CmoCh08G002400 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G002400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription initiation factor TFIID subunit 1-A
LocationCmo_Chr08 : 1448744 .. 1455641 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGGTAAGCCAGTTGATTTAAACCAGTTCTAGGCTCTTTGTTTGAATATATATATATATATTTTTTATTGTTGTTCTTATTATTTTTACGTTCGGAAGTTTACAGTTTGCGGGTCTAAACATCTTTTCTTTCTTATTGGTCTCTTCATCTTAGATATGAGTGAGATTGGTGGAGCAAACTGAAATTATGAATTTTTATTAATGTCAAATCTGGTATTGGATACCTTGGGTTTCTTATTTATAGGCTCAGTATGGAAATGAAGTTAAAATATAAGACAATGAACTCATAGTGAACGATGAAACTCCTTAATTCTAATTTCCACAGTATTGATACTGGCTACTAAGCAACTAGTAACTTAACTCATGGTAATGAAATCAGACACGAGTTACCTACAAAAGTTTCCTCCCTTCTCCCCCAACAGAAGTACTTTTACTGGAGTAGAAACCACTGCCCAGCCCACTAGTAGGATTTAACCATATTTGAGACATTGATTGCACTTGGAATGTGAAGATCTCGTGGTAGTTCAATGACATAAGAATTAGGGGCGACTAAGGATCACAACCACCTTTCGGGGAGCTCCTTCATCTGTCCTTTTGTGATTAGGGGCGTTTCCTGTTGTGGCTTTCCAGGTTTATGTGATTTTGTGGGGCCTTTGTGTTGTGAGGAGTAATAAAATGTTTAGGGTGTTGAGAGACCAAAGGTGATAAGTGCCAACAATGCTGGATTTTGCAAAGCTAGAGGTTCTTCTAGAATCCTTGCAAAACGTTCACAAAGAAAGCTAACTTAACGGATTGATTCCAACCAAGAGCTGGTTAGAAGGGTACATGGAAGTGATCAGTTGTTGGATTCATATAAAAAGGAGGAGGTGTGGTCCCTTGTTAGATCCATACTTTCCTCTAGGCTTTGGCTCTAAGGCTTTTTGTAATCCTATAGGAACTTATTTTGGAGGATTGAAGCCCAAGTTTGGCTCTTTTTGGTGTGGACTTTCTTTTTTTATGCCCCTTATATTTTTTCATTTTTTCTCAATAAAAAATTTCGTTTCTTGTTAAAAAAGGAAGCAAAGTTAATACCTTGGATTGTATCATGAGGAAGTCTTTTGTGCTGATTGGGCTTCAATGCTATATCCTTTGTAGGATGGCATTTGAGGATATTGATCACACTCTTGGGAGTTGCCAATATTCCTCTCTTGTCTGGAGTCACTTTTTCATAGTGTTAGGTTCTTATTGGGTTCCACCTATTAAGTGTAGGTCCATGGTAAAAAAAGTTTCTTCTTCACCCTACCCTTTTGTGTTATGGGTCTCTTTTTGTGGCCTGCTGATTTTGTGGGGTCTTGGTTAGAGAGAAGCAGTAAGATTTTTAAGGAGATTGAGAGATTGAGCGAGGAGGTGCTGTCTCTTGTGAGGTTTCATGTTTCTCTTTAGGCTTCAATGCATAAGGACTTTTGTAATTATCCTTTAGGTCCCATCTTGTTAGTTTGGAGTCCCTCTGTTCTAGTTTGTCTCCTTTTGTTCAAACTGCCTTATTGTTTGCCCTTTGTATTATTTTCTTTCTTTATGCTCTTTGCATTCTCAATCAAAGCATGGTTTTTGATTAAAGAAAATTTAGGAAGAATAATTTCAATTTGCATAGTTACGTTATTAACTCTTATCAGTCATTCAATCACAGTGACATTGTTAACTTTTGCAATTTTAAATTCATTTTGAAAACTAAAAATAAAAAACTGTGTATTATTGTGGATCATGAGTAGAAAACTGTGTTTATGTACTTATGATATTTTGACTGCAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGTAATATTATTGCTCCTAGTTCTAGTGGCATTTTTGTAGAACTAGATCTGTTGGAGGACAGTGTGCCAGAAAGATGTAAGCTATGGACTCATTCTATTAGAAGATTGCTGTACCAAAATACTGGTTTTGGCACCATAGATTTTGCAACTAGACTTGTTATCTTCCAAATATGATCTGTTGAAGTCTGAAAATTCTTAAGAAAACCTTAACTTGTTACACTTGTAACAATTAGTTCTTTCAGTAATCTGACCTTTCATCTTATTTGTCTGACACTTAATTTTCTCATTAATATCATATTATGGATGCGTTGGAAATGATCTTGTGTTCTAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAATTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGTTCGTATACCATCTCTCATTGCTCTTTAATAACATTCAACTACTGCATCTGTATCTTTCAGAGTTTGATAGTTTCTTTTCCCCCTTCTATCTTTTTCTTTGATGCCTGCAATTTTTCAAATTTTTCAGTTGTCGACGAAATCACCAAAAATACCATCTGATGCTATTGAACCAGGTGAAGTTGTATTTATAAATTTACCTAGTAGTCTTCCGAGTTTTATTTTTATGTTCGATACCTTTATCTTCAAATACATTTTCACGAGACTTGCTAAAAATATTGTGTGAACTGTGCTTTTTTCTGATCTTAATAATGAAAGCTACTTGATAAATATTATTGTTAGCTGGGTGCTTCCGCCATTCTACAGACTGATGACTTATAATTTGTTCAGTTTTAGGGCTTTCTAACTGAACCTTGGGAGTTCGTTTGTTTATTTTTTAAATTGGAATTGGGATCATAATCTTAGGTGTTTTTTTAGTGCGTATTTATTGTTAGAGAGGTTGATATACTGATGAGGTCGTATAGGTATGGTTATGTTGTAGGTTCCTTGGTTATTCCTCCGGTATCCATGAAACATACCACCTTTATTTTTTAGTAATAGCCTTCTCAAAGTTTCATTTAATTTCCTTTTCATTTATATCAAAATCATGATTATCATATATATATATATAGGAAACAAATTTTAATGATGTATGAAATGTACAAAAGTGGGGCGGAAGTTTGAGCGAAAGTGGGTACAAAAGATTTTCCAATTGGACAAAAGTGAAGATTACCAATAAGAGAAAGAGGAGGTGAATTTTGACGAAGACAGCTAAAAAGGAAATTTGTTGAAAAAAAGCTGTCAAAGAATCTTCCTTCCTCGTTTAAAAGTTGATGATTCCATTCTATCCATGTAATCCACAAGAAGGCTCAAATTAGTTGAGGAGGCTGTTCAGATCAATGGGGGAGAGACGTGGACTAGTGGAAGGTGGAGAGTAACTCTTTTCAAAATCTGTCTGCATCATTACGAGTAAGAAACTGTGCTTCTGAAAGCAAGAGCAATCTTGTAGAGAAGTTCCCTTTGGAGTCAATTTTTTAGAACCATTCGTCTTTGGGATGTGTTAAATGCACAACTATCCATACGTCAAAGTGTCTAGGACTAAATTGTTACAAACTATAGTATAGAGATTAAAGTATTATGAAAGTTAAAGGGCCAAAAGTGTTTTTTGACCTATACAGTTGGTTCAAAAATACCCTTACAGATAGTTTTGGATGAATACCCTTAATATTTTCTTTCGAAAATGCCCTTGAATTTTCAAAATGGTTTCAAAAATACCCTTTTAATATTTAAAAATGTTCAAAAAATATCCTTGAATTTTCAAAAGTTTGAGTAATACTCTAAATTTTTTTTAAAACCTTCAAAAATACTCTTACCATTTGTACCTCGTTTAAAAAATACTCATGAATTTTCAAAAATAACATTAAAAAGTTTAGAGATAATCTATGAGGTGTTGATAGACAGTTTTCGTCTATATATCGACAGTAATAATTTTTTTATAAAGGTAAAGAGTGTTAATGCTATTTTTAAAATTTCATGGGTATTTTTTAAACATAGTACTAATGGTAATGATATTCTTAAACTCTTTAAGGGTATTAATGAAACTTTTTAAAGTTCAAGGGTGTTTTTGAAACACTATTAAAAGTTCAAGGGTAATTTTGAAATACAGTACTAATGGTTTCCATCCAAAACTAACGGAAATGGTATTTTTGAGACTTTTTTGAAAGTTGAAGGGTATTATTGAAACTTTTGAAAGTTTAGCGGTATTTTCGAGACAAAATACAAAGTTTAGGGTTATTATATTTGTTCATACTAACCTTATGCCATAGTGAATGGGCCTCTAAGGGGAAGCGCGACAACCCTTTAGCTAGATGGGCATTATTATGAGTTCAACTTCCTAAGAAAACATTAATTATTTGATACCTGCTATAAAACACGGACACATGCATAATATAATGGCAAAGTGTCGATGTCGGACACACGTACTCTCGAACATGCTTTCTGCACGTGTCCAATACACTATATTGTGTGTCCATTTTTTTTTGTATTTATCATTTTTGGACACACGAGGGCACACTCTCAGACACTTGGTTGGCATGAACACATGTTTTGGCAATCGAGGTGCTTGACCCTCTAATCTTGAAGATTTTTTTTTTTTTTTTAAAGAAGAGTTGAATAAAAAGATGAAGAGTTTTTAGAAGGAGACGAAAAGACGAAGGAGAAGAAGAATAGAAAAAAAGAAAAGAAGGAAAAAGTTGAAACGTGAAAAGAACCCAGGAGAAAAAGAATAGAAAAAAAAAAAAAAGAATTAAATGGGAGAAGTAGAAAAGACATGCGCAGAGGTTGAGAGTGGAAAAAAAAAAAAAAAATAGAATTGAAGAACAGACGTGCGCGGAGGAGAAGAAGAATAGGTTGAAAAAAGAAAAAAACAATTGGAAGAAGAATAGATGTACACAGAGGAGAAGAACAGAAGAAGGAAAGAAGAAAATACATGAAGAAAAGTTGAGAAGCATCAAGTGCTTGTTGCATGAGCAACTACTAGATGCCAATATACTTCCTCATAGGATCGTGTCTAGAAAAACTAAATAGGGCTGGTTGAGCCAAATGGCAGTTTACTCCAATAAATAAAAGTGTCTGGCATGCTTAATAATCAATACTTAGATCACCCTTCTTTTAGTACCTTAGATTTCTTTTCTAGAAAATTTATCTCTATATCCCTTCTTTCTCTAACCTAGTTTAGTTATTTAAAAAAAAAGATTTTGTAATATTTTATGCGTTTAGAATGGAGTATGTTATTATTATTATTTGCCTATGATGTATCCAACATGTCGTGCCCTACTTTCTTAGAAATTGACATGTCACTGTGTTTGTGCTTAGGATATCAATATGGTGGTTCAGTAAGTAAGAATATCCTCATTTAAGCACGATGCATATTTAGTTCTTCCAAATGTAGGAAATGATTCTTGAAAACTAGGAGTCTTTGGATCAAGCTTGTTAATGGTTCTTGACTGGAACGGTTATTTCTGTGCTTGCTGGAAAATCCTTCAATTGATTTGCGAATAAGAGAGTGGTTTGGGGTGCCACAAATTTTAGGGCTATGTTTTGGTTCTTGAGAATGGAAAGATTATATTATAGCTAAACTGCCAAGGGTCCTTGGATGATATTTATGTGTGTGTATGTTTAGTCTTATTTAAAAAAATCAAAAGAAAAGAAGTATTCAAGTCTTACCTTGAATGTTTCATCTTGATGATGTATACTTTATATTTTTGTTCATTCTGGTTTCTTATGCAAGAATTAAGAAATACTTTTTAAGCTTCTTGTTAGATAGTTCCAATTCGCTAGGAGAAATGATTTTTCTAGGCAATCCTGATGTAACCTAGGATCTAGTAGAAGAACATTTGAGACTCTTTACTCAACACCGAACCCCATTATATAGGCTATCAACTAACTGAACCAAATAGAAACTATACTAATTAAAAAATTAATAACAAGCTACCTACCTAATAAAATTAGCCGCAAACTAGGGCAACTGAACTCTTAAATCCTTTCTTTTAGCTTTTCAACCGTTGATGAAAAGTTCTATTTCTTGTTTATAAAAAATAAAACCACTAATAAGTAGAACAAAAGGGGAATAAAAGTCCCCGCTCACACTATATCACATCCATAGGGAGTACAGTTCAAGCATTATTTTAAGTACACAATTCATCTGACCACTGCCCTCATCATCTCACTTTCTTTGACTGGACTGGTGGGGGGTATTTGTGTTCTCAGATTATGATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATATTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCGTTGTAGCTCCAACCATCCATGCATCAGGTATCTGTCACCTTTCTCTACATTATTATCACTATAATTTCACTTACTACTAAAGGACCGTCTCATATAGCTAGAAATTTTCTATTTGTGTTTGTTTTTCCTGTCATGATGTGGTTTGTTGGATATACAACTTTCTTATATTACTGAATTGATTTTGAGTTGTAATCACTAGTTTTACTTTTACAATCATCATGTTCGATACCTTACCTTTTTATTGGTGAGAGCTTTTCTGTACATTCCTCATCTTTGTGTACACTTTAAGATGCCTTTTATTCCTGCCTAAAATTTTATTCCTAATGGTAGAGAGGAAATTTTAGTAGAGAGGAAATTTTATGGCGTACATATGGGAATTAAACGTTTTTTTAGTGAGCTTTTCTGGAATATAGTCAGTTTAGTATTTTGAAGTTGGGTTATGTTTCTTTTCTCGAATAGTTAGTTAG

