ClCG01G010650 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010650
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Fasciclin-like arabinogalactan family protein
Location	CG_Chr01 : 16579481 .. 16579882 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACATCACCACCCAACTAACCCTAAAAGAAATCACCTTCTTCATCCCCCAAGACCCTCAGCTCTCCAATATCTCCATCGCCGTCGACCATCTTGAGGCCTTCGTCCTCAGCCATTTGATCGTCATGCCACTTCAATTCAGTGACTTGATTCGATTTCCAACCGGTTCCATCGTTCCTTCAGGTTACCATAATAGGATGATCAGAATCCATAACCACGGAAGAGGCCATTTTGTTGTCAATAATGCTGTAGTCAACGTTCCTAATGTTTGTTCTAGTTCTGAGGGTATTAAGTGTCATGGGGTTAATAAGGTTATTGATTATGGTAGGGCTTCTTATGGTAATCTTCATAATTAA

mRNA sequence

ATGAAGGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACATCACCACCCAACTAACCCTAAAAGAAATCACCTTCTTCATCCCCCAAGACCCTCAGCTCTCCAATATCTCCATCGCCGTCGACCATCTTGAGGCCTTCGTCCTCAGCCATTTGATCGTCATGCCACTTCAATTCAGTGACTTGATTCGATTTCCAACCGGTTCCATCGTTCCTTCAGGTTACCATAATAGGATGATCAGAATCCATAACCACGGAAGAGGCCATTTTGTTGTCAATAATGCTGTAGTCAACGTTCCTAATGTTTGTTCTAGTTCTGAGGGTATTAAGTGTCATGGGGTTAATAAGGTTATTGATTATGGTAGGGCTTCTTATGGTAATCTTCATAATTAA

Coding sequence (CDS)

ATGAAGGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACATCACCACCCAACTAACCCTAAAAGAAATCACCTTCTTCATCCCCCAAGACCCTCAGCTCTCCAATATCTCCATCGCCGTCGACCATCTTGAGGCCTTCGTCCTCAGCCATTTGATCGTCATGCCACTTCAATTCAGTGACTTGATTCGATTTCCAACCGGTTCCATCGTTCCTTCAGGTTACCATAATAGGATGATCAGAATCCATAACCACGGAAGAGGCCATTTTGTTGTCAATAATGCTGTAGTCAACGTTCCTAATGTTTGTTCTAGTTCTGAGGGTATTAAGTGTCATGGGGTTAATAAGGTTATTGATTATGGTAGGGCTTCTTATGGTAATCTTCATAATTAA

Protein sequence

MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPLQFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDYGRASYGNLHN

Homology

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BLAST of ClCG01G010650 vs. Swiss-Prot
Match: Y4891_SELML (FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-07
Identity = 29/118 (24.58%), Postives = 56/118 (47.46%), Query Frame = 1


Query: 8   GFAILLQMLNITTQLTLKEITFFIPQDPQLSNI--SIAVDHLEAFVLSHLIVMPLQFSDL 67
           GF +   +      L     T  IP +  ++ +  +++ + +   +  H++  P  F  L
Sbjct: 83  GFTVAAAVAQSLQTLIPIRSTLLIPSNNAIAGVDANLSQEDIINTLQYHVLTFPTSFEAL 142

Query: 68  IRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDY 124
            R   G+ +P+     MI + ++  G+F +N   +  P+VCSS+  I CHG+++V+ Y
Sbjct: 143 SRNDVGAELPTMLQGEMITVTSNSPGNFTLNEVNITHPDVCSSTRFIACHGIDRVLAY 200

[Close]

BLAST of ClCG01G010650 vs. TrEMBL
Match: A0A0A0LTE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181455 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.7e-57
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1


Query: 15  MLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPLQFSDLIRFPTGSIV 74
           MLNITTQLTLKEITFFIPQDPQ+SNISIAVD LEAFVLSH+I+MPLQFSDLIRFPTGSIV
Sbjct: 1   MLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPLQFSDLIRFPTGSIV 60

Query: 75  PSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDYGRASYGNLHN 134
           PSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKVI+YGRA+YGNL N
Sbjct: 61  PSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKVINYGRATYGNLSN 119

[Close]

BLAST of ClCG01G010650 vs. TrEMBL
Match: M5WS19_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024968mg PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           M++KS+YGFAILLQMLN T+Q   + +TF +P D QLS   I+VDHLE F++SH +  PL
Sbjct: 16  MRSKSYYGFAILLQMLNSTSQ-PYRSLTFLMPGDSQLSESPISVDHLEDFLISHAVTTPL 75

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F+DL+ FPTGS++PSG  N+MIRI+N GR +F VNNA +  PN+C +S  IKCHG++ V
Sbjct: 76  LFNDLLHFPTGSLIPSGAENKMIRINNRGRANFFVNNAHIVTPNICQNSY-IKCHGIDTV 135

