Lsi02G021320 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G021320
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription initiation factor TFIID subunit 1-A
Locationchr02 : 27587922 .. 27593728 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTTCTTCCTTCCTTTATTTCTGTTCTCTCCCCAGTCTTCCTCCTCCGCCGCAGTGGCAACCGCTCGCCGGCAAGCCCCTACCATCATTCTCTCTATTCTCTTCCTCTCTTCTGCAACCTCCGCCGCCACGCCTTCTGCTGCCGCTCTCTTCATCTCTCCGTCGCTTGCCGCCAGGGTCCGATTTACGGTTCTTGCCCACCCCCGACACTAATTTCTCTAATTCTCGTTACATACTTGCGCCTAGACTAGGTGTAATGGATTCGAGGCCTATCATTATCCTACTTCTTTCAAAACTATTTTCTTTTTCTTCAACATTGGGACGTGGTCGTAAATTCACGAAGATTCTAATTACATGCTCACTTGATTTTTTTCTTTTAGAGCAAGCATAGCATAGCATACGGTGTTATATGTTGTTCTTGTAATTATGGTTCCCCCTTTTTTTTCCCTGTTAGAAGAGGAGTGGGTATTAGATGGGCGGCGAAACATATGGTGATTCCCCAGACGAAAGGGATGAAGGTAAGCCAGTTGAATTAAACCAGTTTCGGGCTCTTTGTTTGAATGAATTTGTTATCTTTTTATGTTAGGTAGTTTATAGTTTGATTGTCTAAACATCTTTTCTCTCTTATTGTTCTCTTCATCTTAGGCATGAGTGAGGTTGGTGGAGCAAACTGAAATCATGAGTTTTCATTAATGTCAAGTCTGCTATTCTATACATTTGTTCAAAAACATCTGGTATACGGTACCTGGGGTGTCTTATTTATAGGCTTAGTATGACAATGAAGTCAAATTATATTACAATGATCTTATAGTGAACGATCTCCTTAATTCTAATTTCCACAGTAATTATAAAAATTTATATCGACTGATACTAAGTAATTAGTATCTCATGGTAATTAAATTAGTCACGAGTTACCTACTTCAGACTCCTCCCCTTTCCCCCAACAGAAGTACTCGTACTGGAGTAGAAACCATTAACCCCACTGCTAGCATCTAACAGATGTGAGAGATTGATTGCATTTGAAGTGTGTAGATCTTGTGTTAGTGCAAGTACATAGCATTAGGTCTCACTTCTTTAAGAACTTGACATGGTTCAATCTAATGTAGGATGTCAGTCAATGTAGGTTGTTAGGCAATGAAGGATGTTTGGAAATTTTTGGAATACACAATGTAGGATCTTGTGGAACTTTCACATGTTTTGTATAGAGTCTTACGGTGCTCATCGTTTAGGGCTTTCTTTTGGTCATGCCCTTGGTGCATATCGTTTTGGGATCCAATAGTGGGAAACATCTTGAAACTCCTCACCTTATGTCGGTTAGTAAGACTTTGGAGAAGCTTTTGAGCAACATCTTATGGTTATGGAAAGGGGTGGATGAGGGGAAGGGTTAGGATGTGGTGACCAAGTTGTTGGATTGCACAGGGTAAGGCATAGGTAGCCTTAGGGCAAAAAACGAGGTATTGTAGTTGTTAACTTCAACAATTTTCAAAATCCATTTTAGAAACTAAAAACAAGAAATTCTGTATTATTGTTGATCATGAGTATAAAACCATGCATATACACTTATGATATTTTGACTGCAGATGACGACGACTATGAGGATGCTGGTGGCGGCAATCGATTATTGGGGTTTATGTTCGGTAATGTGGATAATTCTGGTGATCTTGACGCCGATTATCTTGATGAGGTAATATTATTGCTCGTTGTGGCATATTTGTAGAATTAGATCTGTTATAGGACAATGTACCTGGAATATGTAAGCTATGAACTCATTCTATTAGAAGATTTTCGTACCGAAATACTGGATTTGGCACCATAGATTTTGCAAATAGTCTTGTTATCTTCCACATATAAGCTGTTGCATTATGCAAATATTATGAAGAATGCCTTAACTTGTTACATTTGTAATGAATAGTTCTTTAAATAGTTTGACCTTTCATCTTATCTGTCTAGCACTTAATTTCTGATCATATCGTATTATGGATGCTGAGGATACAATCTTGTGTATTAGGATGCTAAGGAACATCTGGCTGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAAGTCTTTTAAGATTTTGAATATTATATAGTTTCATTTGTTTTTGGGGTCTTTGTATGTAGCTTCTTGTGTTTGTATACCTGTCTCATTTCTCTTTAATAACATATGACTACTGTGTCTTTCCGAGTTTGATAGGTTCTTATTGTTCTACCTTTTTTCTTTGAGGCCTGAAATTTTTCAATTTTTTCAGTTGTCAACGAAATCACCAAAAATACGATTGGAAGCTGTTGAACCAGGTGAAGTTGTATTCATGGAAAAAATTACCTAGTAGTCTTTCGAGTTTTCTTTTTATGTTTGATACCTTAATCTTCAAATACATTTTCACAATGCTTACTGAAAATATTTTGTGAACGGTGCACTTTCTAATCTTAGCAATGAAAGCAACTTAATATAGATCATTTTTAGTACAGGTGCTTTTGCTATTCTACAAACCAATGACTTCTAATTTGTTCAAGTTTTAGGGCTTTCTTACTTAATCTTGGGAGGATGTTAATTTATTTTTTTAGAAATAGGAATTAGGACAATCATTTTAGGTGTTATTTTAGTGCATATTTATTGTTAGAGTTTGATATACTAATGGGGCATGATAGGTATAGTTATATAGTAGGTTCGTTGATGGTATACATATGTAGTAGGTTCCTTGATGGTTACTCTAGTGTCCATGAAACGTACCAAACGTACCACCTTTCTCTTTTAGTAATAGCCTTACCTTTTTCCAGAGCAAAAATGAGACTCCATTTCTTTTTTATTTATATCAAAATCATGACTATTATACATCTATTTTTTGTTTGTTTGTTTCTTTTTCCTTTTTTTTTTGAAAAAAAGAAATTTATTGAGAAACAAATTTTATTAATGTATGAAATTTAAAAAAGAGGGGGACTTGGCGTTTCAAAAGACTTGTTCAATCAGACAAAAGTGAAGAGGAACTATAAGAGTTAAAAAGGGGTGCATCTACACCAAGAAAGAGCTGAAAGGAAGTTTTATAAAAAACTGTCAAAGGTTCTTCTCTTCTCGTTGAAAAGTTGATGATTTTGTTCTATCCATGTAGTCCATAAGAAAGCCCAAACGTGCATCCATATAACTTTCTTCCCTTTAGTGAATGGGTGGCTGGTAAAGGTGTGGTTGAGGAGGCTGTTTGGATCATTTGGGAGAGCCAAAGACTGGCGAAAGGCAGAGAGTAACTCTTTCCAAAACTTGTCTGCATGAGTACAAGTAAGAAAAATGTGCGTCTGTGGTTGACTTGTAGATCAGGCAGCACTGAGGGGACAAAGAACTGTGGGGTAGGCGTCCTTGTAATTTTTCGAAATTGTTGATGGCTTTGTGGGTTAAATAGAAAAAAATTTATTTCCTTGGGGTAAGAGACCCCTCCAAAATTGCTTCATATAATAGGCGTTGAGAAGAATCCAGATTGTTGGCAATGTTAAGTAAGATCAATAAGGCCCCATGGATGGTGTCTGCTCCGAGTTGGTGCGTCCTCTGTCATAAAAATGATGAAACCATTATGCACATCTTGGTTTTTTGTGAATTTGCTCAATCATTTTGGAGGAGAATTTTTAACCTGTTTCAATTATCATGTGGTTTTCCCAAATGACTCCTTATTTTATTGAATGTGCTTCTTATTGGTCATCCTTTCAAGCATGAGAAGGGAATTATGTGGAACTTCATCATCAAAGACTTCTTTTGCTCACTTGGAATGAACGAAATCATCGTATTTTTAAAGATCGGAAAACGGAATTTACACAATTTTCAGATCATCTTTCGTACACATCTATGTCATGGAGTAGATTCACCCCTTTTTTTGTGATTACAATCTTACTTCTCTTATAGCACAATGGAATAGCATCATGTAATATCTCATGCCTCATTTGCCCTTTTATAATTTCATACTAGCAATGAAATTATGTTTGAAAGTTTCTTATGAAAAAAAAAAGTAAGAGCAATTTTGTGGAGAAGTTCTCTTTGGAGTCAATTTTCCAGAACCATGGACAACTACCAGTTTCTCAAATAGTCTAGAGACTAAATTGTTACAAACTAAAGTTCAGAGATTACTTTCATAAAAGTTCAAAAACCTAAAGTGTTTTTTAACCTATTTATTTAGTATTTTTATTAAGTGTTCCTTGTTTTGGAATTGTATTCTATTTCAAGAAAACTTGTATCCATGTGCTTCTGGAGTTTACTCCAAAAAATATAGCCATTCCTTTTTTCGCAGACCTTGGATAAACATTTCTAAAGCATGGTCACAAGTTGAATTTTTTGCTTTGTTTAAACTTGGTATTGGCAACCGGATATCATTTTGGCAAGTTTCTTGGATTGATGGTTCTCTTCTAAATTTCAACTTTCCTCGCCTCATCATATTTGCTTTCCTTGCCTCATCATTCTGGCAAGTTTCTTGGATGGGAGGACTTTTCTTGTATGTCGTTCTTTAGGATCTTATTGGATCCGTCTCCTATTGTTGATTCGGTCTTTAATGTTTTATGGAGGATTAAGATTCCAAAGAAAGTCAAGTTCTTTTCCTGGCAAGTTTTGCTTGGTCATGTGAATACGTTGGATAAGCTGATGCAAAAGATGCCTTCGCTAATGGGTCCTTTTTGTTGTATCCTTTGTCAAAAGGTGGAGGAAAACTTGGGTCACCTTCTCTGGGAGTGTTAGTTCGCGAATTATGTTTGGAATGATCTCTTTCAGGAGTTTGATATATCGCTGGCTTGACAGAGGGATGTTTAGTTGATGATCGGGGAGTTCCTCCTCTACCTGCCCTTCAAAGAGAAATGCCGTTTTCTTTTGTTTGCGGGGATGTGTGTGTTATTGTGGGATCTTTGGGGGGAGAGGGACAAGTAGGTGTTTCGAGGTGTGGAGAGGGGCCCTAGTGAAGTTTGGTCTTTGGTAAGGTTTCATGCTTCTCTTTGGGCTTTAGTCTCGTAGTCTTTTTGTAATTATGCCCTAGGCAATATCTTACTTAGTTGGAAATCGTTCCTTTAGTGGGGTTTTTGTGGGCTTGGTTTTTTTGTATGCCCATTGCTGAAGAAGATATCAGAAGTATACTTGCATAGATCATAAATGTAAACGACATAGTACTATGGTCACTTCTGTGCCAAAGATATTACTTGGTTGCACGGTCACAGACGTAAAATGACAATATTTGTCTAGGCAAACTAGAAAGTAAAATTGTAGAGATTACATATTGTTCGTCCTAGTGAAAAGATCTTGGATGGTCCGTGGAGCTCATTTGCGAGCGTTTGCTTTCTTCTGTTCTTTGGCAGTCTTTTCTTCTTCCTTTTTCTTAGTAGCTTCTGCTGTTTGTTGACGAATAAGAGTCAAACGTTCTAAATATTTGCTAGCTTGTTTAGTCTTCCCTTATTCTTGAAGCCTCATGAATCGCTCATGAGCCTTTTGTTTCTCTTTCTCCTCCCTTTCACGCCTTGAAAGTTCAGTTATCTCTAGCTTTCAAGGTTTTTGGCTTCACCAAGTTAGGATTTTCAATCTCAATAATACCTTGAGTGCCTTTCCTTCTAGGTTTATCTCCTTGATCATCAGATTCATCCCCAAGTTCTTGTTCAGATCCTTCCTCAGATTCTTCCTCCTCCTTGTGCTCAGCTTCTATCTGTCTAAACGTTCATGGACGTGTGGAGGTTTCAGCAAGCATGTCTTCAGGGGTAGAGAATTGGTGTCGACCGGTGGGCTTGCTCTTGTACTTTCCTCTTCCCATTGTCGATGAAAAAACAGAAGGGGAAAAG