mRNA sequence

ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAATTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGCAATCCTGATGGAGTACAGTTCAAGCATTATTTTAAATTATGATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATATTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCGTTGTAGCTCCAACCATCCATGCATCAGTTAGTTAG

Coding sequence (CDS)

ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGTGGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAATTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGCAATCCTGATGGAGTACAGTTCAAGCATTATTTTAAATTATGATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATATTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCGTTGTAGCTCCAACCATCCATGCATCAGTTAGTTAG
Homology
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BLAST of CmoCh08G002400 vs. Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.7e-42
Identity = 94/161 (58.39%), Postives = 112/161 (69.57%), Query Frame = 1 

Query: 14  DEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVR 73
           D+DD+DY++ GGGN  LGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DID+ 
Sbjct: 19  DDDDEDYDEPGGGNHFLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDL- 78

Query: 74  IFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIE 133
                              +   A   + S     +YDAKAEDA+DYEDIDEEYDGPE+E
Sbjct: 79  -------------------IKPSAAPTDPSEQ---DYDAKAEDAVDYEDIDEEYDGPEVE 138

Query: 134 AAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIE 175
           AA EEDHLL KK+YFS+     ++    SVFD+E+YDED E
Sbjct: 139 AATEEDHLLSKKDYFSSNAVYASVNSKVSVFDEENYDEDEE 156

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BLAST of CmoCh08G002400 vs. Swiss-Prot
Match: TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-39
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 1 

Query: 7   GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPT 66
           G   +   +DDD+YED   G  L GF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +
Sbjct: 8   GSHNETSSDDDDEYEDNSRGFNL-GFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSS 67

Query: 67  LTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEE 126
           L DI              +L+  S   A        S     +YD KAEDA+DYEDIDEE
Sbjct: 68  LPDI--------------NLLAKSERTA--------SDPAEQDYDRKAEDAVDYEDIDEE 127

Query: 127 YDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 181
           YDGPE++   EEDHLLPKKEYFS  V+L +L+  ASVFDDEDYDE+ E+  E A
Sbjct: 128 YDGPEVQVVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQA 158

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BLAST of CmoCh08G002400 vs. Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1B PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-12
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 118 IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEK 177
           +DY   DEEYDGPE++   EEDHLLPK+EY SA  +L  L   ASVFDDEDYDE    EK
Sbjct: 5   VDYGSNDEEYDGPELQVVTEEDHLLPKREYLSAAFALSGLNSRASVFDDEDYDEQGGQEK 64

