CsGy5G016500 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G016500
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationChr5 : 22847639 .. 22849579 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAACTTTAGATTCCCCAATCTCTCTACTGCAACTGCTTTTAGTCCCCTTCCTCTCCCTTCTTCTTCCTCCATTCTCACACCCTCACTCTCACTCTCTCAATCTCTTCTCTCTTTTTCTTCAATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCTTTCCCTTCAGTCCTTTCTTCTTCTAAGTCTAAATTCGCTGTCGGTGTCCCCATTTCCGGTGTCGCTGTCAATGCATCTTCCCGATTTTCCATGTCCGCTGAGTGGATGCCCGGCCAGCCCCGTCCCCCCTACCTCGATGGCTCAGCTCCTGGGTATTCAATTTTGAAATGACTTTTGTTTGTTTAATCTGGTGGGGTTTGTTAACGTAGGATGATGATTGCTTTTTCTAGGCCTTTGAGGAAATGTCCAAGAGAGTCCTGATACTCTTTGTGGATGCTTTGATTTGTCCTTGACTCCATGAAATCGTTATATGTGTGAATCTAAACTTACATAATTTTTTTTTTATAATTATTTGGCAAGATTTAAGTTTATAAACATTACTCAGCCTATATTTTCTTTTACCAATATTTTTAAAAATCAAGCTAAGTTTTCATAACTAAAAGAAGTAGTTTTTTTATGTTCTTTTGAACATAACTAAGAACTCAAGCCTTTCGTCAAAAGGGAAAACCTTGAGAGAAAGCAAACATAAATTCCATAAACTAAGAATGAAAGAGAAAATCATATCAAACTGGCCTCAGTTTTTGTCATGCTTAGTGATGATTAATTTACCCTTATTTATTAGCTGTAGTTTTTGGATAAGTAATGAATTAGAATCGATTAAACGTTTGAGATCTGTGGTCATGTTCAACAGTGATTTTGGATTCGACCCTCTTGGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTTAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGCTTACCAAATTCAGTTGCTTGATTCCGAGATTGATGGGGGCTTTTCCTTTTTCATTTTCCAATGCTGTTCCTTTTGTTTTTCAGCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTTAAAGCTCAAGAATGGGCAGCAGTTCCAGGAGGCCAAGCTACATACTTGGGACAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCTTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGATCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTAACTGCTCTCATTTTTTTCATAGCAATTAGAGAAGAATTGAACTTTTGATTACTTTTGACTCAAATGGTTATCTTATAATGAAAAACATTTGATACTAATTATCAAACACTTACGGGTTTGTAGGTCGATTGGCGCTATTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCGTTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATTCCCAGAACAATTTCGCCTTGAATTTTGTACTGAATCATACCAATTGTAATTAAGTTTCTGTGTATTAAATCTGAACTCAAGGCTTTCCTCTCTATGTGCCTTTGAACGTGCTCTGTAACTTGATTTTGACCTTCATTTTAGTGCATGGTGTTACAATTTGAGGAAGGAAAAAAAGGGATAAGATTACAAATTTAATCTTAAAGCTTTGGATTGTATGTCTATTTGGTTAATTTTTATTTATAAGAGAACACATGCATGATAAGTACAATCAAATCATTATCAAAATTTTGTTAGAACATTCAGTAGAAATTGCATCGTGAACAATATTCCCTCTAAAACTGTC