mRNA sequence

GAATTTCTTCCTTCCTTTATTTCTGTTCTCTCCCCAGTCTTCCTCCTCCGCCGCAGTGGCAACCGCTCGCCGGCAAGCCCCTACCATCATTCTCTCTATTCTCTTCCTCTCTTCTGCAACCTCCGCCGCCACGCCTTCTGCTGCCGCTCTCTTCATCTCTCCGTCGCTTGCCGCCAGGGTCCGATTTACGAAGAGGAGTGGGTATTAGATGGGCGGCGAAACATATGGTGATTCCCCAGACGAAAGGGATGAAGGGCTTTCTTTTGGTCATGCCCTTGGTGCATATCGTTTTGGGATCCAATAGTGGGAAACATCTTGAAACTCCTCACCTTATGTCGGTTAGTAAGACTTTGGAGAAGCTTTTGAGCAACATCTTATGGTTATGGAAAGGGGTGGATGAGGGGAAGGATGACGACGACTATGAGGATGCTGGTGGCGGCAATCGATTATTGGGGTTTATGTTCGGTAATGTGGATAATTCTGGTGATCTTGACGCCGATTATCTTGATGAGGATGCTAAGGAACATCTGGCTGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATTTGTCAACGAAATCACCAAAAATACGATTGGAAGCTGTTGAACCAGATTCATCCCCAAGTTCTTGTTCAGATCCTTCCTCAGATTCTTCCTCCTCCTTGTGCTCAGCTTCTATCTGTCTAAACGTTCATGGACGTGTGGAGGTTTCAGCAAGCATGTCTTCAGGGGTAGAGAATTGGTGTCGACCGGTGGGCTTGCTCTTGTACTTTCCTCTTCCCATTGTCGATGAAAAAACAGAAGGGGAAAAG

Coding sequence (CDS)

ATGGTGATTCCCCAGACGAAAGGGATGAAGGGCTTTCTTTTGGTCATGCCCTTGGTGCATATCGTTTTGGGATCCAATAGTGGGAAACATCTTGAAACTCCTCACCTTATGTCGGTTAGTAAGACTTTGGAGAAGCTTTTGAGCAACATCTTATGGTTATGGAAAGGGGTGGATGAGGGGAAGGATGACGACGACTATGAGGATGCTGGTGGCGGCAATCGATTATTGGGGTTTATGTTCGGTAATGTGGATAATTCTGGTGATCTTGACGCCGATTATCTTGATGAGGATGCTAAGGAACATCTGGCTGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATTTGTCAACGAAATCACCAAAAATACGATTGGAAGCTGTTGAACCAGATTCATCCCCAAGTTCTTGTTCAGATCCTTCCTCAGATTCTTCCTCCTCCTTGTGCTCAGCTTCTATCTGTCTAAACGTTCATGGACGTGTGGAGGTTTCAGCAAGCATGTCTTCAGGGGTAGAGAATTGGTGTCGACCGGTGGGCTTGCTCTTGTACTTTCCTCTTCCCATTGTCGATGAAAAAACAGAAGGGGAAAAG

Protein sequence

MVIPQTKGMKGFLLVMPLVHIVLGSNSGKHLETPHLMSVSKTLEKLLSNILWLWKGVDEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPDSSPSSCSDPSSDSSSSLCSASICLNVHGRVEVSASMSSGVENWCRPVGLLLYFPLPIVDEKTEGEK
Homology
[Close]
BLAST of Lsi02G021320 vs. Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           DD+DY++ GGGN  LGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DIDL   
Sbjct: 21  DDEDYDEPGGGNHFLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDL--- 80

Query: 122 SPKIRLEAVEPDSSPSSCSDPSSDSSS 149
                   ++P ++P+  S+   D+ +
Sbjct: 81  --------IKPSAAPTDPSEQDYDAKA 96

[Close]
BLAST of Lsi02G021320 vs. Swiss-Prot
Match: TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           DDD+YED   G  L GF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +L DI+L  K
Sbjct: 17  DDDEYEDNSRGFNL-GFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSSLPDINLLAK 76

Query: 122 SPKIRLEAVEPD 134
           S +   +  E D
Sbjct: 77  SERTASDPAEQD 87

[Close]
BLAST of Lsi02G021320 vs. TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-28
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 58  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID 117
           +  +DDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDID
Sbjct: 12  ERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDID 71