Query: 178 VHEVANRS 184
            H    +S
Sbjct: 65  EHVPVEKS 72

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BLAST of CmoCh08G002400 vs. TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.3e-65
Identity = 142/192 (73.96%), Postives = 149/192 (77.60%), Query Frame = 1 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1   MGGETYGDSPDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   SS + S A+  +        YDAKAEDA+DY
Sbjct: 61  DKLGPTLTDID--------------LSTKSSRIQSDAVEPD--------YDAKAEDAVDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLP++EYFSAEVSL TLEPTASVFDDEDYDED E V +V 
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPRREYFSAEVSLSTLEPTASVFDDEDYDEDFENVPDVV 170

Query: 181 NRSVVAPTIHAS 193
           N SV    IHAS
Sbjct: 181 NNSVEPQIIHAS 170

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BLAST of CmoCh08G002400 vs. TrEMBL
Match: A0A067LA06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 120/205 (58.54%), Postives = 141/205 (68.78%), Query Frame = 1 

Query: 1   MGG-ETYGDSQDERDEDDDD-YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAA 60
           MGG E+ G SQD RDEDDD+ YE+ GGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHL A
Sbjct: 1   MGGYESGGASQDARDEDDDEEYEEVGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLGA 60

Query: 61  LADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAI 120
           LADKLGP+LTDID+ +               S + ++ A   +Y        DAKAEDA+
Sbjct: 61  LADKLGPSLTDIDLSVK--------------SPHASADAAEQDY--------DAKAEDAV 120

Query: 121 DYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED------ 180
           DYEDIDE+Y+GPEI+AA EED LLPKKEYFS+EVSL TLE   SVFDDE+YDE+      
Sbjct: 121 DYEDIDEQYEGPEIQAASEEDFLLPKKEYFSSEVSLATLEQKTSVFDDENYDEEEETERE 180

Query: 181 ---IEKVHEVANRSVVAPTIHASVS 195
              +EK  EV ++  VA  +    S
Sbjct: 181 DVVVEKKLEVQDQQDVAVVLAGETS 183

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BLAST of CmoCh08G002400 vs. TrEMBL
Match: A0A067DKN5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0007921mg PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.7e-46
Identity = 115/186 (61.83%), Postives = 136/186 (73.12%), Query Frame = 1 

Query: 1   MGGETYGD-SQDERDEDDDD-YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAA 60
           MGG   G  S+D RDEDD++ YED  GGNRLLGFMFGNVD +GDLD DYLDEDAKEHLAA
Sbjct: 1   MGGYDSGSASKDGRDEDDEEEYEDVSGGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAA 60

Query: 61  LADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAI 120
           +ADKLGP+LTDIDV      N    F L   S  + S         ++  +YD KAEDA+
Sbjct: 61  VADKLGPSLTDIDV-----WNSQSCFQLFC-SYCLLSVNSPQPPVDAVEQDYDKKAEDAV 120

Query: 121 DYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEKV 180
           DYEDIDE+Y+GPEI+ A EED+LLPKKEYF+AEVSL  L+PTAS FDDE+YDED  +EK 
Sbjct: 121 DYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDDENYDEDEELEKE 180

Query: 181 HEVANR 183
           HE  ++
Sbjct: 181 HEEVDK 180

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BLAST of CmoCh08G002400 vs. TrEMBL
Match: W9QXK0_9ROSA (Transcription initiation factor TFIID subunit 1-A OS=Morus notabilis GN=L484_011395 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-45
Identity = 116/210 (55.24%), Postives = 141/210 (67.14%), Query Frame = 1 

Query: 1   MGGETYGDSQDERDEDDD-DYEDAGGGNRLLGFMFGNVDNSGDLDADYLDE--------- 60
           MG  +   SQD RDEDD+ DY++ GG NRLLGFMFGNVDNSGDLD DYLDE         
Sbjct: 39  MGYGSDSGSQDGRDEDDEEDYDEGGGSNRLLGFMFGNVDNSGDLDVDYLDEVSDLDAKIL 98

Query: 61  -------DAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYS 120
                  DAKEHL+ALADKLG +LTDID+          S      S+ V   A L  + 
Sbjct: 99  VYGYAFQDAKEHLSALADKLGSSLTDIDL----------SIKSPQISADVVEQAFLDRFH 158

