Lsi02G014540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G014540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribulose bisphosphate carboxylase large chain
Location	chr02 : 20225909 .. 20233332 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTACACTCTAGAGATAAGATTGCAGCAGGAGCGATATAAAGAAGAAGGAACTGCAAAGTGAGAGGAGCGTCAGTGTGTGAAAAATTGAAATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGGTAATGGTCAAAAATGGGTTTTTCAAATTCCTCCCTAATGGCTTTTCTCTGTGGCTGTTTTTCTTTTTCTTTCTTTCTCTCTGTTGGGTGTTAGTGATTGCAATTGTAATTTGGTTTTGTGGTCTGTGGAATTGGGGCAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGTAATGACTTACATAACCCATTTAGTTTGTTTTATCTATAATATTTATGTTCTCAAAGTTGTGTTGAGGATTTCACATCAAAAAGAATTTAGGGACCTCACACTTTTTATATGATAGATGGACTACTCCTCTCATTGCCAATTGGTTTTGAGATGAAACTTGTGTTATCTAATGTGGTATTATCAGAGTCTATAAAGCTTAAACGAGTATTCGGTCTAATGAAAAAGCAATTGTGATCCGATCAAGAAATGGTGAACCCAAAAGAGGCACCATCTAGAGGGACATGTTGAGGATCCCACATTGGAAAAATCAAGAGTCCTCACATTTTTTATAAGACAAATCGGCTACTCCTCTTACTGCTAATTAGTTTTGAGATGGAACTCCATGTTATCTAATAAGTTGTACTAGTGCAAATGATCTTACTGAATCCCAACAAGGGATTTTAGAAATGTTGGTAATCAGGAGGGAATTGGAAGTGTGACCAAATAGTTGTTAGTTAGTTGCTGAGTCAGAGTGGTTATTGATTGGTTGTTTTTAACTAAATTTGTCTAGCTGGTTAATGGAGAGTGTAATGAACAAATATTCTGGTGTATACAGTCAATGAATGAGAATGACAAGGATACTTTGATTTAAGAGTGGAAGTTTCGTGGTATCAGGCTCTGAGTGATAAGCTTCCTTTCACTCTCCCTTCCTTTGCCACCCCTTTGATTTCAATCTCAAACAATGCATGCCATGTCTAATATCTGCAATATGATCCCTATTTAAATGGATTTTTGGGCAATTTCATCCTGTGGAAATATCTGATTACTTTCATTCTGGTAGTTCACAAGTTCATTTTTGTAGTGGGAAGCCTACTGAAATCCAATCCCTTTTTTCCAGCATTGGCAGCTAGTTGAATCTCCCAAATTAACCACATGTCTAAGAAATTGGTTTCTTAAGATTAGAAATATAGTAGAATCAAGTAGTTTTCCTATGAGAATAGTTGAGGTGTGTGCAAGTTGACATGGATTGTTTCGGACATCCAAAAAAAGGAAGAAAAAAGAGAGGCTGCTTTAAGTTTAAGCTCCCATGACACTGACAAAGCTTGTCTCTTCCTTCTCAAACAACATTATCCTACGTTATCTTGTTGGAAACACAACCTCAAAAAACTTTGGGAAAAACTTGAGATGCTCCATTCCTCTGTGATGAAGAAATCTACAGAATTGGTTGATATATGTAGCCAGTCACAGAGCTTTGAAGCAAATTGTGGCTGCAGGATCCATGCATATAGAAGAAGAGGATCTGCACATCCATATGGAAAATAGACATCCAGCTGAGTATAATACTTTTCCACGTCATTTAGAACCAAATCTAATTCAGTTACTTTTTAAGAGCTCCACGTAATATTGAAAGCTGAAGCAGATATAACTGAAAAGAACCCAAATTCGAAGATATCTTTTAGCAGACAATGACAATGTTTGTCTACGTTTGAATTTAATCAAACAAGACCTAATTTTTGTAGAGGAGGAATGGAGGTGATAGATACCAAAATGGAGGATGAGGTAGAAACAGTTCCAACAGTGGGCAATACCAAAATTTTAAGAATCATGTTTCACTAGAATTGGCAATTAAAACACTTTTTTTTCTCTTTCTCTATTTAATGTGTTGCTTCCAGTCTTTTGCCTATCCGTCAATGTTGCATTGGTAGTAATTGTTATCTTAATTCTTACTTTAGTTACTTTTGTATACAACACAAGCTTTTGCAAAAGATCATATTTCAAGGACAAAGTTTTAATGGCCCTTATTTTATTCACCTCACCAAATAGCTTCATTATGGTCAGCTGAAGAATAGCATAAATCTTTAGTTTCTCAACTTGGACAACTTGGAGCCAAAGTATCTTGTATTCTGTGGCATGGTAGGTTGCTGTTTCCTGGTGGTCATATACTTCACAATCTTATTTGAACTTTGATTGGAATGGTGATGTTTATTGGTCTACAAGTTGTTTTTATGGTTCCAGCTCCATTTCCTTGTATGGAAGAAAGCAGCAGACAATGGAGTCCATGAGCTTTACAGAAGCTGAGTACAATGTTTTAGCTTTGATGAGGGCTGAGATGTCTTGGATTTGGCAACTTCTCAACAACTTGTTGGCAAATCTCAGATCCTATCTACTTATTTGGAATGATAATATTTCATCTTTTCATCTTGCTCAATAACAGAACGTGTGAAAGTTAACTTTCGTGGTATTCATGTTTTCAAATAAGAAATTGAGATATAGTAACAAAAAGAAAGTGTCTCCTGTGGGCTGGAGGTAGTGGGAACGGCCATCCAAAGAAGCAACAAAAGAATGGTCTTCCAATATTAAGTAATTATAGATATAATTTCAAAAGAATTTTCTATGTTGAGCACCACCATGAAGCTATATGCTGCACACTATTATGAAAAGAATCAAAGGAAGAATACGTTTCTTCAAGATCCTTTGGTTTCATTCTTTTCAAAGAAGCCAAAAAAGGGCTCTAGTTGTCAACTCTACAAAAACCTTGCCTTACCCTTAAAGCCTCAACCCGATAGGGCTTCAACGAGGTCATCCAATTTTCTGGGAAATCACATTGACAAACCAAATTCTTTCAAAATAAAAATCCAACCACCCTGCACAAAAGGACAATGAAGGAAAATATGATCCAGAGTATCATTCACCCTATAACAAAAGCAGTTGGTCGAATGGGGCGAAGCCCATTTGGGGATTTTCTTTGGGGCTTCTCTTGAGTATCCATGAATTAGGAGAGTAAATCCCCAAATCCATCCATCTCTCGTTCTCATTTTTAGAATATTTGAACTTCCAAATGAGATCTACCAAGGCAGCCTTTAAGAGGGTAGACTACTTCTAAGATTTGTAAAGACGGATTTAGTGGTCAAATTGCCCAATGGCTCTGGGGAGGGACCATACAACCTTGTCTTTCCCGAAGTTCAACTTTACTGCATTTAACTTTTCAAATTATTGGATGAAAAGAACATTCTTATGAAGTTCATTTCAACCGTCTTATTTGAGGTCCATTAACTCATGTCTTTTTAGGCTAATCATTTGATAGAGGATGTTAGTAAAATAAGTATTAGTTAGTTGCTCAGTGGTATCCATTATTTGGTTAACTAACTTTGTTGAACTGGTTATTGGAATTTGACGTGCATTGGCACTCTGCTTTCACTATGTATTTAATGAGAATGACAATGGCACTTGACCAAACTATGACAATTTCAAACGTAACAGCATGATGATATCTATCAAAAAGTATAAATATGTTAAACAGTAAACTGTAGGCTGAAATTAATTATGAATCAGAACTGTTGTTTAATGCACATTCATTGAATTTCTTGAGATTGATCTTTATTTTTCTCAGGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTAACAAATCCTTTTCACTTGTTTCTTGATCGTCCATTCATATTCTATCCTTTCCATTTATTTCTTGATCTTCATATTCTATTAGCAAAATGATTTTAGGGTATCTGGGTAGCTAATTACTCAATGTAATTTTTCTTATGAGCATCAACAACAAGTATTAGCTTTTACTCTTTCAAATGATTTGGGGGTCTAATAGTTTGAGATGCCATTAGATGAACTTTTTCTTTTTTAGAAGCGAGACACCTCTTCTATAGCAATTTTTGGAAGAACTAAGAAGCACCAATTAAGTGCTTTCTCTGAAAATATTTTTACACGTCATGTTGTACTACTATCCATACTTGCCAAATGATTGGATGCTCATTTATTGAAACTTTGCCAGTCCGTTGGATAATTCTGTTCCCTATGCTACAAGGGACATTTTTGAGATGCATTCTTTCATCTTTTCCTGAATACCAGCAAATATTAGGCTGCATACTTTCTTTCTGTAGATAAGATAACATTTTATTGTCGCTGAATTTCTAAACTGGCCTGTGGCCATATGCAGAGCAGTTAAATAAAATATGACAGATATTTCGTTTTCTTGACTATCACTACCTTTTCTATGGGGATTTATTCAAATGATAATAAACTTGTCAGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACGTGAGTTAGATTTTATTTTTAGCTGTATTATGAAGCAGTTTTCTATTTCTTTTCTTTTCATTATGCCTACTCAATTACACTTATTTTTGCAGTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGGTACTTTATCTATTTTTCTATGTGATTAGAAACTTCATTTACTTGGTGATAGTTCAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTGTAAGCTGCTGGGTGCCCTGTAAATCCTTTGACTCCTTTGGGAGGGGCTTAGAACAAGGAAGTCAGAGGGCTGAACTGGAACAAAGTTATTGTAGTGACCAAGAGGACTTCCATGATGACAATGGAAAATCCTCGAGACGCTCCAGGGCTGGACCCGAGACTCCTACACTATCAACCCTTTTCATCCAAATAAATCACTCCTATAATACTCTTCCATGGACACAGTAAGGTTTCTTGCAAGTTGCAATAAATAAGGGAGGTATTACTTTTGGATCCTTCACTTTGAAGTCGGAACACCTGAACCCTCATAAACTTGGGAGAATTAACTCGGTCCCTACCTACAGAGGATGGGTCAGATTCAGAAATATCCCCTAAACTAATGGATCTTGGCTATTTTTTAAGGTGATTAGTAACGGCTTCTAGGGCCTTTTAGACTATGGAGTTAACTCCTTGCCTCATTGAATGCTTGGAAGTTGCCATCAAAGTTATGAGAAAGTATTTTGGCTTCATTTCCTCATAGGTTAAGTTGATAGATAAGGTCCAGGTCTTTATGGCTCAAGTGAAGCTTCTTCTGGGACCGCAATTTATGATTAAAAAAGAAGTGGTACACATTGTTAGAAAGAAACGTATCGCGCCTTATGCAGTTTTTGGAAGAAAAAAAAAATCTGAAAAGTTGAGTTCCATTGAAATAATTTAGTAAAATAGGGGGTAGTTTTTTGTCTCTTTGCAAATGCATATTTCAAAGTGATGCATTTGAGTAGGAATACGTGTTGGATAAGTGTTCAAAATCATGTGTGAATGTCCAAAATCTTGGATGAGTGTTCAAGAGATGCATTTGATTAGGAATGTGTGTGTTTGGCTATAAATATGTTAAATCTCTCAAAAAGAAGAGAAGGGGGAGGTGGGGGCTCATGGCTGAGGGGGATGGAAAAAGAAGAGAGAAAGGTGGGAGATGGGGGCTGGAGGGTAAAGAGGGAAAAGTGCACAAAACCCTAAAAAAGTTCAAAATATATACGGTTGGTTCGGTTCGGAGCAGGTTCCAAAAATTGGCTAGTTATTAAAATCTCTAAAACTGAACCAAATCGAAAATTTATCTTACCCAACCCTGAGTTACTTGAGTTTTTTGGGTTGCCAATATTTTCTTAACCCTCTCTAATTTCAAGCTGGCCAAAGAGCTTTGTCATGACAATGACCTAACAAGTCCAACTTGTAAAACTAAATCATATGAGTGAACTAGTAGCTCCAAAGGATATGATCTCAATTCTTAGATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGGTCTTAACTTTCCCATGCAAGACTAGCTCAACAAAGAGTGAGTTTGACCATGGACACCCCAACCATCCAAAGAGAGAAGCTGAAGTGTTTGTCGTCTCCCTATGTGACAAAGGGTTATGGACTGATTTGAGGATTAACTTGAGTATTTCAAGTAGTTTGAAATTAGAACAGGGAAGGGCACTCAACTTTCTTCCTCCCCAACTCTTGTAATCCTCATTTTCATACAGATAACTATTATGTGGTTCTTCTCAGAAACAGACACCAAACCTTGAGTTCTCTGCTGGAAATGTGACAAACAGGCAACCTTTTGTTTTCATTGGAGGGGGGTCGCCATGTTGCTATAAAAAATACTTCAATGTAATTACAGGGGTGGATCAAAGTGATTACATCGAAGAATTGATATGAAACGAAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGCTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGTAAATCAATAGATTGCTTATGTAGTTTATCCCTTGGACCTTTTTTAAGAAAGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTATGTGCTCTACGTCTGGGGGATTTGCGAATCCCTCCTGGCTAAATACTCGAGCCATCTTGTGCTTGATCTTTTAAAAATTTCAGGCATATACCATAACCATATGACTAAAGTTTAGAGAATATTTCCTCTCTAATTCAAGTATTGGATTATGTGCAGGGATATCGACAAGCGGGTGGTTTTTCTTCCCGAGATCAGGGAAACAGGAGAATATATTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCTCGAGTGAGAGTGAATGTTTTTGCCAACTGA