Query: 118 LSTKSPKIRLEAVEPD 134
           LSTKS +I+ +AVEPD
Sbjct: 72  LSTKSSRIQSDAVEPD 87

[Close]
BLAST of Lsi02G021320 vs. TrEMBL
Match: A0A067LA06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           DD++YE+ GGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHL ALADKLGP+LTDIDLS K
Sbjct: 18  DDEEYEEVGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLGALADKLGPSLTDIDLSVK 77

Query: 122 SPKIRLEAVEPD 134
           SP    +A E D
Sbjct: 78  SPHASADAAEQD 89

[Close]
BLAST of Lsi02G021320 vs. TrEMBL
Match: A0A059ASQ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02627 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 56  GVDEGKDDDD---YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPT 115
           G ++ +DDDD   YE+ G GNR LGFMFGNVDNSGDLD DYLDEDAKEHLAALADKLGP+
Sbjct: 8   GSEDSRDDDDEEEYEEGGSGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLAALADKLGPS 67

Query: 116 LTDIDLSTKSPKIRLEAVEPD 134
           L DIDLS KSP+  ++A E D
Sbjct: 68  LADIDLSVKSPRTPVDAAEQD 88

[Close]
BLAST of Lsi02G021320 vs. TrEMBL
Match: A0A0V0J0H0_SOLCH (Putative transcription initiation factor TFIID subunit 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           D+++YE+AGGGNRLLGFMFGNVD SGDLD DYLDEDAKEHLAALADKLGP+LT+IDLS K
Sbjct: 20  DEEEYEEAGGGNRLLGFMFGNVDYSGDLDVDYLDEDAKEHLAALADKLGPSLTEIDLSVK 79

Query: 122 SPKIRLEAVEPD 134
           SP+   +A E D
Sbjct: 80  SPQESADAAEQD 91

[Close]
BLAST of Lsi02G021320 vs. TrEMBL
Match: I1L578_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G215000 PE=4 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 59  EGKDDDD---YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTD 118
           +G+D+DD   YED+G GNR LGFMFGNVDNSGDLD DYLDEDAKEHL+ALADKLGP+LTD
Sbjct: 11  DGRDEDDEEEYEDSGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTD 70

Query: 119 IDLSTKSPKIRLEAVEPD 134
           IDLS KSP+   + VE D
Sbjct: 71  IDLSGKSPQTPPDVVEQD 88

[Close]
BLAST of Lsi02G021320 vs. TAIR10
Match: AT1G32750.1 (AT1G32750.1 HAC13 protein (HAC13))

HSP 1 Score: 91.3 bits (225), Expect = 7.4e-19
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           DDD+YED   G  L GF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +L DI+L  K
Sbjct: 17  DDDEYEDNSRGFNL-GFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSSLPDINLLAK 76

Query: 122 SPKIRLEAVEPD 134
           S +   +  E D
Sbjct: 77  SERTASDPAEQD 87

[Close]
BLAST of Lsi02G021320 vs. NCBI nr
Match: gi|659116422|ref|XP_008458065.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 9.7e-29
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 58  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID 117
           +  +DDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDID
Sbjct: 12  ERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDID 71

Query: 118 LSTKSPKIRLEAVEPD 134
           LSTKS KI+ +AVEPD
Sbjct: 72  LSTKSSKIQSDAVEPD 87

[Close]
BLAST of Lsi02G021320 vs. NCBI nr
Match: gi|778727071|ref|XP_011659205.1| (PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-28
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 58  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID 117
           +  +DDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDID
Sbjct: 12  ERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDID 71

Query: 118 LSTKSPKIRLEAVEPD 134
           LSTKS +I+ +AVEPD
Sbjct: 72  LSTKSSRIQSDAVEPD 87

[Close]
BLAST of Lsi02G021320 vs. NCBI nr
Match: gi|802577806|ref|XP_012069188.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Jatropha curcas])

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-24
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           DD++YE+ GGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHL ALADKLGP+LTDIDLS K
Sbjct: 18  DDEEYEEVGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLGALADKLGPSLTDIDLSVK 77

Query: 122 SPKIRLEAVEPD 134
           SP    +A E D
Sbjct: 78  SPHASADAAEQD 89

[Close]
BLAST of Lsi02G021320 vs. NCBI nr
Match: gi|802577808|ref|XP_012069189.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas])

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-24
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 62  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTK 121
           DD++YE+ GGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHL ALADKLGP+LTDIDLS K
Sbjct: 18  DDEEYEEVGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLGALADKLGPSLTDIDLSVK 77

Query: 122 SPKIRLEAVEPD 134
           SP    +A E D
Sbjct: 78  SPHASADAAEQD 89

[Close]
BLAST of Lsi02G021320 vs. NCBI nr
Match: gi|1009159331|ref|XP_015897754.1| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like [Ziziphus jujuba])

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-24
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 56  GVDEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTD 115
           G DE  D+++YE+AGGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHLAALADKLGP+LTD
Sbjct: 11  GRDED-DEEEYEEAGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLAALADKLGPSLTD 70

Query: 116 IDLSTKSPKIRLEAVE 132
           IDLS KSP+   + V+
Sbjct: 71  IDLSVKSPQTSTDIVD 85

The following BLAST results are available for this feature:
BLAST of Lsi02G021320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF1_ORYSJ1.1e-1958.62Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ... [more]
TAF1_ARATH1.3e-1766.67Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 ... [more]
BLAST of Lsi02G021320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA05_CUCSA1.5e-2885.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1[more]
A0A067LA06_JATCU3.8e-2479.17Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1[more]
A0A059ASQ0_EUCGR8.5e-2471.60Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02627 PE=4 SV=1[more]
A0A0V0J0H0_SOLCH3.2e-2377.78Putative transcription initiation factor TFIID subunit 1-like OS=Solanum chacoen... [more]
I1L578_SOYBN4.2e-2374.36Uncharacterized protein OS=Glycine max GN=GLYMA_09G215000 PE=4 SV=2[more]
BLAST of Lsi02G021320 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32750.17.4e-1966.67 HAC13 protein (HAC13)[more]
BLAST of Lsi02G021320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116422|ref|XP_008458065.1|9.7e-2986.84PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis m... [more]
gi|778727071|ref|XP_011659205.1|2.1e-2885.53PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus][more]
gi|802577806|ref|XP_012069188.1|5.5e-2479.17PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Jatropha ... [more]
gi|802577808|ref|XP_012069189.1|5.5e-2479.17PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha ... [more]
gi|1009159331|ref|XP_015897754.1|7.2e-2477.63PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009067TAF_II_230-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G021320.1Lsi02G021320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009067TAFII-230 TBP-bindingGENE3DG3DSA:1.10.1100.10coord: 68..106
score: 4.
IPR009067TAFII-230 TBP-bindingPFAMPF09247TBP-bindingcoord: 63..106
score: 1.7
IPR009067TAFII-230 TBP-bindingunknownSSF47055TAF(II)230 TBP-binding fragmentcoord: 68..107
score: 1.2
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 64..124
score: 1.4
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 64..124
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G021320CmoCh08G002400Cucurbita moschata (Rifu)cmolsiB809
Lsi02G021320MELO3C021099Melon (DHL92) v3.5.1lsimeB187
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G021320Cucurbita pepo (Zucchini)cpelsiB111
Lsi02G021320Cucurbita pepo (Zucchini)cpelsiB258
Lsi02G021320Wild cucumber (PI 183967)cpilsiB517
Lsi02G021320Cucumber (Chinese Long) v2culsiB503
Lsi02G021320Watermelon (Charleston Gray)lsiwcgB159
Lsi02G021320Watermelon (97103) v1lsiwmB175
Lsi02G021320Cucumber (Gy14) v2cgyblsiB472
Lsi02G021320Melon (DHL92) v3.6.1lsimedB197
Lsi02G021320Silver-seed gourdcarlsiB012
Lsi02G021320Silver-seed gourdcarlsiB074
Lsi02G021320Cucumber (Chinese Long) v3cuclsiB538
Lsi02G021320Watermelon (97103) v2lsiwmbB212
Lsi02G021320Wax gourdlsiwgoB281
Lsi02G021320Cucurbita maxima (Rimu)cmalsiB346
Lsi02G021320Cucurbita maxima (Rimu)cmalsiB822
Lsi02G021320Cucurbita moschata (Rifu)cmolsiB334