Cp4.1LG12g07990 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 6665424 .. 6665783 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATGTCCGAGAGCACGAATCCACACAGCTTCCCACTTTGTTTTCAGCTGCATCAACAAAACCAAGAACACTTCAATAAATTTTCATAAAATTTAGAAAAAAAAAGTTTAAATTATTAATTTTTAGAACCTGGGTTTTGGTGGGTGCTGAACTTGGTACACGAGGAGGTGGCGCAGCCGAGCTCGCAGAAGAACTGGTTTTTTTGTTGCCGGTGGACGTCGTCGGCGGCGGCGTTGTGGATAGGAAAAGATGGGATAATGCAGGCTTGGAGGCATCTCAATGGGCAGTCGGAGAAGGCGACGCCGGGCGTGATGGCGCATATGACGAAGCAGGTGGCGTAGCATTCTTGAAATGA

mRNA sequence

ATGGAGCATTTTAAATTATTAATTTTTAGAACCTGGGTTTTGGTGGGTGCTGAACTTGGTACACGAGGAGGTGGCGCAGCCGAGCTCGCAGAAGAACTGGTTTTTTTGTTGCCGGTGGACGTCGTCGGCGGCGGCGTTGTGGATAGGAAAAGATGGGATAATGCAGGCTTGGAGGCATCTCAATGGGCAGTCGGAGAAGGCGACGCCGGGCGTGATGGCGCATATGACGAAGCAGGTGGCGTAGCATTCTTGAAATGA

Coding sequence (CDS)

ATGGAGCATTTTAAATTATTAATTTTTAGAACCTGGGTTTTGGTGGGTGCTGAACTTGGTACACGAGGAGGTGGCGCAGCCGAGCTCGCAGAAGAACTGGTTTTTTTGTTGCCGGTGGACGTCGTCGGCGGCGGCGTTGTGGATAGGAAAAGATGGGATAATGCAGGCTTGGAGGCATCTCAATGGGCAGTCGGAGAAGGCGACGCCGGGCGTGATGGCGCATATGACGAAGCAGGTGGCGTAGCATTCTTGAAATGA

Protein sequence

MEHFKLLIFRTWVLVGAELGTRGGGAAELAEELVFLLPVDVVGGGVVDRKRWDNAGLEASQWAVGEGDAGRDGAYDEAGGVAFLK
Homology
[Close]
BLAST of Cp4.1LG12g07990 vs. TrEMBL
Match: A0A0A0K910_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441630 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 9  FRTWVLVGAELGTRGGGAAELAEELVFLL-PVDVVGGGVVDRKRWDNAGLEASQWAVGEG 68
          F+TW+L  A+L T G   A+LAEE++ LL P+D +G  +V+RKR D+A L+ASQWAVGEG
Sbjct: 5  FQTWILFCAKLSTGGSCTAKLAEEMILLLLPMDDIG--IVNRKRRDDASLQASQWAVGEG 64

Query: 69 DAGRDGAYDEAGGVAFLK 86
          +AG DGAYDEAGGVAFLK
Sbjct: 65 NAGCDGAYDEAGGVAFLK 80

[Close]
BLAST of Cp4.1LG12g07990 vs. NCBI nr
Match: gi|700190111|gb|KGN45344.1| (hypothetical protein Csa_7G441630 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-17
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 9  FRTWVLVGAELGTRGGGAAELAEELVFLL-PVDVVGGGVVDRKRWDNAGLEASQWAVGEG 68
          F+TW+L  A+L T G   A+LAEE++ LL P+D +G  +V+RKR D+A L+ASQWAVGEG
Sbjct: 5  FQTWILFCAKLSTGGSCTAKLAEEMILLLLPMDDIG--IVNRKRRDDASLQASQWAVGEG 64

Query: 69 DAGRDGAYDEAGGVAFLK 86
          +AG DGAYDEAGGVAFLK
Sbjct: 65 NAGCDGAYDEAGGVAFLK 80

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g07990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K910_CUCSA2.5e-1764.10Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441630 PE=4 SV=1[more]
BLAST of Cp4.1LG12g07990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g07990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190111|gb|KGN45344.1|3.6e-1764.10hypothetical protein Csa_7G441630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07990.1Cp4.1LG12g07990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07990Csa7G441630Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07990ClCG09G002240Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07990Lsi02G027710Bottle gourd (USVL1VR-Ls)cpelsiB113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07990Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07990Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g07990Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07990Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07990Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g07990Cucurbita moschata (Rifu)cmocpeB052
Cp4.1LG12g07990Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07990Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07990Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07990Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g07990Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g07990Watermelon (97103) v1cpewmB131
Cp4.1LG12g07990Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07990Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07990Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07990Melon (DHL92) v3.6.1cpemedB159
Cp4.1LG12g07990Silver-seed gourdcarcpeB0209
Cp4.1LG12g07990Silver-seed gourdcarcpeB0280
Cp4.1LG12g07990Silver-seed gourdcarcpeB1049
Cp4.1LG12g07990Silver-seed gourdcarcpeB1424
Cp4.1LG12g07990Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07990Wax gourdcpewgoB0208