mRNA sequence

TGTACACTCTAGAGATAAGATTGCAGCAGGAGCGATATAAAGAAGAAGGAACTGCAAAGTGAGAGGAGCGTCAGTGTGTGAAAAATTGAAATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGCTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAATATTGGATTATGTGCAGGGATATCGACAAGCGGGTGGTTTTTCTTCCCGAGATCAGGGAAACAGGAGAATATATTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCTCGAGTGAGAGTGAATGTTTTTGCCAACTGA

Coding sequence (CDS)

ATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGCTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAATATTGGATTATGTGCAGGGATATCGACAAGCGGGTGGTTTTTCTTCCCGAGATCAGGGAAACAGGAGAATATATTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCTCGAGTGAGAGTGAATGTTTTTGCCAACTGA

Protein sequence

MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQGMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHNVVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVWTDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN

Homology

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BLAST of Lsi02G014540 vs. Swiss-Prot
Match: RK9_IPOTF (50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida GN=RPL9 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-50
Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 1


Query: 7   ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKG 66
           ALSWSSS +         +   TAK     +   +V QKK  K RKIILKEDV +LGKKG
Sbjct: 8   ALSWSSSSLLGNYKLSKNAPLGTAKLVERTSNFTIVCQKKTKKIRKIILKEDVQELGKKG 67

Query: 67  QLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVG 126
           QL++V+AGYYRNYL P+G AQIVTP LLKEM+IEEERIEAEKKRV EEAQQLALIFETVG
Sbjct: 68  QLMNVRAGYYRNYLLPMGMAQIVTPQLLKEMKIEEERIEAEKKRVKEEAQQLALIFETVG 127

Query: 127 AFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
            FKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR
Sbjct: 128 GFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQR 160

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BLAST of Lsi02G014540 vs. Swiss-Prot
Match: RK9_ARATH (50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.1e-49
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 1


Query: 1   MASITT-ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDV 60
           MAS T  +LSWSSS       +  G   ET K S  R    VV+QKKA K RK+ILKEDV
Sbjct: 1   MASSTALSLSWSSS--PCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDV 60

Query: 61  PDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLA 120
            DLGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA
Sbjct: 61  TDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLA 120

Query: 121 LIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           ++F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+
Sbjct: 121 MVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQK 158

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BLAST of Lsi02G014540 vs. Swiss-Prot
Match: RK9_PEA (50S ribosomal protein L9, chloroplastic OS=Pisum sativum GN=RPL9 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-48
Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 1