Query: 121 SSIIL-NYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTAS 180
              ++ +YD KAEDA+DYEDIDE+Y+GPEI+AA EED+LLPKKE+FS E+SL  L+PTAS
Sbjct: 159 FVALMPDYDEKAEDAVDYEDIDEQYEGPEIQAASEEDYLLPKKEFFSTELSLAALKPTAS 218

Query: 181 VFDDEDYDEDIEKVHEVANRSVVAPTIHAS 193
           VFDDE+YDE+ E+ +EV   +V A TI  S
Sbjct: 219 VFDDENYDEETEQENEVVENTVDAQTIIVS 238

[Close]
BLAST of CmoCh08G002400 vs. TrEMBL
Match: B9S9F7_RICCO (Transcription initiation factor tfiid, putative OS=Ricinus communis GN=RCOM_0884950 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 108/173 (62.43%), Postives = 128/173 (73.99%), Query Frame = 1 

Query: 4   ETYGDSQDERDEDDDD-YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADK 63
           E+   SQD RDEDD++ YE+ GGG+RLLGFMFGNVDNSGDLD DYLDEDAKEHLAALADK
Sbjct: 5   ESGSASQDCRDEDDEEEYEEGGGGSRLLGFMFGNVDNSGDLDVDYLDEDAKEHLAALADK 64

Query: 64  LGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYED 123
           LG +LTDIDV               L S  + + A   +Y        D KAE+A+DYED
Sbjct: 65  LGSSLTDIDV---------------LKSPQITADAAEQDY--------DEKAENAVDYED 124

Query: 124 IDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEK 176
            DE+Y+GPEI+AA EED+LLPKKEYFS+EVSL TL+PT SVFDDE+YDE+ E+
Sbjct: 125 FDEQYEGPEIQAASEEDYLLPKKEYFSSEVSLSTLKPTTSVFDDENYDEEEEE 154

[Close]
BLAST of CmoCh08G002400 vs. TAIR10
Match: AT1G32750.1 (AT1G32750.1 HAC13 protein (HAC13))

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-40
Identity = 98/174 (56.32%), Postives = 115/174 (66.09%), Query Frame = 1 

Query: 7   GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPT 66
           G   +   +DDD+YED   G  L GF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +
Sbjct: 8   GSHNETSSDDDDEYEDNSRGFNL-GFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSS 67

Query: 67  LTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDYEDIDEE 126
           L DI              +L+  S   A        S     +YD KAEDA+DYEDIDEE
Sbjct: 68  LPDI--------------NLLAKSERTA--------SDPAEQDYDRKAEDAVDYEDIDEE 127

Query: 127 YDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 181
           YDGPE++   EEDHLLPKKEYFS  V+L +L+  ASVFDDEDYDE+ E+  E A
Sbjct: 128 YDGPEVQVVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQA 158

[Close]
BLAST of CmoCh08G002400 vs. TAIR10
Match: AT3G19040.1 (AT3G19040.1 histone acetyltransferase of the TAFII250 family 2)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-13
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 118 IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEK 177
           +DY   DEEYDGPE++   EEDHLLPK+EY SA  +L  L   ASVFDDEDYDE    EK
Sbjct: 5   VDYGSNDEEYDGPELQVVTEEDHLLPKREYLSAAFALSGLNSRASVFDDEDYDEQGGQEK 64

Query: 178 VHEVANRS 184
            H    +S
Sbjct: 65  EHVPVEKS 72

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: gi|778727071|ref|XP_011659205.1| (PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 6.2e-65
Identity = 142/192 (73.96%), Postives = 149/192 (77.60%), Query Frame = 1 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1   MGGETYGDSPDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   SS + S A+  +        YDAKAEDA+DY
Sbjct: 61  DKLGPTLTDID--------------LSTKSSRIQSDAVEPD--------YDAKAEDAVDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEAAGEEDHLLP++EYFSAEVSL TLEPTASVFDDEDYDED E V +V 
Sbjct: 121 EDIDEEYDGPEIEAAGEEDHLLPRREYFSAEVSLSTLEPTASVFDDEDYDEDFENVPDVV 170

Query: 181 NRSVVAPTIHAS 193
           N SV    IHAS
Sbjct: 181 NNSVEPQIIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: gi|659116422|ref|XP_008458065.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 2.4e-64
Identity = 140/192 (72.92%), Postives = 148/192 (77.08%), Query Frame = 1 

