Lsi02G017210 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G017210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChlorophyll a-b binding 6A, chloroplastic
Locationchr02 : 22918251 .. 22919547 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCATCTAAGTCTAAATTCGCCGCCGCTGTCCCGATTTCCGGCGTCGCCGTCAATGCATCATCTCGATTTTCCATGTCCGCCGAGTGGATGCCTGGCCAGCCCCGTCCCCCCTACCTCGACGGCTCAGCCCCCGGGTATTGAATTTTGAAATGCCTCTTGTTCAATCTCGTGGGGTTTGTTAATGTAGGATGGTCATTGCTCTCTAGTTGTTTGATGAAATGTCTAAGAGAGTCCTGATACTCTTTTTGGGTGCTTTGATTTATCCTTGACTCGATGAAATCGTTATGTGTGTGAATCTAAACTTAAATTAAAGTTCCTCTTGAAACAAGAAAGGTTGATTGATTTACTATTAGTTATTAGCTTTAGTTTTTGGGTAAGTTATGAGTTAGAATTGATTAGATGTTTGAGATCTGTGGTCATGTTCAACAGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGTTTCCCAAATTCAGTTGCTTGATTCTGAGATGATGGGGCTTTTCTTTTTCATTTTCCAATGCTCTTCCTTCTGTTTTTTCAGCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACTTACTTAGGGCAACCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGCGGTGCTTTTGACCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAGAACGGTAAGTGCTTTCATTTCTTTCATGTTAATTAGAGAAGATTAAGGCTTTTGCCATCATTCAGATTTAGGCTTTGAGGCTACTGTGTTCCTTATTTGAACCAACATACAACTTGATTACTTTTTACTCAAAGGGGGAAATATTTGATACAAATTACCAATTACTTATGGTTTGTAGGTCGATTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGATATTATCATTCCCAGATCGGTTTCGCCTTGA

mRNA sequence

ATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCATCTAAGTCTAAATTCGCCGCCGCTGTCCCGATTTCCGGCGTCGCCGTCAATGCATCATCTCGATTTTCCATGTCCGCCGAGTGGATGCCTGGCCAGCCCCGTCCCCCCTACCTCGACGGCTCAGCCCCCGGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACTTACTTAGGGCAACCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGCGGTGCTTTTGACCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAGAACGGTCGATTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGATATTATCATTCCCAGATCGGTTTCGCCTTGA

Coding sequence (CDS)

ATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCATCTAAGTCTAAATTCGCCGCCGCTGTCCCGATTTCCGGCGTCGCCGTCAATGCATCATCTCGATTTTCCATGTCCGCCGAGTGGATGCCTGGCCAGCCCCGTCCCCCCTACCTCGACGGCTCAGCCCCCGGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACTTACTTAGGGCAACCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGCGGTGCTTTTGACCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAGAACGGTCGATTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGATATTATCATTCCCAGATCGGTTTCGCCTTGA

Protein sequence

MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSVSP
Homology
[Close]
BLAST of Lsi02G017210 vs. Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.3e-120
Identity = 211/246 (85.77%), Postives = 221/246 (89.84%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGI     PS LSS+KSKFAAA+P+   A N  SRFSMSA+WMPGQPRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFD L LGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP K +E KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 240

Query: 241 PRSVSP 247
           P+ + P
Sbjct: 241 PKGIFP 245

[Close]
BLAST of Lsi02G017210 vs. Swiss-Prot
Match: CAB6_ARATH (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 6.8e-117
Identity = 206/242 (85.12%), Postives = 218/242 (90.08%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]
BLAST of Lsi02G017210 vs. Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.0e-104
Identity = 181/243 (74.49%), Postives = 202/243 (83.13%), Query Frame = 1 

Query: 2   ASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLD 61
           +S+ L SC  +    PS+L+ S     + +P    A   S R +MSAEW PGQPRP +LD
Sbjct: 3   SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATT-SGRVTMSAEWFPGQPRPAHLD 62

Query: 62  GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 121
           GS+PGDFGFDPL L  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWA
Sbjct: 63  GSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWA 122

Query: 122 AIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 181
           A+P GQATYLG PVPWG LPTIL IEFLAIAF E QR+MEKDPEKKKYPGGAFDPLG+SK
Sbjct: 123 ALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSK 182

Query: 182 DPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 241
           DP K +E K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 183 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 242

Query: 242 RSV 245
           R++
Sbjct: 243 RNI 242

[Close]
BLAST of Lsi02G017210 vs. Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-37
Identity = 103/282 (36.52%), Postives = 141/282 (50.00%), Query Frame = 1 