Query: 30  AKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIV 89
           ++F    +G +V AQKK  K+RKIILKED+ ++GKKG+L+DV+ G++RN+LFP GKAQ+V
Sbjct: 26  SQFPNKSSGFMVFAQKKTKKTRKIILKEDIVNVGKKGELLDVRVGFFRNFLFPSGKAQLV 85

Query: 90  TPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDL 149
           TP +LKEM+IEEERIEAEK+RV+EEAQQLAL FET GAFKVKRKGGKGKQIFG+VTAQDL
Sbjct: 86  TPGVLKEMKIEEERIEAEKRRVLEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDL 145

Query: 150 VDIIKAQLQR 160
           VDIIKAQLQR
Sbjct: 146 VDIIKAQLQR 155

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BLAST of Lsi02G014540 vs. Swiss-Prot
Match: RK9_WHEAT (50S ribosomal protein L9, chloroplastic OS=Triticum aestivum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.7e-40
Identity = 87/138 (63.04%), Postives = 110/138 (79.71%), Query Frame = 1


Query: 30  AKFSYGRT-------GMVVVAQKKATKSRKIILKEDVPDL-GKKGQLIDVKAGYYRNYLF 89
           A FSY R         +V+VAQ +  K R++ILK+D+ ++ GKKG  + V+AG+YRN+L 
Sbjct: 15  AAFSYPRRLQTRRAPSLVIVAQGRVKKYRQVILKDDIDEISGKKGDTMKVRAGFYRNFLL 74

Query: 90  PLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIF 149
           P GKA ++TP +LKEM++E+ERIEAEKKRV EEAQQLA +FET+GAFKV RKGGKGKQIF
Sbjct: 75  PKGKATLLTPDVLKEMQLEQERIEAEKKRVKEEAQQLARVFETIGAFKVPRKGGKGKQIF 134

Query: 150 GTVTAQDLVDIIKAQLQR 160
           G+VTAQDLVDIIK+QL R
Sbjct: 135 GSVTAQDLVDIIKSQLNR 152

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BLAST of Lsi02G014540 vs. Swiss-Prot
Match: RBL_EREMA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Eremothamnus marlothianus GN=rbcL PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.9e-32
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 247 VKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVWTDGHTN 306
           VKDYKL YYT  YETKDTDIL AF+VTPQ GVPPEEA A VAA SSTGTWTTVWTDG T+
Sbjct: 8   VKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTS 67

Query: 307 LDRYKGRCYGIEPVPGE 324
           LDRYKGRCYGIEPVPGE
Sbjct: 68  LDRYKGRCYGIEPVPGE 84

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BLAST of Lsi02G014540 vs. TrEMBL
Match: A0A0A0LXN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095030 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.3e-73
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS++D+GLPNV G+ EETAKFSYGRT MVVVAQKKA+KSRKIILKEDV 
Sbjct: 1   MASITTALSWSSSLLDMGLPNVAGNIEETAKFSYGRTAMVVVAQKKASKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IF+TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFQTVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

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BLAST of Lsi02G014540 vs. TrEMBL
Match: A5B1Y3_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_017618 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.7e-54
Identity = 125/172 (72.67%), Postives = 137/172 (79.65%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS   ALSWSSS       N   +F +  KFS  R   VVVAQKKA K RKIILKEDV 
Sbjct: 1   MASTAAALSWSSSTWXQTSVN---NFNQPRKFSDNRMVFVVVAQKKAKKLRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           +LGKKGQL+DVKAGYYRNYL P+G AQIVTP+LLKEMR+EEERIEAEKKRV EEAQQ+AL
Sbjct: 61  ELGKKGQLLDVKAGYYRNYLQPMGMAQIVTPLLLKEMRMEEERIEAEKKRVKEEAQQMAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVN 173
           +FETVGAFKVKRKGGKGKQIFG+VTAQDL DIIKAQLQR     F + SDV+
Sbjct: 121 MFETVGAFKVKRKGGKGKQIFGSVTAQDLTDIIKAQLQR---YSFPIYSDVD 166

