Lsi02G011270 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G011270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionFasciclin-like arabinogalactan family protein, putative
Locationchr02 : 13180052 .. 13180453 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACATCACCACCCAACTAACCCTAAAAGAAATCACCTTCTTCATCCCTCAAGACCCTCAGCTCTCCAATATCTCCATCGCGGTCGACCATCTCGAGGCCTTTATCCTCAGCCATTTGATCGTCATGCCGCTTCAATTCGGCGACTTGATTCGATTTCCGACCGGTTCCATCGTTCCTTCAGGTTACCATAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTGTTGTCAATAATGCTGTAGTCAATGTTCCTAATGTTTGTTCTAGTTCTGAGGGTATTAAGTGTCATGGGGTTAATAAGGTTATTGATTATGGTAGAGCTTCTTATGGTAATCTTAATAATTAA

mRNA sequence

ATGAAAGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACATCACCACCCAACTAACCCTAAAAGAAATCACCTTCTTCATCCCTCAAGACCCTCAGCTCTCCAATATCTCCATCGCGGTCGACCATCTCGAGGCCTTTATCCTCAGCCATTTGATCGTCATGCCGCTTCAATTCGGCGACTTGATTCGATTTCCGACCGGTTCCATCGTTCCTTCAGGTTACCATAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTGTTGTCAATAATGCTGTAGTCAATGTTCCTAATGTTTGTTCTAGTTCTGAGGGTATTAAGTGTCATGGGGTTAATAAGGTTATTGATTATGGTAGAGCTTCTTATGGTAATCTTAATAATTAA

Coding sequence (CDS)

ATGAAAGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACATCACCACCCAACTAACCCTAAAAGAAATCACCTTCTTCATCCCTCAAGACCCTCAGCTCTCCAATATCTCCATCGCGGTCGACCATCTCGAGGCCTTTATCCTCAGCCATTTGATCGTCATGCCGCTTCAATTCGGCGACTTGATTCGATTTCCGACCGGTTCCATCGTTCCTTCAGGTTACCATAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTGTTGTCAATAATGCTGTAGTCAATGTTCCTAATGTTTGTTCTAGTTCTGAGGGTATTAAGTGTCATGGGGTTAATAAGGTTATTGATTATGGTAGAGCTTCTTATGGTAATCTTAATAATTAA

Protein sequence

MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPLQFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDYGRASYGNLNN
BLAST of Lsi02G011270 vs. Swiss-Prot
Match: Y4891_SELML (FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 29/118 (24.58%), Postives = 58/118 (49.15%), Query Frame = 1

Query: 8   GFAILLQMLNITTQLTLKEITFFIPQDPQLSNI--SIAVDHLEAFILSHLIVMPLQFGDL 67
           GF +   +      L     T  IP +  ++ +  +++ + +   +  H++  P  F  L
Sbjct: 83  GFTVAAAVAQSLQTLIPIRSTLLIPSNNAIAGVDANLSQEDIINTLQYHVLTFPTSFEAL 142

Query: 68  IRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDY 124
            R   G+ +P+     MI + ++  G+F +N   +  P+VCSS+  I CHG+++V+ Y
Sbjct: 143 SRNDVGAELPTMLQGEMITVTSNSPGNFTLNEVNITHPDVCSSTRFIACHGIDRVLAY 200

BLAST of Lsi02G011270 vs. TrEMBL
Match: A0A0A0LTE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181455 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.6e-56
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query: 15  MLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPLQFGDLIRFPTGSIV 74
           MLNITTQLTLKEITFFIPQDPQ+SNISIAVD LEAF+LSH+I+MPLQF DLIRFPTGSIV
Sbjct: 1   MLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPLQFSDLIRFPTGSIV 60

Query: 75  PSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDYGRASYGNLNN 134
           PSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKVI+YGRA+YGNL+N
Sbjct: 61  PSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKVINYGRATYGNLSN 119

BLAST of Lsi02G011270 vs. TrEMBL
Match: M5WS19_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024968mg PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-33
Identity = 73/130 (56.15%), Postives = 96/130 (73.85%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           M++KS+YGFAILLQMLN T+Q   + +TF +P D QLS   I+VDHLE F++SH +  PL
Sbjct: 16  MRSKSYYGFAILLQMLNSTSQ-PYRSLTFLMPGDSQLSESPISVDHLEDFLISHAVTTPL 75