mRNA sequence

ATCAAACTTTAGATTCCCCAATCTCTCTACTGCAACTGCTTTTAGTCCCCTTCCTCTCCCTTCTTCTTCCTCCATTCTCACACCCTCACTCTCACTCTCTCAATCTCTTCTCTCTTTTTCTTCAATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCTTTCCCTTCAGTCCTTTCTTCTTCTAAGTCTAAATTCGCTGTCGGTGTCCCCATTTCCGGTGTCGCTGTCAATGCATCTTCCCGATTTTCCATGTCCGCTGAGTGGATGCCCGGCCAGCCCCGTCCCCCCTACCTCGATGGCTCAGCTCCTGGTGATTTTGGATTCGACCCTCTTGGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTTAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTTAAAGCTCAAGAATGGGCAGCAGTTCCAGGAGGCCAAGCTACATACTTGGGACAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCTTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGATCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGATTGGCGCTATTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCGTTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATTCCCAGAACAATTTCGCCTTGAATTTTGTACTGAATCATACCAATTGTAATTAAGTTTCTGTGTATTAAATCTGAACTCAAGGCTTTCCTCTCTATGTGCCTTTGAACGTGCTCTGTAACTTGATTTTGACCTTCATTTTAGTGCATGGTGTTACAATTTGAGGAAGGAAAAAAAGGGATAAGATTACAAATTTAATCTTAAAGCTTTGGATTGTATGTCTATTTGGTTAATTTTTATTTATAAGAGAACACATGCATGATAAGTACAATCAAATCATTATCAAAATTTTGTTAGAACATTCAGTAGAAATTGCATCGTGAACAATATTCCCTCTAAAACTGTC

Coding sequence (CDS)

ATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCTTTCCCTTCAGTCCTTTCTTCTTCTAAGTCTAAATTCGCTGTCGGTGTCCCCATTTCCGGTGTCGCTGTCAATGCATCTTCCCGATTTTCCATGTCCGCTGAGTGGATGCCCGGCCAGCCCCGTCCCCCCTACCTCGATGGCTCAGCTCCTGGTGATTTTGGATTCGACCCTCTTGGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTTAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTTAAAGCTCAAGAATGGGCAGCAGTTCCAGGAGGCCAAGCTACATACTTGGGACAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCTTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGATCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGATTGGCGCTATTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCGTTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATTCCCAGAACAATTTCGCCTTGA

Protein sequence

MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTISP
Homology
[Close]
BLAST of CsGy5G016500 vs. NCBI nr
Match: XP_004143800.1 (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus] >KGN51208.1 hypothetical protein Csa_5G490820 [Cucumis sativus])

HSP 1 Score: 508.1 bits (1307), Expect = 1.7e-140
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PRTISP
Sbjct: 241 PRTISP 246

[Close]
BLAST of CsGy5G016500 vs. NCBI nr
Match: XP_008453995.1 (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo])

HSP 1 Score: 500.0 bits (1286), Expect = 4.7e-138
Identity = 242/246 (98.37%), Postives = 243/246 (98.78%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMS+EWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PRTISP
Sbjct: 241 PRTISP 246

[Close]
BLAST of CsGy5G016500 vs. NCBI nr
Match: XP_022133484.1 (chlorophyll a-b binding protein 6A, chloroplastic [Momordica charantia])

HSP 1 Score: 496.1 bits (1276), Expect = 6.8e-137
Identity = 240/246 (97.56%), Postives = 240/246 (97.56%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGV  NASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVGANASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PR ISP
Sbjct: 241 PRNISP 246

[Close]
BLAST of CsGy5G016500 vs. NCBI nr
Match: XP_022921712.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_023515265.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 493.4 bits (1269), Expect = 4.4e-136
Identity = 238/246 (96.75%), Postives = 243/246 (98.78%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA GVPISGV+VNASSRFSMSA+WMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           K+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PRTISP
Sbjct: 241 PRTISP 246

[Close]
BLAST of CsGy5G016500 vs. NCBI nr
Match: XP_022939932.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_022993029.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 492.7 bits (1267), Expect = 7.5e-136
Identity = 239/246 (97.15%), Postives = 241/246 (97.97%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA GVPISGVAVNASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP KLKEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PR+ISP
Sbjct: 241 PRSISP 246

[Close]
BLAST of CsGy5G016500 vs. TAIR10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.6e-119
Identity = 207/242 (85.54%), Postives = 219/242 (90.50%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AVGVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]
BLAST of CsGy5G016500 vs. TAIR10
Match: AT5G01530.1 (light harvesting complex photosystem II)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-40
Identity = 97/232 (41.81%), Postives = 126/232 (54.31%), Query Frame = 0 