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BLAST of Lsi02G014540 vs. TrEMBL
Match: W9S3W2_9ROSA (50S ribosomal protein L9 OS=Morus notabilis GN=L484_011777 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-54
Identity = 122/174 (70.11%), Postives = 136/174 (78.16%), Query Frame = 1


Query: 2   ASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPD 61
           +S  + LSWSSS +   L   GG+  E  K S  RT   ++AQKKA K+R IILKEDVP 
Sbjct: 3   SSTASTLSWSSSSL---LQRFGGNTNEAPKSSDPRTTFHILAQKKAKKARAIILKEDVPA 62

Query: 62  LGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALI 121
           LG KGQL++VKAGYYRNYL P GKAQIVTPVLLKEM+IEEERIEAEKKRV EEAQQLALI
Sbjct: 63  LGTKGQLLNVKAGYYRNYLHPTGKAQIVTPVLLKEMKIEEERIEAEKKRVKEEAQQLALI 122

Query: 122 FETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           FETVGAFKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR   +  V   ++   G
Sbjct: 123 FETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKRIVTLPEIRETG 173

[Close]

BLAST of Lsi02G014540 vs. TrEMBL
Match: F6GW80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00770 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-54
Identity = 121/159 (76.10%), Postives = 131/159 (82.39%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS   ALSWSSS     L     +F +  KFS  R   VVVAQKKA K RKIILKEDV 
Sbjct: 1   MASTAAALSWSSST---WLQTSVNNFNQPRKFSDNRMVFVVVAQKKAKKLRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           +LGKKGQL+DVKAGYYRNYL P+G AQIVTP+LLKEMR+EEERIEAEKKRV EEAQQ+AL
Sbjct: 61  ELGKKGQLLDVKAGYYRNYLQPMGMAQIVTPLLLKEMRMEEERIEAEKKRVKEEAQQMAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           +FETVGAFKVKRKGGKGKQIFG+VTAQDL DIIKAQLQR
Sbjct: 121 MFETVGAFKVKRKGGKGKQIFGSVTAQDLTDIIKAQLQR 156

[Close]

BLAST of Lsi02G014540 vs. TrEMBL
Match: V4UEF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029219mg PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 118/174 (67.82%), Postives = 138/174 (79.31%), Query Frame = 1


Query: 2   ASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPD 61
           +S    LSWSSS         G +  E+ K    R+ ++V+AQKKA K+RKIILKEDV +
Sbjct: 34  SSTAATLSWSSSSF---FQTFGNTVNESVKLPDKRSALLVLAQKKAKKTRKIILKEDVGE 93

Query: 62  LGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALI 121
           LGKKGQL+DVKAG+YRNYL P+GKAQIVTP+LLKEM++EEERIEAEKKRV EEAQQLALI
Sbjct: 94  LGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALI 153

Query: 122 FETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           FETVGAFKVKRKGGKGKQIFG+VTAQD+VDIIKAQLQR   +  VV  ++   G
Sbjct: 154 FETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVVLPEIRETG 204

[Close]

BLAST of Lsi02G014540 vs. TAIR10
Match: AT3G44890.1 (AT3G44890.1 ribosomal protein L9)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-50
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 1


Query: 1   MASITT-ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDV 60
           MAS T  +LSWSSS       +  G   ET K S  R    VV+QKKA K RK+ILKEDV
Sbjct: 1   MASSTALSLSWSSS--PCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDV 60

Query: 61  PDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLA 120
            DLGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA
Sbjct: 61  TDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLA 120

Query: 121 LIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           ++F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+
Sbjct: 121 MVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQK 158

[Close]

BLAST of Lsi02G014540 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 247 VKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVWTDGHTN 306
           VK+YKL YYT  YETKDTDIL AF+VTPQ GVPPEEA A VAA SSTGTWTTVWTDG T+
Sbjct: 17  VKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTS 76

Query: 307 LDRYKGRCYGIEPVPGE 324
           LDRYKGRCY IEPVPGE
Sbjct: 77  LDRYKGRCYHIEPVPGE 93

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: gi|659072090|ref|XP_008463369.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETG 175

