVLYAPKFDMQTAALWLSPVLFAGAAAGVWAYSKHRQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRA-ASLWWRRWRSQ 159
           +VRG+PLTPREK+TMLD+L+PPP Q A  S WWRRWR Q
Sbjct: 121 LVRGIPLTPREKETMLDVLTPPPSQVARTSSWWRRWRGQ 159

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: gi|645222954|ref|XP_008218401.1| (PREDICTED: uncharacterized protein LOC103318749 [Prunus mume])

HSP 1 Score: 261.5 bits (667), Expect = 9.3e-67
Identity = 127/159 (79.87%), Postives = 142/159 (89.31%), Query Frame = 1


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           M S+ D VKKTQ+V ARARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI +GKSD
Sbjct: 1   MGSEEDPVKKTQVVNARARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIHAGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLE D+GET+LY PKFD+QTAALWLSP+LVAGAAAG+WAY K++QK+NVHIMALN
Sbjct: 61  KEIYKKLEEDFGETVLYAPKFDMQTAALWLSPLLVAGAAAGIWAYKKHRQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQ-RAASLWWRRWRSQ 159
           +VRGVPLTP EKQTMLDLL+PPP +    S WWRRWR Q
Sbjct: 121 LVRGVPLTPNEKQTMLDLLTPPPSRGNIPSSWWRRWREQ 159

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g08060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCMH_ORYSJ	3.3e-64	80.69	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
CCMH_ORYSI	3.3e-64	80.69	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
CCMH_ARATH	1.9e-51	64.10	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
CCMH_BRADU	3.3e-16	35.29	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
CCMH_RHIME	4.1e-14	36.23	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) GN...	[more]

BLAST of Cp4.1LG12g08060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L351_CUCSA	8.4e-75	88.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099640 PE=4 SV=1	[more]
M5W7K8_PRUPE	1.9e-66	79.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025582mg PE=4 SV=1	[more]
A0A061GCE6_THECC	2.5e-66	80.50	Cytochrome c biogenesis protein family OS=Theobroma cacao GN=TCM_028774 PE=4 SV=...	[more]
V4TAP6_9ROSI	3.2e-66	76.73	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022630mg PE=4 SV=1	[more]
A0A067D5Z5_CITSI	3.2e-66	76.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031429mg PE=4 SV=1	[more]

BLAST of Cp4.1LG12g08060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15220.1	1.1e-52	64.10	cytochrome c biogenesis protein family	[more]

BLAST of Cp4.1LG12g08060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463154\|ref\|XP_004149299.1\|	1.2e-74	88.61	PREDICTED: uncharacterized protein LOC101208019 [Cucumis sativus]	[more]
gi\|659102762\|ref\|XP_008452301.1\|	2.1e-74	89.24	PREDICTED: uncharacterized protein LOC103493367 [Cucumis melo]	[more]
gi\|1012262630\|ref\|XP_015946513.1\|	3.8e-68	81.13	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Arachis...	[more]
gi\|1021585627\|ref\|XP_016182160.1\|	4.9e-68	80.50	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Arachis...	[more]
gi\|645222954\|ref\|XP_008218401.1\|	9.3e-67	79.87	PREDICTED: uncharacterized protein LOC103318749 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005616	CcmH/CycL/Ccl2/NrfF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0008150	biological_process
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0043234	protein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g08060.1	Cp4.1LG12g08060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 9..135 score: 1.0
None	No IPR available	PANTHER	PTHR30009	CYTOCHROME C-TYPE SYNTHESIS PROTEIN AND PTS TRANSMEMBRANE COMPONENT	coord: 6..155 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g08060	CmoCh17G007600	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g08060	Cla015454	Watermelon (97103) v1	cpewmB131
Cp4.1LG12g08060	ClCG09G001920	Watermelon (Charleston Gray)	cpewcgB126
Cp4.1LG12g08060	Lsi02G028060	Bottle gourd (USVL1VR-Ls)	cpelsiB113
Cp4.1LG12g08060	Carg09516	Silver-seed gourd	carcpeB1424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g08060	Melon (DHL92) v3.6.1	cpemedB150
Cp4.1LG12g08060	Melon (DHL92) v3.6.1	cpemedB159
Cp4.1LG12g08060	Silver-seed gourd	carcpeB0182
Cp4.1LG12g08060	Silver-seed gourd	carcpeB0171
Cp4.1LG12g08060	Silver-seed gourd	carcpeB0280
Cp4.1LG12g08060	Silver-seed gourd	carcpeB1049
Cp4.1LG12g08060	Cucumber (Chinese Long) v3	cpecucB0156
Cp4.1LG12g08060	Cucumber (Chinese Long) v3	cpecucB0188
Cp4.1LG12g08060	Wax gourd	cpewgoB0190
Cp4.1LG12g08060	Wax gourd	cpewgoB0208
Cp4.1LG12g08060	Cucurbita pepo (Zucchini)	cpecpeB157
Cp4.1LG12g08060	Cucurbita pepo (Zucchini)	cpecpeB178
Cp4.1LG12g08060	Cucurbita pepo (Zucchini)	cpecpeB181
Cp4.1LG12g08060	Cucurbita pepo (Zucchini)	cpecpeB182
Cp4.1LG12g08060	Cucurbita pepo (Zucchini)	cpecpeB187
Cp4.1LG12g08060	Cucumber (Gy14) v1	cgycpeB0936
Cp4.1LG12g08060	Cucurbita maxima (Rimu)	cmacpeB257
Cp4.1LG12g08060	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g08060	Cucurbita maxima (Rimu)	cmacpeB466
Cp4.1LG12g08060	Cucurbita maxima (Rimu)	cmacpeB903
Cp4.1LG12g08060	Cucurbita moschata (Rifu)	cmocpeB221
Cp4.1LG12g08060	Cucurbita moschata (Rifu)	cmocpeB426
Cp4.1LG12g08060	Cucurbita moschata (Rifu)	cmocpeB839
Cp4.1LG12g08060	Wild cucumber (PI 183967)	cpecpiB163
Cp4.1LG12g08060	Cucumber (Chinese Long) v2	cpecuB161
Cp4.1LG12g08060	Bottle gourd (USVL1VR-Ls)	cpelsiB127
Cp4.1LG12g08060	Watermelon (Charleston Gray)	cpewcgB148
Cp4.1LG12g08060	Watermelon (97103) v1	cpewmB145
Cp4.1LG12g08060	Melon (DHL92) v3.5.1	cpemeB123
Cp4.1LG12g08060	Melon (DHL92) v3.5.1	cpemeB132
Cp4.1LG12g08060	Cucumber (Gy14) v2	cgybcpeB306
Cp4.1LG12g08060	Cucumber (Gy14) v2	cgybcpeB906