Query: 50  WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPE----------------------------- 109
           W PG   P +LDGS  GD+GFDP GLG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 110 --------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 169
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   V G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 170 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEK 229
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DPEK
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 230 LKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 238
             + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]
BLAST of CsGy5G016500 vs. TAIR10
Match: AT3G08940.2 (light harvesting complex photosystem II)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-39
Identity = 106/282 (37.59%), Postives = 140/282 (49.65%), Query Frame = 0 

Query: 3   SNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVN---ASSRFSMSAEWMPGQPRPPY 62
           S    +  I  T   S +SS+ S+F           +   A +  S    W PG   P Y
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEY 64

Query: 63  LDGSAPGDFGFDPLGLGEVPE--------------------------------------- 122
           LDGS  GD+GFDP GLG+  E                                       
Sbjct: 65  LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPY 124

Query: 123 ----NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVP 182
                L+RF+E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLGQP+P
Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLP 184

Query: 183 WGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIK 238
           + ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K  + ++ EIK
Sbjct: 185 F-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIK 244

[Close]
BLAST of CsGy5G016500 vs. TAIR10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-39
Identity = 102/266 (38.35%), Postives = 137/266 (51.50%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAE-----WMPGQP 60
           MAS+   S  IA  + PS L   K +    + +  V+   +S  +++A+     W PG  
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60

Query: 61  RPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 120
            P +LDGS PGDFGFDPLGL   P++L+   ++E++HCRWAML   GI +PE L     +
Sbjct: 61  PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120

Query: 121 KAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDP--- 180
               W     G+  Y           T+ V+E + I + E +R        S+  DP   
Sbjct: 121 NTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP 180

Query: 181 ------EKKKYPGGA-FDPLGY-SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPG 240
                     YPGG  FDPLG+ S  P KLKE + KEIKNGRLA+LA +G   Q   Y G
Sbjct: 181 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTG 240

Query: 241 TGPLENLATHLADPWHNNIGDIIIPR 243
           TGP++NL  HLADP H  I     P+
Sbjct: 241 TGPIDNLFAHLADPGHATIFAAFTPK 257

[Close]
BLAST of CsGy5G016500 vs. TAIR10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38
Identity = 97/243 (39.92%), Postives = 134/243 (55.14%), Query Frame = 0 

Query: 14  TAFPSVLSSSKSKFAVGVPISGVAVNA-SSRFSMSA---EWMPGQPRPPYLDGSAPGDFG 73
           T+ P  L+ S  +    +  + +  +A +S F + A   EW+PG   P YL GS  GD G
Sbjct: 17  TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNG 76

Query: 74  FDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQAT 133
           FDPLGL E PENL+ F ++EL++ RWAML V G+L+PE       +   EW     G+  
Sbjct: 77  FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQ 136

Query: 134 YLGQPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGG 193
           Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG
Sbjct: 137 Y------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG 196

Query: 194 AFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 236
            F+PL ++      +E K KE+ NGRLA+LAF+GF VQ +   G GP ENL  HL+DPWH
Sbjct: 197 IFNPLNFA----PTQEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWH 246

[Close]
BLAST of CsGy5G016500 vs. Swiss-Prot
Match: sp|P12360|CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB6A PE=2 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.8e-120
Identity = 210/246 (85.37%), Postives = 220/246 (89.43%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGI     PS LSS+KSKFA  +P+   A N  SRFSMSA+WMPGQPRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFD LGLGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP K +E KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 240

Query: 241 PRTISP 247
           P+ I P
Sbjct: 241 PKGIFP 245

[Close]
BLAST of CsGy5G016500 vs. Swiss-Prot
Match: sp|Q01667|CAB6_ARATH (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 2.8e-118
Identity = 207/242 (85.54%), Postives = 219/242 (90.50%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AVGVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]
BLAST of CsGy5G016500 vs. Swiss-Prot
Match: sp|Q9SDM1|CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.2e-106
Identity = 184/243 (75.72%), Postives = 202/243 (83.13%), Query Frame = 0 

Query: 2   ASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYLD 61
           +S+ L SC  +    PS+L+ S      G+P    A   S R +MSAEW PGQPRP +LD
Sbjct: 3   SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYA-TTSGRVTMSAEWFPGQPRPAHLD 62