Query: 121 IDYGRASYGN 131
           I Y  +SY N
Sbjct: 136 IQYENSSYIN 143

[Close]

BLAST of ClCG01G010650 vs. TrEMBL
Match: A0A0B2S969_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015179 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-31
Identity = 70/123 (56.91%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           M+AKS+YGFA+LLQMLN T+Q   +++TF +P D +LS  SI++D +E F+L H I MPL
Sbjct: 41  MRAKSYYGFAMLLQMLNGTSQPNNRDLTFLMPDDKELSASSISIDEVEEFLLKHAIPMPL 100

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F+DL  FPTG++VPSG   +MIRIHN  RG F VNNA +   NVC SS  IKCHGV+ +
Sbjct: 101 YFNDLSHFPTGTLVPSGNRTQMIRIHNRARGDFFVNNAQIVSANVCLSSV-IKCHGVDAI 160

Query: 121 IDY 124
           I+Y
Sbjct: 161 IEY 162

[Close]

BLAST of ClCG01G010650 vs. TrEMBL
Match: K7LB82_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G012100 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-31
Identity = 70/123 (56.91%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           M+AKS+YGFA+LLQMLN T+Q   +++TF +P D +LS  SI++D +E F+L H I MPL
Sbjct: 41  MRAKSYYGFAMLLQMLNGTSQPNNRDLTFLMPDDKELSASSISIDEVEEFLLKHAIPMPL 100

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F+DL  FPTG++VPSG   +MIRIHN  RG F VNNA +   NVC SS  IKCHGV+ +
Sbjct: 101 YFNDLSHFPTGTLVPSGNRTQMIRIHNRARGDFFVNNAQIVSANVCLSSV-IKCHGVDAI 160

Query: 121 IDY 124
           I+Y
Sbjct: 161 IEY 162

[Close]

BLAST of ClCG01G010650 vs. TrEMBL
Match: V7BNR7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G141400g PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-30
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           M+AKS+YGFA+LLQMLN TT   +++ TF +P D QLS+ SI VD +  F+L H I MPL
Sbjct: 39  MRAKSYYGFAMLLQMLNGTTAQPIRDFTFLMPDDKQLSSSSIFVDEVGEFLLKHAIPMPL 98

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F+DL  FPTG++VPSG  +RMIRI+N G+  F VNNA +   NVC +S  IKCHGV+ +
Sbjct: 99  HFNDLSHFPTGTLVPSGNSSRMIRIYNRGKRDFFVNNAKIVSANVCLNSV-IKCHGVDAI 158

Query: 121 IDY 124
           IDY
Sbjct: 159 IDY 160

[Close]

BLAST of ClCG01G010650 vs. NCBI nr
Match: gi|778665017|ref|XP_011648466.1| (PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 3.6e-64
Identity = 123/133 (92.48%), Postives = 130/133 (97.74%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           MKA+SFYGFAILLQMLNITTQLTLKEITFFIPQDPQ+SNISIAVD LEAFVLSH+I+MPL
Sbjct: 44  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPL 103

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
           QFSDLIRFPTGSIVPSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKV
Sbjct: 104 QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 163

Query: 121 IDYGRASYGNLHN 134
           I+YGRA+YGNL N
Sbjct: 164 INYGRATYGNLSN 176

[Close]

BLAST of ClCG01G010650 vs. NCBI nr
Match: gi|659127255|ref|XP_008463608.1| (PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 123/133 (92.48%), Postives = 129/133 (96.99%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           MKA+SFYGFAILLQMLNITTQLTLKEITFFIPQD QLSNISIAV+HLEAFVLSHLIVMPL
Sbjct: 38  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDSQLSNISIAVNHLEAFVLSHLIVMPL 97

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
           QFSDLIRFPTGSIVPSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKV
Sbjct: 98  QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 157

Query: 121 IDYGRASYGNLHN 134
           I+YG  +YGNL+N
Sbjct: 158 INYGGVTYGNLNN 170

[Close]

BLAST of ClCG01G010650 vs. NCBI nr
Match: gi|700209937|gb|KGN65033.1| (hypothetical protein Csa_1G181455 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1


Query: 15  MLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPLQFSDLIRFPTGSIV 74
           MLNITTQLTLKEITFFIPQDPQ+SNISIAVD LEAFVLSH+I+MPLQFSDLIRFPTGSIV
Sbjct: 1   MLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPLQFSDLIRFPTGSIV 60

Query: 75  PSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKVIDYGRASYGNLHN 134
           PSGYHNRMIRIHN+GRGHFVVNNAVVNVPNVCSSS GIKCHGVNKVI+YGRA+YGNL N
Sbjct: 61  PSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKVINYGRATYGNLSN 119

[Close]

BLAST of ClCG01G010650 vs. NCBI nr
Match: gi|645242203|ref|XP_008227441.1| (PREDICTED: uncharacterized protein LOC103326958 [Prunus mume])

