Lsi02G005530 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G005530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 4855334 .. 4855789 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTTGAAGAAGAATAATATTCAAAAAAATGTGAGGATAAGGAAGAAGAGAGTGAAGTACTGTGTGAGAAAATCCCACCGCCACACAAATACTGCTGTCCCAAATTCTCCATCTTCTTCATCTACTTTTAATTATCCCATTATTAATAATATTCCCAATAACACCAATTTCATCGACAAATCATCTCATCATTCTCCCCCACACGAAATTCAACAGGAACATGCTTCTAATTCCTTCCATGTCCACTTGTCGGATACCCTTTCTTCCATTGTCGAAGATGATCCTGTTCCTCCGCCGTCTACGGCTGACGACGGCCAAGTGGAGGCGGATGCCAGTGGGGTCGGTTGCAGGGGATTGGAGAGCCGGACAATAGACATTGCAGCAGTTTTGGAAGATCAACAACGGAATTCTAATGCTAAGATCAAGATCGAAGCTCCATCACGTACGTAA

mRNA sequence

ATGGCTCCCTTGAAGAAGAATAATATTCAAAAAAATGTGAGGATAAGGAAGAAGAGAGTGAAGTACTGTGTGAGAAAATCCCACCGCCACACAAATACTGCTGTCCCAAATTCTCCATCTTCTTCATCTACTTTTAATTATCCCATTATTAATAATATTCCCAATAACACCAATTTCATCGACAAATCATCTCATCATTCTCCCCCACACGAAATTCAACAGGAACATGCTTCTAATTCCTTCCATGTCCACTTGTCGGATACCCTTTCTTCCATTGTCGAAGATGATCCTGTTCCTCCGCCGTCTACGGCTGACGACGGCCAAGTGGAGGCGGATGCCAGTGGGGTCGGTTGCAGGGGATTGGAGAGCCGGACAATAGACATTGCAGCAGTTTTGGAAGATCAACAACGGAATTCTAATGCTAAGATCAAGATCGAAGCTCCATCACGTACGTAA

Coding sequence (CDS)

ATGGCTCCCTTGAAGAAGAATAATATTCAAAAAAATGTGAGGATAAGGAAGAAGAGAGTGAAGTACTGTGTGAGAAAATCCCACCGCCACACAAATACTGCTGTCCCAAATTCTCCATCTTCTTCATCTACTTTTAATTATCCCATTATTAATAATATTCCCAATAACACCAATTTCATCGACAAATCATCTCATCATTCTCCCCCACACGAAATTCAACAGGAACATGCTTCTAATTCCTTCCATGTCCACTTGTCGGATACCCTTTCTTCCATTGTCGAAGATGATCCTGTTCCTCCGCCGTCTACGGCTGACGACGGCCAAGTGGAGGCGGATGCCAGTGGGGTCGGTTGCAGGGGATTGGAGAGCCGGACAATAGACATTGCAGCAGTTTTGGAAGATCAACAACGGAATTCTAATGCTAAGATCAAGATCGAAGCTCCATCACGTACGTAA

Protein sequence

MAPLKKNNIQKNVRIRKKRVKYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFIDKSSHHSPPHEIQQEHASNSFHVHLSDTLSSIVEDDPVPPPSTADDGQVEADASGVGCRGLESRTIDIAAVLEDQQRNSNAKIKIEAPSRT
BLAST of Lsi02G005530 vs. TrEMBL
Match: A0A0A0LUL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058070 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.9e-32
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 1

Query: 5   KKNNIQKN-VRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+ N VRIRKKRV  KYC+RK+H HT   +P+S  SSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPSS--SSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

BLAST of Lsi02G005530 vs. NCBI nr
Match: gi|778658302|ref|XP_011652463.1| (PREDICTED: uncharacterized protein LOC101216177 isoform X2 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 7.1e-32
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 1

Query: 5   KKNNIQKN-VRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+ N VRIRKKRV  KYC+RK+H HT   +P+S  SSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPSS--SSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

BLAST of Lsi02G005530 vs. NCBI nr
Match: gi|778658299|ref|XP_011652459.1| (PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 7.1e-32
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 1

Query: 5   KKNNIQKN-VRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+ N VRIRKKRV  KYC+RK+H HT   +P+S  SSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPSS--SSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

BLAST of Lsi02G005530 vs. NCBI nr
Match: gi|659067657|ref|XP_008440605.1| (PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = 1

Query: 1   MAPL--KKNNIQKN-VRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+ N VRIRKKRV  +YC+RKSHRHT   +P+S  SSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPSS--SSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUL7_CUCSA4.9e-3263.82Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778658302|ref|XP_011652463.1|7.1e-3263.82PREDICTED: uncharacterized protein LOC101216177 isoform X2 [Cucumis sativus][more]
gi|778658299|ref|XP_011652459.1|7.1e-3263.82PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Cucumis ... [more]
gi|659067657|ref|XP_008440605.1|1.2e-3163.52PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005530.1Lsi02G005530.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G005530MELO3C002412.2Melon (DHL92) v3.6.1lsimedB189
Lsi02G005530CsGy1G010180Cucumber (Gy14) v2cgyblsiB018
The following gene(s) are paralogous to this gene:

None