Query: 62  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 121
           GS+PGDFGFDPLGL  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWA
Sbjct: 63  GSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWA 122

Query: 122 AVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 181
           A+P GQATYLG PVPWG LPTIL IEFLAIAF E QR+MEKDPEKKKYPGGAFDPLG+SK
Sbjct: 123 ALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSK 182

Query: 182 DPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 241
           DP K +E K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 183 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 242

Query: 242 RTI 245
           R I
Sbjct: 243 RNI 242

[Close]
BLAST of CsGy5G016500 vs. Swiss-Prot
Match: sp|Q07473|CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.4e-39
Identity = 97/232 (41.81%), Postives = 126/232 (54.31%), Query Frame = 0 

Query: 50  WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPE----------------------------- 109
           W PG   P +LDGS  GD+GFDP GLG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 110 --------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGG 169
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   V G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 170 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEK 229
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DPEK
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 230 LKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 238
             + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]
BLAST of CsGy5G016500 vs. Swiss-Prot
Match: sp|Q9SQL2|CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-38
Identity = 96/236 (40.68%), Postives = 128/236 (54.24%), Query Frame = 0 

Query: 20  LSSSKSKFAVGVPISGVAVNASSRFSMSA---EWMPGQPRPPYLDGSAPGDFGFDPLGLG 79
           L  S  K   GV    V  + S+ F + A   EW+PG   P YL GS PGD GFDPLGL 
Sbjct: 23  LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLA 82

Query: 80  EVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVP 139
           E PENL  F ++EL++ RWAML V G+L+PE       +   +W A         G+   
Sbjct: 83  EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAA--------GKEEY 142

Query: 140 WGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGY 199
           + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL +
Sbjct: 143 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNF 202

Query: 200 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 236
           +       E K KEI NGRLA+LAF+GF +Q +   G GP +NL  H++DPWHN I
Sbjct: 203 A----PTLEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 245

[Close]
BLAST of CsGy5G016500 vs. TrEMBL
Match: tr|A0A0A0KNM4|A0A0A0KNM4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 1.1e-140
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PRTISP
Sbjct: 241 PRTISP 246

[Close]
BLAST of CsGy5G016500 vs. TrEMBL
Match: tr|A0A1S3BYE0|A0A1S3BYE0_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494548 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 3.1e-138
Identity = 242/246 (98.37%), Postives = 243/246 (98.78%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMS+EWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRTISP 247
           PRTISP
Sbjct: 241 PRTISP 246

[Close]
BLAST of CsGy5G016500 vs. TrEMBL
Match: tr|A0A2I4GD50|A0A2I4GD50_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC109006875 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 5.3e-130
Identity = 229/247 (92.71%), Postives = 236/247 (95.55%), Query Frame = 0 

Query: 1   MASNTLMSCGIAT-TAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASNTLMS GIAT TAFPSVLSSSKSKFA  +P+  V  NASSRF+MSAEWMPGQPRPP+
Sbjct: 1   MASNTLMSYGIATSTAFPSVLSSSKSKFAAALPLPSVGANASSRFTMSAEWMPGQPRPPH 60

Query: 61  LDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGSAPGDFGFDPLGLG VPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV+AQE
Sbjct: 61  LDGSAPGDFGFDPLGLGAVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE 120

Query: 121 WAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAAVPGGQATYLG PVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII
Sbjct: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240

Query: 241 IPRTISP 247
           IPR++ P
Sbjct: 241 IPRSLYP 247

[Close]
BLAST of CsGy5G016500 vs. TrEMBL
Match: tr|A0A1Q3D9F2|A0A1Q3D9F2_CEPFO (Chlorophyll a-b binding protein, chloroplastic OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32491 PE=3 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 6.9e-130
Identity = 222/246 (90.24%), Postives = 234/246 (95.12%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           +ASNTLMSCGIATTAFPSVLSSSKSKFA  VP+  V  NA+SRF+MSAEWMPGQPRPPYL
Sbjct: 3   LASNTLMSCGIATTAFPSVLSSSKSKFAAAVPLPSVVANATSRFTMSAEWMPGQPRPPYL 62