Query: 3   SNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAE---WMPGQPRPPY 62
           S    +  I  T   S +SS+ S+F A         +     ++ ++   W PG   P Y
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEY 64

Query: 63  LDGSAPGDFGFDPLRLGEVPE--------------------------------------- 122
           LDGS  GD+GFDP  LG+  E                                       
Sbjct: 65  LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPY 124

Query: 123 ----NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVP 182
                L+RF+E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P
Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLP 184

Query: 183 WGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIK 238
           + ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K  + ++ EIK
Sbjct: 185 F-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIK 244

[Close]
BLAST of Lsi02G017210 vs. Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.1e-37
Identity = 95/236 (40.25%), Postives = 127/236 (53.81%), Query Frame = 1 

Query: 20  LSSSKSKFAAAVPISGVAVNASSRFSMSA---EWMPGQPRPPYLDGSAPGDFGFDPLRLG 79
           L  S  K    V    V  + S+ F + A   EW+PG   P YL GS PGD GFDPL L 
Sbjct: 23  LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLA 82

Query: 80  EVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVP 139
           E PENL  F ++EL++ RWAML V G+L+PE       +   +W A   G+  Y      
Sbjct: 83  EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEY------ 142

Query: 140 WGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGY 199
           + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL +
Sbjct: 143 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNF 202

Query: 200 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 236
           +       E K KEI NGRLA+LAF+GF +Q +   G GP +NL  H++DPWHN I
Sbjct: 203 A----PTLEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 245

[Close]
BLAST of Lsi02G017210 vs. TrEMBL
Match: A0A0A0KNM4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 8.3e-138
Identity = 240/246 (97.56%), Postives = 243/246 (98.78%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           PR++SP
Sbjct: 241 PRTISP 246

[Close]
BLAST of Lsi02G017210 vs. TrEMBL
Match: W9RZD3_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_013420 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 6.4e-130
Identity = 228/246 (92.68%), Postives = 236/246 (95.93%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MA+NTLMSCGIA TAFPSVLSSSKSKFA +  + GV VNASSRF+MSA+WMPGQPRPPYL
Sbjct: 1   MAANTLMSCGIA-TAFPSVLSSSKSKFATSGQLPGVGVNASSRFTMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEK KEYKVKEIKNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKFKEYKVKEIKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           PRS+ P
Sbjct: 241 PRSILP 245

[Close]
BLAST of Lsi02G017210 vs. TrEMBL
Match: M5VZM0_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa010511mg PE=3 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 2.4e-129
Identity = 226/247 (91.50%), Postives = 236/247 (95.55%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA +AV +  V  NASSRFSMSA+WMPGQPRPPY
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFATSAVQLPSVGANASSRFSMSADWMPGQPRPPY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+K +EYKVKEIKNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGD+I
Sbjct: 181 SKDPKKFEEYKVKEIKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDVI 240

Query: 241 IPRSVSP 247
           IP+ + P
Sbjct: 241 IPKGILP 247

[Close]
BLAST of Lsi02G017210 vs. TrEMBL
Match: A0A067JPE2_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_23938 PE=3 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 7.8e-128
Identity = 223/246 (90.65%), Postives = 234/246 (95.12%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MA+NTLMSCGI  TAFPS+LSSSKSKFA+++P+      +SSR SMSA+WMPGQPRPPYL
Sbjct: 1   MAANTLMSCGINATAFPSLLSSSKSKFASSIPLPSFN-GSSSRISMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTILVIEF+AIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFIAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP+K  EYKVKE+KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPKKFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           PRSV P
Sbjct: 241 PRSVLP 245

[Close]
BLAST of Lsi02G017210 vs. TrEMBL
Match: W8T3M4_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Pyrus x bretschneideri PE=2 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 1.3e-127
Identity = 222/247 (89.88%), Postives = 234/247 (94.74%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASNTLMSCGIAT AFPSVLSSSKSKFA +AV + G+  NA SRFSMSAEWMPG+PRPPY
Sbjct: 1   MASNTLMSCGIATAAFPSVLSSSKSKFATSAVQLPGIGANAPSRFSMSAEWMPGEPRPPY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLGY
Sbjct: 121 WAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDTEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+K +EYKVKEIKNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGD++
Sbjct: 181 SKDPKKFEEYKVKEIKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDVL 240

