CsGy1G010180 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010180
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 6341987 .. 6342442 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAGCTTCAAGAAGAAGAATGGTATTAAAAGTAATAATGTGAGAATAAGAAAGAAGAGGGTGAACTTGAAGTACTGTATCAGAAAAGCCCACCACCACACAAAACTTCCATCTTCTTCGTCATCCACTTTTAATCATCCCATTAATATTAATATTCCTAATAACACCAATTTCATCCCCCGATCATCTCACCAATCTCCCTCACGTGAAATTCAAGAGGAGCAATATGCTTCTAATTCTTTTCATGCCCACTTGTCGGAGGATACCATTTCTTCAATTATTCCTCCCCCGTCTACGGCTGACGACGGCCAATTGGAAGTGGATGCCGGTGGTGGGCTCGGTAGCAGGGGATCGGACTGCCAAACAATAGACATTGCAGCAGTTTTGGAAAATCAACAACTACGGAATAGTTCCAATGCCAAGAATAGCGATGCTCCATCACGTACGTAA

mRNA sequence

ATGGCTTCCAGCTTCAAGAAGAAGAATGGTATTAAAAGTAATAATGTGAGAATAAGAAAGAAGAGGGTGAACTTGAAGTACTGTATCAGAAAAGCCCACCACCACACAAAACTTCCATCTTCTTCGTCATCCACTTTTAATCATCCCATTAATATTAATATTCCTAATAACACCAATTTCATCCCCCGATCATCTCACCAATCTCCCTCACGTGAAATTCAAGAGGAGCAATATGCTTCTAATTCTTTTCATGCCCACTTGTCGGAGGATACCATTTCTTCAATTATTCCTCCCCCGTCTACGGCTGACGACGGCCAATTGGAAGTGGATGCCGGTGGTGGGCTCGGTAGCAGGGGATCGGACTGCCAAACAATAGACATTGCAGCAGTTTTGGAAAATCAACAACTACGGAATAGTTCCAATGCCAAGAATAGCGATGCTCCATCACGTACGTAA

Coding sequence (CDS)

ATGGCTTCCAGCTTCAAGAAGAAGAATGGTATTAAAAGTAATAATGTGAGAATAAGAAAGAAGAGGGTGAACTTGAAGTACTGTATCAGAAAAGCCCACCACCACACAAAACTTCCATCTTCTTCGTCATCCACTTTTAATCATCCCATTAATATTAATATTCCTAATAACACCAATTTCATCCCCCGATCATCTCACCAATCTCCCTCACGTGAAATTCAAGAGGAGCAATATGCTTCTAATTCTTTTCATGCCCACTTGTCGGAGGATACCATTTCTTCAATTATTCCTCCCCCGTCTACGGCTGACGACGGCCAATTGGAAGTGGATGCCGGTGGTGGGCTCGGTAGCAGGGGATCGGACTGCCAAACAATAGACATTGCAGCAGTTTTGGAAAATCAACAACTACGGAATAGTTCCAATGCCAAGAATAGCGATGCTCCATCACGTACGTAA

Protein sequence

MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNFIPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPSRT

Homology

[Close]

BLAST of CsGy1G010180 vs. NCBI nr
Match: XP_011652459.1 (PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Cucumis sativus] >KGN64472.1 hypothetical protein Csa_1G058070 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 2.2e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF
Sbjct: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS 120
           IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS
Sbjct: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS 120

Query: 121 DCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           DCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 DCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of CsGy1G010180 vs. NCBI nr
Match: XP_011652463.1 (PREDICTED: uncharacterized protein LOC101216177 isoform X2 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 2.2e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF
Sbjct: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS 120
           IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS
Sbjct: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS 120

Query: 121 DCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           DCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 DCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of CsGy1G010180 vs. NCBI nr
Match: XP_008440605.2 (PREDICTED: uncharacterized protein LOC103484975 isoform X1 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MA SFKKKN IKSNNVRIRKKRVNL+YC+RK+H HTKLPSSSSSTFNHPIN NIPNNTNF
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTKLPSSSSSTFNHPINNNIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTA-DDGQLEVDAGGGLGSRG 120
           IPRSSHQSPS EIQEE Y SNSFHAHLSEDTISSII P STA DDGQLE +A GGLGSRG
Sbjct: 61  IPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIHPQSTADDDGQLEANAAGGLGSRG 120

Query: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           SDCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

[Close]