Query: 1   MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALA 60
           MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALA
Sbjct: 1   MGGETYGDSPDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALA 60

Query: 61  DKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAIDY 120
           DKLGPTLTDID              L   SS + S A+  +        YDAKAEDA+DY
Sbjct: 61  DKLGPTLTDID--------------LSTKSSKIQSDAVEPD--------YDAKAEDAVDY 120

Query: 121 EDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA 180
           EDIDEEYDGPEIEA GEEDHLLP++EYFSAEVSL TLEPTA VFDDEDYDED EKV ++ 
Sbjct: 121 EDIDEEYDGPEIEAVGEEDHLLPRREYFSAEVSLATLEPTAPVFDDEDYDEDFEKVPDIV 170

Query: 181 NRSVVAPTIHAS 193
           N SV    IHAS
Sbjct: 181 NNSVEPQIIHAS 170

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: gi|802577806|ref|XP_012069188.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Jatropha curcas])

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 120/205 (58.54%), Postives = 141/205 (68.78%), Query Frame = 1 

Query: 1   MGG-ETYGDSQDERDEDDDD-YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAA 60
           MGG E+ G SQD RDEDDD+ YE+ GGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHL A
Sbjct: 1   MGGYESGGASQDARDEDDDEEYEEVGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLGA 60

Query: 61  LADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAI 120
           LADKLGP+LTDID+ +               S + ++ A   +Y        DAKAEDA+
Sbjct: 61  LADKLGPSLTDIDLSVK--------------SPHASADAAEQDY--------DAKAEDAV 120

Query: 121 DYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED------ 180
           DYEDIDE+Y+GPEI+AA EED LLPKKEYFS+EVSL TLE   SVFDDE+YDE+      
Sbjct: 121 DYEDIDEQYEGPEIQAASEEDFLLPKKEYFSSEVSLATLEQKTSVFDDENYDEEEETERE 180

Query: 181 ---IEKVHEVANRSVVAPTIHASVS 195
              +EK  EV ++  VA  +    S
Sbjct: 181 DVVVEKKLEVQDQQDVAVVLAGETS 183

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: gi|802577808|ref|XP_012069189.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas])

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 120/205 (58.54%), Postives = 141/205 (68.78%), Query Frame = 1 

Query: 1   MGG-ETYGDSQDERDEDDDD-YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAA 60
           MGG E+ G SQD RDEDDD+ YE+ GGGNRLLGFMFGNVDNSGDLD DYLDEDAKEHL A
Sbjct: 1   MGGYESGGASQDARDEDDDEEYEEVGGGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLGA 60

Query: 61  LADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAI 120
           LADKLGP+LTDID+ +               S + ++ A   +Y        DAKAEDA+
Sbjct: 61  LADKLGPSLTDIDLSVK--------------SPHASADAAEQDY--------DAKAEDAV 120

Query: 121 DYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED------ 180
           DYEDIDE+Y+GPEI+AA EED LLPKKEYFS+EVSL TLE   SVFDDE+YDE+      
Sbjct: 121 DYEDIDEQYEGPEIQAASEEDFLLPKKEYFSSEVSLATLEQKTSVFDDENYDEEEETERE 180

Query: 181 ---IEKVHEVANRSVVAPTIHASVS 195
              +EK  EV ++  VA  +    S
Sbjct: 181 DVVVEKKLEVQDQQDVAVVLAGETS 183

[Close]
BLAST of CmoCh08G002400 vs. NCBI nr
Match: gi|694384591|ref|XP_009368185.1| (PREDICTED: transcription initiation factor TFIID subunit 1-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 192.6 bits (488), Expect = 6.5e-46
Identity = 109/190 (57.37%), Postives = 137/190 (72.11%), Query Frame = 1 

Query: 1   MGGETYGDSQDERDEDDDD-YEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAAL 60
           MGG++Y  SQD RDEDD++ YED G G+R LGFMFGNV++SG LDADYLDEDAKEHLAAL
Sbjct: 1   MGGDSYDGSQDGRDEDDEEEYEDVGRGSRFLGFMFGNVNDSGGLDADYLDEDAKEHLAAL 60