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F DL+ FPTGS++PSG  N+MIRI+N GR +F VNNA +  PN+C +S  IKCHG++ V
Sbjct: 76  LFNDLLHFPTGSLIPSGAENKMIRINNRGRANFFVNNAHIVTPNICQNSY-IKCHGIDTV 135

Query: 121 IDYGRASYGN 131
           I Y  +SY N
Sbjct: 136 IQYENSSYIN 143

BLAST of Lsi02G011270 vs. TrEMBL
Match: K7LB82_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G012100 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           M+AKS+YGFA+LLQMLN T+Q   +++TF +P D +LS  SI++D +E F+L H I MPL
Sbjct: 41  MRAKSYYGFAMLLQMLNGTSQPNNRDLTFLMPDDKELSASSISIDEVEEFLLKHAIPMPL 100

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F DL  FPTG++VPSG   +MIRIHN  RG F VNNA +   NVC SS  IKCHGV+ +
Sbjct: 101 YFNDLSHFPTGTLVPSGNRTQMIRIHNRARGDFFVNNAQIVSANVCLSSV-IKCHGVDAI 160

Query: 121 IDY 124
           I+Y
Sbjct: 161 IEY 162

BLAST of Lsi02G011270 vs. TrEMBL
Match: A0A0B2S969_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015179 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           M+AKS+YGFA+LLQMLN T+Q   +++TF +P D +LS  SI++D +E F+L H I MPL
Sbjct: 41  MRAKSYYGFAMLLQMLNGTSQPNNRDLTFLMPDDKELSASSISIDEVEEFLLKHAIPMPL 100

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F DL  FPTG++VPSG   +MIRIHN  RG F VNNA +   NVC SS  IKCHGV+ +
Sbjct: 101 YFNDLSHFPTGTLVPSGNRTQMIRIHNRARGDFFVNNAQIVSANVCLSSV-IKCHGVDAI 160

Query: 121 IDY 124
           I+Y
Sbjct: 161 IEY 162

BLAST of Lsi02G011270 vs. TrEMBL
Match: V7BNR7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G141400g PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           M+AKS+YGFA+LLQMLN TT   +++ TF +P D QLS+ SI VD +  F+L H I MPL
Sbjct: 39  MRAKSYYGFAMLLQMLNGTTAQPIRDFTFLMPDDKQLSSSSIFVDEVGEFLLKHAIPMPL 98

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F DL  FPTG++VPSG  +RMIRI+N G+  F VNNA +   NVC +S  IKCHGV+ +
Sbjct: 99  HFNDLSHFPTGTLVPSGNSSRMIRIYNRGKRDFFVNNAKIVSANVCLNSV-IKCHGVDAI 158

Query: 121 IDY 124
           IDY
Sbjct: 159 IDY 160

BLAST of Lsi02G011270 vs. NCBI nr
Match: gi|778665017|ref|XP_011648466.1| (PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.8e-63
Identity = 121/133 (90.98%), Postives = 130/133 (97.74%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           MKA+SFYGFAILLQMLNITTQLTLKEITFFIPQDPQ+SNISIAVD LEAF+LSH+I+MPL
Sbjct: 44  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPL 103

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
           QF DLIRFPTGSIVPSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKV
Sbjct: 104 QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 163

Query: 121 IDYGRASYGNLNN 134
           I+YGRA+YGNL+N
Sbjct: 164 INYGRATYGNLSN 176

BLAST of Lsi02G011270 vs. NCBI nr
Match: gi|659127255|ref|XP_008463608.1| (PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 2.0e-62
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           MKA+SFYGFAILLQMLNITTQLTLKEITFFIPQD QLSNISIAV+HLEAF+LSHLIVMPL
Sbjct: 38  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDSQLSNISIAVNHLEAFVLSHLIVMPL 97

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
           QF DLIRFPTGSIVPSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKV
Sbjct: 98  QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 157

Query: 121 IDYGRASYGNLNN 134
           I+YG  +YGNLNN
Sbjct: 158 INYGGVTYGNLNN 170

BLAST of Lsi02G011270 vs. NCBI nr
Match: gi|700209937|gb|KGN65033.1| (hypothetical protein Csa_1G181455 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query: 15  MLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPLQFGDLIRFPTGSIV 74
           MLNITTQLTLKEITFFIPQDPQ+SNISIAVD LEAF+LSH+I+MPLQF DLIRFPTGSIV
Sbjct: 1   MLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPLQFSDLIRFPTGSIV 60

Query: 75  PSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDYGRASYGNLNN 134
           PSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKVI+YGRA+YGNL+N
Sbjct: 61  PSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKVINYGRATYGNLSN 119

BLAST of Lsi02G011270 vs. NCBI nr
Match: gi|645242203|ref|XP_008227441.1| (PREDICTED: uncharacterized protein LOC103326958 [Prunus mume])

HSP 1 Score: 148.3 bits (373), Expect = 9.6e-33
Identity = 73/130 (56.15%), Postives = 96/130 (73.85%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           M++KS+YGFAILLQMLN T+Q   + +TF +P D QLS   I+VDHLE F++SH +  PL
Sbjct: 35  MRSKSYYGFAILLQMLNSTSQ-PYRSLTFLMPGDSQLSESPISVDHLEDFLISHAVTTPL 94

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F DL+ FPTGS++PSG  N+MIRI+N GR +F VNNA +  PN+C +S  IKCHG++ V
Sbjct: 95  LFNDLLHFPTGSLIPSGAENKMIRINNRGRANFFVNNAHIVTPNICQNSY-IKCHGIDTV 154

Query: 121 IDYGRASYGN 131
           I Y  +SY N
Sbjct: 155 IQYENSSYIN 162

BLAST of Lsi02G011270 vs. NCBI nr
Match: gi|595915273|ref|XP_007214802.1| (hypothetical protein PRUPE_ppa024968mg, partial [Prunus persica])

HSP 1 Score: 148.3 bits (373), Expect = 9.6e-33
Identity = 73/130 (56.15%), Postives = 96/130 (73.85%), Query Frame = 1

Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFILSHLIVMPL 60
           M++KS+YGFAILLQMLN T+Q   + +TF +P D QLS   I+VDHLE F++SH +  PL
Sbjct: 16  MRSKSYYGFAILLQMLNSTSQ-PYRSLTFLMPGDSQLSESPISVDHLEDFLISHAVTTPL 75

Query: 61  QFGDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F DL+ FPTGS++PSG  N+MIRI+N GR +F VNNA +  PN+C +S  IKCHG++ V
Sbjct: 76  LFNDLLHFPTGSLIPSGAENKMIRINNRGRANFFVNNAHIVTPNICQNSY-IKCHGIDTV 135

Query: 121 IDYGRASYGN 131
           I Y  +SY N
Sbjct: 136 IQYENSSYIN 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y4891_SELML2.6e-0624.58FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii G... [more]
Match NameE-valueIdentityDescription
A0A0A0LTE3_CUCSA9.6e-5690.76Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181455 PE=4 SV=1[more]
M5WS19_PRUPE6.7e-3356.15Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024968mg PE=4 S... [more]
K7LB82_SOYBN1.8e-3056.91Uncharacterized protein OS=Glycine max GN=GLYMA_09G012100 PE=4 SV=1[more]
A0A0B2S969_GLYSO1.8e-3056.91Uncharacterized protein OS=Glycine soja GN=glysoja_015179 PE=4 SV=1[more]
V7BNR7_PHAVU1.2e-2956.91Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G141400g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778665017|ref|XP_011648466.1|6.8e-6390.98PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis sativu... [more]
gi|659127255|ref|XP_008463608.1|2.0e-6291.73PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo][more]
gi|700209937|gb|KGN65033.1|1.4e-5590.76hypothetical protein Csa_1G181455 [Cucumis sativus][more]
gi|645242203|ref|XP_008227441.1|9.6e-3356.15PREDICTED: uncharacterized protein LOC103326958 [Prunus mume][more]
gi|595915273|ref|XP_007214802.1|9.6e-3356.15hypothetical protein PRUPE_ppa024968mg, partial [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000782FAS1_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G011270.1Lsi02G011270.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000782FAS1 domainunknownSSF82153FAS1 domaincoord: 5..121
score: 4.3
NoneNo IPR availablePANTHERPTHR36069FAMILY NOT NAMEDcoord: 1..123
score: 2.0
NoneNo IPR availablePANTHERPTHR36069:SF2FASCICLIN-LIKE ARABINOGALACTAN FAMILY PROTEINcoord: 1..123
score: 2.0

The following gene(s) are paralogous to this gene:

None