Lsi02G027710 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G027710
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 33949718 .. 33949903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGTTGGCGTTATCGATAGGAAAAGACGGGATGATGCAAGCTTGCAGGCATCTCAAGGGGCAGTCGGAGAAGGAGACACCGGGCGTGAGGGCGCATATGACGAAGCAGGTGGCGTAGCATTCTTGAAAGGAGGTGGAATTGGCCGTGGAGATCAGCGAGGTCAGCAGCAGCCAAGACATTAA

mRNA sequence

ATGAACGTTGGCGTTATCGATAGGAAAAGACGGGATGATGCAAGCTTGCAGGCATCTCAAGGGGCAGTCGGAGAAGGAGACACCGGGCGTGAGGGCGCATATGACGAAGCAGGTGGCGTAGCATTCTTGAAAGGAGGTGGAATTGGCCGTGGAGATCAGCGAGGTCAGCAGCAGCCAAGACATTAA

Coding sequence (CDS)

ATGAACGTTGGCGTTATCGATAGGAAAAGACGGGATGATGCAAGCTTGCAGGCATCTCAAGGGGCAGTCGGAGAAGGAGACACCGGGCGTGAGGGCGCATATGACGAAGCAGGTGGCGTAGCATTCTTGAAAGGAGGTGGAATTGGCCGTGGAGATCAGCGAGGTCAGCAGCAGCCAAGACATTAA

Protein sequence

MNVGVIDRKRRDDASLQASQGAVGEGDTGREGAYDEAGGVAFLKGGGIGRGDQRGQQQPRH
Homology
[Close]
BLAST of Lsi02G027710 vs. TrEMBL
Match: A0A0A0K910_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441630 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.3e-14
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 2  NVGVIDRKRRDDASLQASQGAVGEGDTGREGAYDEAGGVAFLKGGGIGRGDQRGQQQPRH 61
          ++G+++RKRRDDASLQASQ AVGEG+ G +GAYDEAGGVAFLK GGI  G +RGQQQP H
Sbjct: 38 DIGIVNRKRRDDASLQASQWAVGEGNAGCDGAYDEAGGVAFLKRGGIS-GGERGQQQPSH 96

[Close]
BLAST of Lsi02G027710 vs. NCBI nr
Match: gi|700190111|gb|KGN45344.1| (hypothetical protein Csa_7G441630 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 2  NVGVIDRKRRDDASLQASQGAVGEGDTGREGAYDEAGGVAFLKGGGIGRGDQRGQQQPRH 61
          ++G+++RKRRDDASLQASQ AVGEG+ G +GAYDEAGGVAFLK GGI  G +RGQQQP H
Sbjct: 38 DIGIVNRKRRDDASLQASQWAVGEGNAGCDGAYDEAGGVAFLKRGGIS-GGERGQQQPSH 96

The following BLAST results are available for this feature:
BLAST of Lsi02G027710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi02G027710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K910_CUCSA9.3e-1473.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441630 PE=4 SV=1[more]
BLAST of Lsi02G027710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi02G027710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190111|gb|KGN45344.1|1.3e-1373.33hypothetical protein Csa_7G441630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G027710.1Lsi02G027710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G027710Cp4.1LG12g07990Cucurbita pepo (Zucchini)cpelsiB113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G027710Bottle gourd (USVL1VR-Ls)lsilsiB117
Lsi02G027710Cucumber (Gy14) v1cgylsiB577
Lsi02G027710Cucurbita maxima (Rimu)cmalsiB051
Lsi02G027710Cucurbita maxima (Rimu)cmalsiB238
Lsi02G027710Cucurbita maxima (Rimu)cmalsiB348
Lsi02G027710Cucurbita maxima (Rimu)cmalsiB418
Lsi02G027710Cucurbita maxima (Rimu)cmalsiB823
Lsi02G027710Cucurbita moschata (Rifu)cmolsiB037
Lsi02G027710Cucurbita moschata (Rifu)cmolsiB225
Lsi02G027710Cucurbita moschata (Rifu)cmolsiB337
Lsi02G027710Cucurbita moschata (Rifu)cmolsiB405
Lsi02G027710Cucurbita moschata (Rifu)cmolsiB810
Lsi02G027710Cucurbita pepo (Zucchini)cpelsiB442
Lsi02G027710Wild cucumber (PI 183967)cpilsiB517
Lsi02G027710Cucumber (Chinese Long) v2culsiB503
Lsi02G027710Melon (DHL92) v3.5.1lsimeB185
Lsi02G027710Melon (DHL92) v3.5.1lsimeB213
Lsi02G027710Watermelon (Charleston Gray)lsiwcgB160
Lsi02G027710Watermelon (Charleston Gray)lsiwcgB204
Lsi02G027710Watermelon (97103) v1lsiwmB176
Lsi02G027710Watermelon (97103) v1lsiwmB191
Lsi02G027710Cucumber (Gy14) v2cgyblsiB167
Lsi02G027710Cucumber (Gy14) v2cgyblsiB472
Lsi02G027710Melon (DHL92) v3.6.1lsimedB194
Lsi02G027710Melon (DHL92) v3.6.1lsimedB222
Lsi02G027710Silver-seed gourdcarlsiB106
Lsi02G027710Silver-seed gourdcarlsiB114
Lsi02G027710Silver-seed gourdcarlsiB176
Lsi02G027710Silver-seed gourdcarlsiB684
Lsi02G027710Silver-seed gourdcarlsiB937
Lsi02G027710Cucumber (Chinese Long) v3cuclsiB198
Lsi02G027710Cucumber (Chinese Long) v3cuclsiB538
Lsi02G027710Watermelon (97103) v2lsiwmbB199
Lsi02G027710Watermelon (97103) v2lsiwmbB213
Lsi02G027710Wax gourdlsiwgoB221
Lsi02G027710Wax gourdlsiwgoB270
Lsi02G027710Wax gourdlsiwgoB286