Query: 61  ADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAKAEDAID 120
           ADKLGP+LT I++ +                S   S   + E       +Y+ KAE+A++
Sbjct: 61  ADKLGPSLTGINLSV---------------KSPQTSTDAVEE-------DYEEKAENAVN 120

Query: 121 YEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEV 180
           Y DIDE+++GPEI+AA EEDHLLP+KEYFSA+ SL TLEPT S+FDDEDYDE+IE+ HEV
Sbjct: 121 YFDIDEDFEGPEIQAATEEDHLLPRKEYFSAQGSLATLEPTNSMFDDEDYDEEIEQEHEV 168

Query: 181 ANRSVVAPTI 190
              ++   TI
Sbjct: 181 VENNIDVQTI 168

The following BLAST results are available for this feature:
BLAST of CmoCh08G002400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF1_ORYSJ9.7e-4258.39Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ... [more]
TAF1_ARATH3.4e-3956.32Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 ... [more]
TAF1B_ARATH8.0e-1257.35Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1... [more]
BLAST of CmoCh08G002400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA05_CUCSA4.3e-6573.96Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1[more]
A0A067LA06_JATCU1.1e-4758.54Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1[more]
A0A067DKN5_CITSI7.7e-4661.83Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0007921mg PE=4 ... [more]
W9QXK0_9ROSA5.0e-4555.24Transcription initiation factor TFIID subunit 1-A OS=Morus notabilis GN=L484_011... [more]
B9S9F7_RICCO1.1e-4462.43Transcription initiation factor tfiid, putative OS=Ricinus communis GN=RCOM_0884... [more]
BLAST of CmoCh08G002400 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32750.11.9e-4056.32 HAC13 protein (HAC13)[more]
AT3G19040.14.5e-1357.35 histone acetyltransferase of the TAFII250 family 2[more]
BLAST of CmoCh08G002400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778727071|ref|XP_011659205.1|6.2e-6573.96PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus][more]
gi|659116422|ref|XP_008458065.1|2.4e-6472.92PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis m... [more]
gi|802577806|ref|XP_012069188.1|1.5e-4758.54PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Jatropha ... [more]
gi|802577808|ref|XP_012069189.1|1.5e-4758.54PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha ... [more]
gi|694384591|ref|XP_009368185.1|6.5e-4657.37PREDICTED: transcription initiation factor TFIID subunit 1-like isoform X1 [Pyru... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009067TAF_II_230-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G002400.1CmoCh08G002400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009067TAFII-230 TBP-bindingGENE3DG3DSA:1.10.1100.10coord: 22..60
score: 4.
IPR009067TAFII-230 TBP-bindingPFAMPF09247TBP-bindingcoord: 17..60
score: 2.0
IPR009067TAFII-230 TBP-bindingunknownSSF47055TAF(II)230 TBP-binding fragmentcoord: 22..61
score: 1.4
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 18..174
score: 1.2
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 18..174
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G002400MELO3C021099Melon (DHL92) v3.5.1cmomeB810
CmoCh08G002400Lsi02G021320Bottle gourd (USVL1VR-Ls)cmolsiB809
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G002400Cucumber (Gy14) v2cgybcmoB955
CmoCh08G002400Melon (DHL92) v3.6.1cmomedB913
CmoCh08G002400Silver-seed gourdcarcmoB0022
CmoCh08G002400Silver-seed gourdcarcmoB0119
CmoCh08G002400Cucumber (Chinese Long) v3cmocucB1066
CmoCh08G002400Watermelon (97103) v2cmowmbB916
CmoCh08G002400Wax gourdcmowgoB1128
CmoCh08G002400Cucurbita moschata (Rifu)cmocmoB311
CmoCh08G002400Watermelon (97103) v1cmowmB843
CmoCh08G002400Cucurbita maxima (Rimu)cmacmoB366
CmoCh08G002400Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G002400Wild cucumber (PI 183967)cmocpiB913
CmoCh08G002400Cucumber (Chinese Long) v2cmocuB900
CmoCh08G002400Watermelon (Charleston Gray)cmowcgB785
CmoCh08G002400Cucurbita pepo (Zucchini)cmocpeB834
CmoCh08G002400Cucurbita pepo (Zucchini)cmocpeB851