Query: 241 IPRSVSP 247
           IP+ + P
Sbjct: 241 IPKGILP 247

[Close]
BLAST of Lsi02G017210 vs. TAIR10
Match: AT3G54890.1 (AT3G54890.1 photosystem I light harvesting complex gene 1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.8e-118
Identity = 206/242 (85.12%), Postives = 218/242 (90.08%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]
BLAST of Lsi02G017210 vs. TAIR10
Match: AT3G08940.2 (AT3G08940.2 light harvesting complex photosystem II)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-38
Identity = 103/282 (36.52%), Postives = 141/282 (50.00%), Query Frame = 1 

Query: 3   SNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAE---WMPGQPRPPY 62
           S    +  I  T   S +SS+ S+F A         +     ++ ++   W PG   P Y
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEY 64

Query: 63  LDGSAPGDFGFDPLRLGEVPE--------------------------------------- 122
           LDGS  GD+GFDP  LG+  E                                       
Sbjct: 65  LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPY 124

Query: 123 ----NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVP 182
                L+RF+E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P
Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLP 184

Query: 183 WGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIK 238
           + ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K  + ++ EIK
Sbjct: 185 F-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIK 244

[Close]
BLAST of Lsi02G017210 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 154.5 bits (389), Expect = 8.8e-38
Identity = 101/266 (37.97%), Postives = 136/266 (51.13%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAE-----WMPGQP 60
           MAS+   S  IA  + PS L   K +    + +  V+   +S  +++A+     W PG  
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60

Query: 61  RPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 120
            P +LDGS PGDFGFDPL L   P++L+   ++E++HCRWAML   GI +PE L     +
Sbjct: 61  PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120

Query: 121 KAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKK 180
               W     G+  Y           T+ V+E + I + E +R        S+  DP   
Sbjct: 121 NTPSWYT--AGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP 180

Query: 181 K---------YPGGA-FDPLGY-SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPG 240
                     YPGG  FDPLG+ S  P KLKE + KEIKNGRLA+LA +G   Q   Y G
Sbjct: 181 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTG 240

Query: 241 TGPLENLATHLADPWHNNIGDIIIPR 243
           TGP++NL  HLADP H  I     P+
Sbjct: 241 TGPIDNLFAHLADPGHATIFAAFTPK 257

[Close]
BLAST of Lsi02G017210 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-37
Identity = 96/243 (39.51%), Postives = 133/243 (54.73%), Query Frame = 1 

Query: 14  TAFPSVLSSSKSKFAAAVPISGVAVNA-SSRFSMSA---EWMPGQPRPPYLDGSAPGDFG 73
           T+ P  L+ S  +    +  + +  +A +S F + A   EW+PG   P YL GS  GD G
Sbjct: 17  TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNG 76

Query: 74  FDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQAT 133
           FDPL L E PENL+ F ++EL++ RWAML V G+L+PE       +   EW     G+  
Sbjct: 77  FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQ 136

Query: 134 YLGQPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGG 193
           Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG
Sbjct: 137 Y------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG 196

Query: 194 AFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
            F+PL ++      +E K KE+ NGRLA+LAF+GF VQ +   G GP ENL  HL+DPWH
Sbjct: 197 IFNPLNFA----PTQEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWH 246

[Close]
BLAST of Lsi02G017210 vs. TAIR10
Match: AT4G10340.1 (AT4G10340.1 light harvesting complex of photosystem II 5)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 83/191 (43.46%), Postives = 112/191 (58.64%), Query Frame = 1 

Query: 57  PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL--GNW 116
           P YL+G   GD+G+DP  LG+ PEN  +++  ELIH RWAML   G ++PEAL     N 
Sbjct: 82  PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141

Query: 117 VKAQEW-----AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQR-SMEKDPEKKK 176
                W       + G    Y G+ +P   L   +V E + +   E+ R +   D E K 
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKL 201

Query: 177 YPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 236
           +PGG FDPLG +KDPE+    KVKEIKNGRLA+ A +GF + Q+   G GP+ENLA HL+
Sbjct: 202 HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLS 261

Query: 237 DPWHNNIGDII 240
           DP+ NN+  +I
Sbjct: 262 DPFGNNLLTVI 270

[Close]
BLAST of Lsi02G017210 vs. NCBI nr
Match: gi|659070218|ref|XP_008453995.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 502.3 bits (1292), Expect = 4.9e-139
Identity = 242/246 (98.37%), Postives = 246/246 (100.00%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMS+EWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           PR++SP
Sbjct: 241 PRTISP 246

[Close]
BLAST of Lsi02G017210 vs. NCBI nr
Match: gi|449452104|ref|XP_004143800.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 1.2e-137
Identity = 240/246 (97.56%), Postives = 243/246 (98.78%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           PR++SP
Sbjct: 241 PRTISP 246