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           M++KS+YGFAILLQMLN T+Q   + +TF +P D QLS   I+VDHLE F++SH +  PL
Sbjct: 35  MRSKSYYGFAILLQMLNSTSQ-PYRSLTFLMPGDSQLSESPISVDHLEDFLISHAVTTPL 94

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F+DL+ FPTGS++PSG  N+MIRI+N GR +F VNNA +  PN+C +S  IKCHG++ V
Sbjct: 95  LFNDLLHFPTGSLIPSGAENKMIRINNRGRANFFVNNAHIVTPNICQNSY-IKCHGIDTV 154

Query: 121 IDYGRASYGN 131
           I Y  +SY N
Sbjct: 155 IQYENSSYIN 162

[Close]

BLAST of ClCG01G010650 vs. NCBI nr
Match: gi|595915273|ref|XP_007214802.1| (hypothetical protein PRUPE_ppa024968mg, partial [Prunus persica])

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 1   MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDHLEAFVLSHLIVMPL 60
           M++KS+YGFAILLQMLN T+Q   + +TF +P D QLS   I+VDHLE F++SH +  PL
Sbjct: 16  MRSKSYYGFAILLQMLNSTSQ-PYRSLTFLMPGDSQLSESPISVDHLEDFLISHAVTTPL 75

Query: 61  QFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSEGIKCHGVNKV 120
            F+DL+ FPTGS++PSG  N+MIRI+N GR +F VNNA +  PN+C +S  IKCHG++ V
Sbjct: 76  LFNDLLHFPTGSLIPSGAENKMIRINNRGRANFFVNNAHIVTPNICQNSY-IKCHGIDTV 135

Query: 121 IDYGRASYGN 131
           I Y  +SY N
Sbjct: 136 IQYENSSYIN 143

The following BLAST results are available for this feature:

BLAST of ClCG01G010650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4891_SELML	4.1e-07	24.58	FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii G...	[more]

BLAST of ClCG01G010650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE3_CUCSA	8.7e-57	92.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181455 PE=4 SV=1	[more]
M5WS19_PRUPE	1.4e-33	56.15	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024968mg PE=4 S...	[more]
A0A0B2S969_GLYSO	4.8e-31	56.91	Uncharacterized protein OS=Glycine soja GN=glysoja_015179 PE=4 SV=1	[more]
K7LB82_SOYBN	4.8e-31	56.91	Uncharacterized protein OS=Glycine max GN=GLYMA_09G012100 PE=4 SV=1	[more]
V7BNR7_PHAVU	3.1e-30	56.91	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G141400g PE=4 SV=1	[more]

BLAST of ClCG01G010650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665017\|ref\|XP_011648466.1\|	3.6e-64	92.48	PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis sativu...	[more]
gi\|659127255\|ref\|XP_008463608.1\|	2.3e-63	92.48	PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo]	[more]
gi\|700209937\|gb\|KGN65033.1\|	1.2e-56	92.44	hypothetical protein Csa_1G181455 [Cucumis sativus]	[more]
gi\|645242203\|ref\|XP_008227441.1\|	1.9e-33	56.15	PREDICTED: uncharacterized protein LOC103326958 [Prunus mume]	[more]
gi\|595915273\|ref\|XP_007214802.1\|	1.9e-33	56.15	hypothetical protein PRUPE_ppa024968mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000782	FAS1_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010650.1	ClCG01G010650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	unknown	SSF82153	FAS1 domain	coord: 5..121 score: 1.7
None	No IPR available	PANTHER	PTHR36069	FAMILY NOT NAMED	coord: 1..123 score: 1.1
None	No IPR available	PANTHER	PTHR36069:SF2	FASCICLIN-LIKE ARABINOGALACTAN FAMILY PROTEIN	coord: 1..123 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010650	Cla009047	Watermelon (97103) v1	wcgwmB146
ClCG01G010650	Cla97C01G010430	Watermelon (97103) v2	wcgwmbB089
ClCG01G010650	Cucsa.180510	Cucumber (Gy14) v1	cgywcgB321
ClCG01G010650	CmoCh13G004100	Cucurbita moschata (Rifu)	cmowcgB173
ClCG01G010650	Lsi02G011270	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G010650	Carg25114	Silver-seed gourd	carwcgB1011

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010650	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G010650	Cucumber (Chinese Long) v3	cucwcgB534
ClCG01G010650	Wax gourd	wcgwgoB241
ClCG01G010650	Cucurbita maxima (Rimu)	cmawcgB182
ClCG01G010650	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G010650	Cucurbita moschata (Rifu)	cmowcgB345
ClCG01G010650	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010650	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010650	Melon (DHL92) v3.5.1	mewcgB142
ClCG01G010650	Cucurbita pepo (Zucchini)	cpewcgB030
ClCG01G010650	Cucurbita pepo (Zucchini)	cpewcgB457
ClCG01G010650	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010650	Melon (DHL92) v3.6.1	medwcgB126
ClCG01G010650	Silver-seed gourd	carwcgB0053