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 63  DGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 122

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEK+KYPGGAFDPLGYS
Sbjct: 123 AAIPGGQATYLGNPVPWGTLPTILAIEFLSIAFVEHQRSMEKDPEKRKYPGGAFDPLGYS 182

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP+K +EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN IGD++I
Sbjct: 183 KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNTIGDVLI 242

Query: 241 PRTISP 247
           PR I P
Sbjct: 243 PRGIVP 248

[Close]
BLAST of CsGy5G016500 vs. TrEMBL
Match: tr|A0A2P6SJI7|A0A2P6SJI7_ROSCH (Chlorophyll a-b binding protein, chloroplastic OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0363641 PE=3 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 3.4e-129
Identity = 225/244 (92.21%), Postives = 233/244 (95.49%), Query Frame = 0 

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  V +  V VNASSRFSMSA+WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFATAVQLPSVGVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP+K +EYKVKEIKNGRLALLAFVGF VQQSAYPGTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPKKFEEYKVKEIKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGDVII 240

Query: 241 PRTI 245
           P+ I
Sbjct: 241 PKGI 244

The following BLAST results are available for this feature:
BLAST of CsGy5G016500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143800.11.7e-140100.00PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus] >... [more]
XP_008453995.14.7e-13898.37PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo][more]
XP_022133484.16.8e-13797.56chlorophyll a-b binding protein 6A, chloroplastic [Momordica charantia][more]
XP_022921712.14.4e-13696.75chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_... [more]
XP_022939932.17.5e-13697.15chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_... [more]
BLAST of CsGy5G016500 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54890.11.6e-11985.54photosystem I light harvesting complex gene 1[more]
AT5G01530.11.9e-4041.81light harvesting complex photosystem II[more]
AT3G08940.22.1e-3937.59light harvesting complex photosystem II[more]
AT3G61470.17.9e-3938.35photosystem I light harvesting complex gene 2[more]
AT3G47470.11.0e-3839.92light-harvesting chlorophyll-protein complex I subunit A4[more]
BLAST of CsGy5G016500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P12360|CB11_SOLLC1.8e-12085.37Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=408... [more]
sp|Q01667|CAB6_ARATH2.8e-11885.54Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|Q9SDM1|CB121_HORVU4.2e-10675.72Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ... [more]
sp|Q07473|CB4A_ARATH3.4e-3941.81Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX... [more]
sp|Q9SQL2|CB24_PEA2.2e-3840.68Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh... [more]
BLAST of CsGy5G016500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KNM4|A0A0A0KNM4_CUCSA1.1e-140100.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa... [more]
tr|A0A1S3BYE0|A0A1S3BYE0_CUCME3.1e-13898.37Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A2I4GD50|A0A2I4GD50_9ROSI5.3e-13092.71Chlorophyll a-b binding protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC1... [more]
tr|A0A1Q3D9F2|A0A1Q3D9F2_CEPFO6.9e-13090.24Chlorophyll a-b binding protein, chloroplastic OS=Cephalotus follicularis OX=377... [more]
tr|A0A2P6SJI7|A0A2P6SJI7_ROSCH3.4e-12992.21Chlorophyll a-b binding protein, chloroplastic OS=Rosa chinensis OX=74649 GN=Rch... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0009637 response to blue light
biological_process GO:0009409 response to cold
biological_process GO:0010218 response to far red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0009645 response to low light intensity stimulus
biological_process GO:0010114 response to red light
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009765 photosynthesis, light harvesting
cellular_component GO:0010287 plastoglobule
cellular_component GO:0016020 membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0019904 protein domain specific binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G016500.1CsGy5G016500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3DG3DSA:1.10.3460.10coord: 51..237
e-value: 5.2E-86
score: 289.2
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 57..211
e-value: 6.3E-48
score: 163.3
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 13..244
NoneNo IPR availableSUPERFAMILYSSF103511Chlorophyll a-b binding proteincoord: 40..240
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 13..244