[Close]
BLAST of Lsi02G017210 vs. NCBI nr
Match: gi|470143464|ref|XP_004307395.1| (PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 473.8 bits (1218), Expect = 1.8e-130
Identity = 227/246 (92.28%), Postives = 235/246 (95.53%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA AV +  V  NASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFATAVQLPSVGANASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP+K +EYKVKE+KNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPKKFEEYKVKEVKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           P+ + P
Sbjct: 241 PKGLLP 246

[Close]
BLAST of Lsi02G017210 vs. NCBI nr
Match: gi|703110579|ref|XP_010099628.1| (Chlorophyll a-b binding protein 6A [Morus notabilis])

HSP 1 Score: 471.5 bits (1212), Expect = 9.2e-130
Identity = 228/246 (92.68%), Postives = 236/246 (95.93%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MA+NTLMSCGIA TAFPSVLSSSKSKFA +  + GV VNASSRF+MSA+WMPGQPRPPYL
Sbjct: 1   MAANTLMSCGIA-TAFPSVLSSSKSKFATSGQLPGVGVNASSRFTMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEK KEYKVKEIKNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKFKEYKVKEIKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSVSP 247
           PRS+ P
Sbjct: 241 PRSILP 245

[Close]
BLAST of Lsi02G017210 vs. NCBI nr
Match: gi|595797124|ref|XP_007201239.1| (hypothetical protein PRUPE_ppa010511mg [Prunus persica])

HSP 1 Score: 469.5 bits (1207), Expect = 3.5e-129
Identity = 226/247 (91.50%), Postives = 236/247 (95.55%), Query Frame = 1 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA +AV +  V  NASSRFSMSA+WMPGQPRPPY
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFATSAVQLPSVGANASSRFSMSADWMPGQPRPPY 60

Query: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+K +EYKVKEIKNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGD+I
Sbjct: 181 SKDPKKFEEYKVKEIKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDVI 240

Query: 241 IPRSVSP 247
           IP+ + P
Sbjct: 241 IPKGILP 247

The following BLAST results are available for this feature:
BLAST of Lsi02G017210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB11_SOLLC2.3e-12085.77Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB... [more]
CAB6_ARATH6.8e-11785.12Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA... [more]
CB121_HORVU1.0e-10474.49Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC I... [more]
CB4B_ARATH3.1e-3736.52Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN... [more]
CB24_PEA9.1e-3740.25Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE... [more]
BLAST of Lsi02G017210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNM4_CUCSA8.3e-13897.56Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G49082... [more]
W9RZD3_9ROSA6.4e-13092.68Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_013420... [more]
M5VZM0_PRUPE2.4e-12991.50Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa010... [more]
A0A067JPE2_JATCU7.8e-12890.65Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_23938 ... [more]
W8T3M4_9ROSA1.3e-12789.88Chlorophyll a-b binding protein, chloroplastic OS=Pyrus x bretschneideri PE=2 SV... [more]
BLAST of Lsi02G017210 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54890.13.8e-11885.12 photosystem I light harvesting complex gene 1[more]
AT3G08940.21.8e-3836.52 light harvesting complex photosystem II[more]
AT3G61470.18.8e-3837.97 photosystem I light harvesting complex gene 2[more]
AT3G47470.11.5e-3739.51 light-harvesting chlorophyll-protein complex I subunit A4[more]
AT4G10340.11.3e-3643.46 light harvesting complex of photosystem II 5[more]
BLAST of Lsi02G017210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070218|ref|XP_008453995.1|4.9e-13998.37PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumis... [more]
gi|449452104|ref|XP_004143800.1|1.2e-13797.56PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus][more]
gi|470143464|ref|XP_004307395.1|1.8e-13092.28PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Fragaria vesca subs... [more]
gi|703110579|ref|XP_010099628.1|9.2e-13092.68Chlorophyll a-b binding protein 6A [Morus notabilis][more]
gi|595797124|ref|XP_007201239.1|3.5e-12991.50hypothetical protein PRUPE_ppa010511mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0010114 response to red light
biological_process GO:0009645 response to low light intensity stimulus
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0009409 response to cold
biological_process GO:0009637 response to blue light
biological_process GO:0009765 photosynthesis, light harvesting
cellular_component GO:0009523 photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0019904 protein domain specific binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G017210.1Lsi02G017210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..246
score: 2.6E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 57..211
score: 3.3
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 49..236
score: 3.8
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 40..240
score: 5.89
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 1..246
score: 2.6E