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: gi|449459082|ref|XP_004147275.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS++D+GLPNV G+ EETAKFSYGRT MVVVAQKKA+KSRKIILKEDV 
Sbjct: 1   MASITTALSWSSSLLDMGLPNVAGNIEETAKFSYGRTAMVVVAQKKASKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IF+TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFQTVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: gi|1009179471|ref|XP_015871097.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 223.4 bits (568), Expect = 6.5e-55
Identity = 121/159 (76.10%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS  + LSWSSS +     + GG+     K S  RT MV++AQKKA K+R IILKEDV 
Sbjct: 1   MASTASTLSWSSSSL---FQSFGGNANGPTKLSDRRTAMVILAQKKAKKTRTIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGK+GQL++VKAGYYRN+L PLGKAQIVTP+LLKEM+IEEERIEAEKKRV +EAQQLAL
Sbjct: 61  DLGKQGQLLNVKAGYYRNFLHPLGKAQIVTPLLLKEMKIEEERIEAEKKRVKDEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 156

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: gi|702280530|ref|XP_010045300.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 223.0 bits (567), Expect = 8.5e-55
Identity = 124/175 (70.86%), Postives = 139/175 (79.43%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           M S    LSWSSS     L ++GG   E ++ S  R+ MVV+AQKKA K+RKIILKED  
Sbjct: 1   MTSPAATLSWSSSS---WLHSLGGCSNEASESSDRRSAMVVIAQKKAKKTRKIILKEDTE 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
            LGKKGQL+DVKAGYYRNYL P+GKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLAL
Sbjct: 61  YLGKKGQLLDVKAGYYRNYLLPMGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           +FETVGAFKVKRKGGKGK IFG+VTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 MFETVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKAQLQREVDKRIVVLPEIRETG 172

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: gi|1009174613|ref|XP_015868432.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-54
Identity = 119/159 (74.84%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS  + LSW+SS +     + GG+     K S  RT MV++AQKKA K+R IILKEDV 
Sbjct: 1   MASTASTLSWTSSSL---FQSFGGNANGPTKLSVRRTSMVILAQKKAKKTRTIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGK+GQL++VKAGYYRN+L PLGKAQIVTP+LLKEM+IEEERIEAEKKRV +EA+QLAL
Sbjct: 61  DLGKQGQLLNVKAGYYRNFLHPLGKAQIVTPLLLKEMKIEEERIEAEKKRVKDEAEQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 156

The following BLAST results are available for this feature:

BLAST of Lsi02G014540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK9_IPOTF	1.7e-50	72.55	50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida GN=RPL9 PE=3 SV=1	[more]
RK9_ARATH	3.1e-49	66.88	50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=2 SV=...	[more]
RK9_PEA	7.7e-48	73.85	50S ribosomal protein L9, chloroplastic OS=Pisum sativum GN=RPL9 PE=2 SV=2	[more]
RK9_WHEAT	7.7e-40	63.04	50S ribosomal protein L9, chloroplastic OS=Triticum aestivum GN=RPL9 PE=2 SV=1	[more]
RBL_EREMA	5.9e-32	85.71	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Eremothamnus marloth...	[more]

BLAST of Lsi02G014540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXN8_CUCSA	1.3e-73	93.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095030 PE=3 SV=1	[more]
A5B1Y3_VITVI	1.7e-54	72.67	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_017618 P...	[more]
W9S3W2_9ROSA	8.6e-54	70.11	50S ribosomal protein L9 OS=Morus notabilis GN=L484_011777 PE=3 SV=1	[more]
F6GW80_VITVI	8.6e-54	76.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00770 PE=3 SV=...	[more]
V4UEF5_9ROSI	1.5e-53	67.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029219mg PE=3 SV=1	[more]

BLAST of Lsi02G014540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44890.1	1.8e-50	66.88	ribosomal protein L9	[more]
ATCG00490.1	1.1e-31	83.12	ATCG00490.1 ribulose-bisphosphate carboxylases	[more]