BLAST of CsGy1G010180 vs. NCBI nr
Match: XP_016900951.1 (PREDICTED: uncharacterized protein LOC103484975 isoform X2 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MA SFKKKN IKSNNVRIRKKRVNL+YC+RK+H HTKLPSSSSSTFNHPIN NIPNNTNF
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTKLPSSSSSTFNHPINNNIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTA-DDGQLEVDAGGGLGSRG 120
           IPRSSHQSPS EIQEE Y SNSFHAHLSEDTISSII P STA DDGQLE +A GGLGSRG
Sbjct: 61  IPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIHPQSTADDDGQLEANAAGGLGSRG 120

Query: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           SDCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

[Close]

BLAST of CsGy1G010180 vs. TrEMBL
Match: tr|A0A0A0LUL7|A0A0A0LUL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058070 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF
Sbjct: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS 120
           IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS
Sbjct: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTADDGQLEVDAGGGLGSRGS 120

Query: 121 DCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           DCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 DCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of CsGy1G010180 vs. TrEMBL
Match: tr|A0A1S4DY91|A0A1S4DY91_CUCME (uncharacterized protein LOC103484975 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484975 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MA SFKKKN IKSNNVRIRKKRVNL+YC+RK+H HTKLPSSSSSTFNHPIN NIPNNTNF
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTKLPSSSSSTFNHPINNNIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTA-DDGQLEVDAGGGLGSRG 120
           IPRSSHQSPS EIQEE Y SNSFHAHLSEDTISSII P STA DDGQLE +A GGLGSRG
Sbjct: 61  IPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIHPQSTADDDGQLEANAAGGLGSRG 120

Query: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           SDCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

[Close]

BLAST of CsGy1G010180 vs. TrEMBL
Match: tr|A0A1S3B243|A0A1S3B243_CUCME (uncharacterized protein LOC103484975 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484975 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MASSFKKKNGIKSNNVRIRKKRVNLKYCIRKAHHHTKLPSSSSSTFNHPININIPNNTNF 60
           MA SFKKKN IKSNNVRIRKKRVNL+YC+RK+H HTKLPSSSSSTFNHPIN NIPNNTNF
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTKLPSSSSSTFNHPINNNIPNNTNF 60

Query: 61  IPRSSHQSPSREIQEEQYASNSFHAHLSEDTISSIIPPPSTA-DDGQLEVDAGGGLGSRG 120
           IPRSSHQSPS EIQEE Y SNSFHAHLSEDTISSII P STA DDGQLE +A GGLGSRG
Sbjct: 61  IPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIHPQSTADDDGQLEANAAGGLGSRG 120

Query: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150
           SDCQTIDIAAVLENQQLRNSSNAKNSDAPS
Sbjct: 121 SDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

The following BLAST results are available for this feature:

BLAST of CsGy1G010180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652459.1	2.2e-74	100.00	PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Cucumis ...	[more]
XP_011652463.1	2.2e-74	100.00	PREDICTED: uncharacterized protein LOC101216177 isoform X2 [Cucumis sativus]	[more]
XP_008440605.2	1.8e-63	89.33	PREDICTED: uncharacterized protein LOC103484975 isoform X1 [Cucumis melo]	[more]
XP_016900951.1	1.8e-63	89.33	PREDICTED: uncharacterized protein LOC103484975 isoform X2 [Cucumis melo]	[more]

BLAST of CsGy1G010180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUL7\|A0A0A0LUL7_CUCSA	1.5e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058070 PE=4 SV=1	[more]
tr\|A0A1S4DY91\|A0A1S4DY91_CUCME	1.2e-63	89.33	uncharacterized protein LOC103484975 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B243\|A0A1S3B243_CUCME	1.2e-63	89.33	uncharacterized protein LOC103484975 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010180.1	CsGy1G010180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010180	Csa1G058070	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010180	MELO3C002412	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010180	CSPI01G10160	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010180	Lsi02G005530	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010180	MELO3C002412.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010180	CsaV3_1G010240	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010180	Cla97C03G055450	Watermelon (97103) v2	cgybwmbB032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010180	Silver-seed gourd	carcgybB0500
CsGy1G010180	Silver-seed gourd	carcgybB0989
CsGy1G010180	Wax gourd	cgybwgoB023
CsGy1G010180	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010180	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010180	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010180	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010180	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010180	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010180	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010180	Watermelon (97103) v1	cgybwmB010