BLAST of Lsi02G014540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072090\|ref\|XP_008463369.1\|	1.5e-75	87.43	PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo]	[more]
gi\|449459082\|ref\|XP_004147275.1\|	1.8e-73	93.08	PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis sativus]	[more]
gi\|1009179471\|ref\|XP_015871097.1\|	6.5e-55	76.10	PREDICTED: 50S ribosomal protein L9, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|702280530\|ref\|XP_010045300.1\|	8.5e-55	70.86	PREDICTED: 50S ribosomal protein L9, chloroplastic [Eucalyptus grandis]	[more]
gi\|1009174613\|ref\|XP_015868432.1\|	1.9e-54	74.84	PREDICTED: 50S ribosomal protein L9, chloroplastic-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0015977	carbon fixation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR020594	Ribosomal_L9_bac/chp
IPR020070	Ribosomal_L9_N
IPR020069	Ribosomal_L9_C
IPR017443	RuBisCO_lsu_fd_N
IPR009027	Ribosomal_L9/RNase_H1_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0044435	plastid part
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0000311	plastid large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G014540.1	Lsi02G014540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	unknown	SSF55658	L9 N-domain-like	coord: 52..107 score: 6.28
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	GENE3D	G3DSA:3.30.70.150		coord: 247..326 score: 1.2
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 254..327 score: 1.9
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	unknown	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 244..324 score: 5.5
IPR020069	Ribosomal protein L9, C-terminal	GENE3D	G3DSA:3.10.430.100		coord: 111..160 score: 5.8E-12coord: 329..368 score: 4.1
IPR020069	Ribosomal protein L9, C-terminal	PFAM	PF03948	Ribosomal_L9_C	coord: 113..158 score: 3.7E-5coord: 330..365 score: 7.
IPR020069	Ribosomal protein L9, C-terminal	unknown	SSF55653	Ribosomal protein L9 C-domain	coord: 329..367 score: 1.26E-6coord: 110..168 score: 1.0
IPR020070	Ribosomal protein L9, N-terminal	GENE3D	G3DSA:3.40.5.10		coord: 52..100 score: 2.0
IPR020070	Ribosomal protein L9, N-terminal	PFAM	PF01281	Ribosomal_L9_N	coord: 52..97 score: 9.9
IPR020070	Ribosomal protein L9, N-terminal	PROSITE	PS00651	RIBOSOMAL_L9	coord: 63..90 scor
IPR020594	Ribosomal protein L9, bacteria/chloroplast	HAMAP	MF_00503	Ribosomal_L9	coord: 51..368 score: 17
IPR020594	Ribosomal protein L9, bacteria/chloroplast	TIGRFAMs	TIGR00158	TIGR00158	coord: 52..157 score: 2.1
None	No IPR available	unknown	Coil	Coil	coord: 94..114 scor
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 255..323 score: 7.5
None	No IPR available	PANTHER	PTHR23321:SF33	SUBFAMILY NOT NAMED	coord: 255..323 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G014540	Csa1G095030	Cucumber (Chinese Long) v2	culsiB024
Lsi02G014540	CSPI01G12990	Wild cucumber (PI 183967)	cpilsiB023
Lsi02G014540	Cucsa.207500	Cucumber (Gy14) v1	cgylsiB354
Lsi02G014540	CmaCh13G002010	Cucurbita maxima (Rimu)	cmalsiB201
Lsi02G014540	CmoCh13G002060	Cucurbita moschata (Rifu)	cmolsiB191
Lsi02G014540	Cla005062	Watermelon (97103) v1	lsiwmB185
Lsi02G014540	MELO3C004995	Melon (DHL92) v3.5.1	lsimeB174
Lsi02G014540	ClCG03G002460	Watermelon (Charleston Gray)	lsiwcgB185
Lsi02G014540	MELO3C004995.2	Melon (DHL92) v3.6.1	lsimedB183
Lsi02G014540	Cla97C03G053510	Watermelon (97103) v2	lsiwmbB177
Lsi02G014540	Bhi08G000245	Wax gourd	lsiwgoB260
Lsi02G014540	CsGy1G013070	Cucumber (Gy14) v2	cgyblsiB020
Lsi02G014540	CsaV3_1G013140	Cucumber (Chinese Long) v3	cuclsiB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G014540	Cucurbita maxima (Rimu)	cmalsiB417
Lsi02G014540	Cucurbita moschata (Rifu)	cmolsiB403