Lsi02G002090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G002090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Reticulon-like protein
Location	chr02 : 1735448 .. 1738101 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATAAAAAGCAAATAGACAAGGTTGATTGATATATACAAAACCTTATGTTTATAAGGACGACCATGAAATGAATTGACATGAAAAGAAGAGGAACTGCCTTTCTTGTAGTAAAGGGTATGCAAAAGGAAAAGACACACAGCCATATCCCACAAGCCATTCCTTCCTTTAACTTAGCTTTCTTTACTATCAAGCTTAGAATTGAACCCCCCCATCCCCTCTTTCATATACTACACCTAATTTTAAACCACCTTACTTCCCACAGCCACTCCATTCCAAAACCTCTAAACAAAAATCCTTCACCTCTCTCCCATATCATGTCGACCTACTCCGACTCCGACGATGATTCGGTACCTCCGTCAAAGCTCTTCGGACGCCGCCGCCCCATTCACGAAATATTTGGAGGAGGGAAAGGTAAAACCCCAATACCTAATTAATCTACTTTTCGTATATATATATTTTGTTATATTGTGGTATTTAAAGTGAGAAAAATTGAAGCCTGCAATTACAAATAGTACTAAAGGAATTAATCGGTCGGTAAAGAAGTTCAAGACTCTTTTCTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTGTGTGTTTCAATAATGAATTTCTAAAAAATTCCTTTCGTATATGTACCATGTTATATTGTCACGTTTCAATTATTAATGAATTTCTTTCATGTAATTTTGGGATATATATATATATATGGGGATGCAGTTGCGGACATATTGTTATGGAAAGACAAAAAGTTGTCGGGTGGATTGCTGTTGGGAATGACAGTTTTATGGTTTTTGTTTGAGGTTGTTGAATACAACTTTGTCACTCTCATTTGCCATCTCTCTATCACCTCCATGCTCATCTTCTTCATTTGGTGCACTGGTGCTGAATTTTTCAAATGGTATTACACATCTTTCTATATTCAAATTCAAGTCATTTTTATCTTATAATAACTATATATATTATATTATACATGCAGCAATTGAGTTCGTTTAGGTTGACTATTACATTATACTAAAATGTATTACTGTGAGTTTAAAAGCAATTAATTACATCTTATCTTCCATGATATAAATACTTTCAACCTTTTAGTCGTGAATATAATGTCTTTAATCAGTTAAACTGATAAAAGAAGATGGGATATAATTTAACAAAATAATAAACTTATTAACAAATTCTAATAGACTAACTAAACCAATTTCATCTGATGTATATATCTAATATAATATATTACTATATAATTGGTTAGCATGTCATTTAAGTTCTTTTATTTGAATTAATTCATCCCATTTTAATTTTCCCACTTTCAAATATTTAAATTTGATTGATGTACTTTAAATAAAATAGTAAGATTGAATTTTTTTTTTTTTGCTTAGTTTGAAGTTAATATTTATTAAAATTGATAAATAACAATAATAGAGTGTATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATGAAGGGTTTGTAGCATTGGAAACTCTGCCATTTCTATATGAAAAATATGAAGAAGAGGTTGATCAGTTTGCTGGGAAGGCCATTTCTCAAACCAAGAAATCTTACAGAAATTTCGATGCCAAATTCCTCAACAAGATCCCAAGAGGACCTGTCAAAGACAAGAAACTCAGA

mRNA sequence

GAATAAAAAGCAAATAGACAAGGTTGATTGATATATACAAAACCTTATGTTTATAAGGACGACCATGAAATGAATTGACATGAAAAGAAGAGGAACTGCCTTTCTTGTAGTAAAGGGTATGCAAAAGGAAAAGACACACAGCCATATCCCACAAGCCATTCCTTCCTTTAACTTAGCTTTCTTTACTATCAAGCTTAGAATTGAACCCCCCCATCCCCTCTTTCATATACTACACCTAATTTTAAACCACCTTACTTCCCACAGCCACTCCATTCCAAAACCTCTAAACAAAAATCCTTCACCTCTCTCCCATATCATGTCGACCTACTCCGACTCCGACGATGATTCGGTACCTCCGTCAAAGCTCTTCGGACGCCGCCGCCCCATTCACGAAATATTTGGAGGAGGGAAAGTTGCGGACATATTGTTATGGAAAGACAAAAAGTTGTCGGGTGGATTGCTGTTGGGAATGACAGTTTTATGGTTTTTGTTTGAGGTTGTTGAATACAACTTTGTCACTCTCATTTGCCATCTCTCTATCACCTCCATGCTCATCTTCTTCATTTGGTGCACTGGTGCTGAATTTTTCAAATGGTATTACACATCTTTCTATATTCAAATTCAATTTGCTGGGAAGGCCATTTCTCAAACCAAGAAATCTTACAGAAATTTCGATGCCAAATTCCTCAACAAGATCCCAAGAGGACCTGTCAAAGACAAGAAACTCAGA

Coding sequence (CDS)

ATGAAAAGAAGAGGAACTGCCTTTCTTGTAGTAAAGGGTATGCAAAAGGAAAAGACACACAGCCATATCCCACAAGCCATTCCTTCCTTTAACTTAGCTTTCTTTACTATCAAGCTTAGAATTGAACCCCCCCATCCCCTCTTTCATATACTACACCTAATTTTAAACCACCTTACTTCCCACAGCCACTCCATTCCAAAACCTCTAAACAAAAATCCTTCACCTCTCTCCCATATCATGTCGACCTACTCCGACTCCGACGATGATTCGGTACCTCCGTCAAAGCTCTTCGGACGCCGCCGCCCCATTCACGAAATATTTGGAGGAGGGAAAGTTGCGGACATATTGTTATGGAAAGACAAAAAGTTGTCGGGTGGATTGCTGTTGGGAATGACAGTTTTATGGTTTTTGTTTGAGGTTGTTGAATACAACTTTGTCACTCTCATTTGCCATCTCTCTATCACCTCCATGCTCATCTTCTTCATTTGGTGCACTGGTGCTGAATTTTTCAAATGGTATTACACATCTTTCTATATTCAAATTCAATTTGCTGGGAAGGCCATTTCTCAAACCAAGAAATCTTACAGAAATTTCGATGCCAAATTCCTCAACAAGATCCCAAGAGGACCTGTCAAAGACAAGAAACTCAGA

Protein sequence

MKRRGTAFLVVKGMQKEKTHSHIPQAIPSFNLAFFTIKLRIEPPHPLFHILHLILNHLTSHSHSIPKPLNKNPSPLSHIMSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVVEYNFVTLICHLSITSMLIFFIWCTGAEFFKWYYTSFYIQIQFAGKAISQTKKSYRNFDAKFLNKIPRGPVKDKKLR

Homology

[Close]

BLAST of Lsi02G002090 vs. Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-26
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 84  SDSDDDSV--PPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVV 143
           SDS+D+      +KLF R+R IH IFGGGKVADILLW++ K++  L++G+++LWFL EVV
Sbjct: 9   SDSEDERTIHKTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVV 68

Query: 144 EYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           EYNF+TLICH S+TSML FFIW T ++F  W
Sbjct: 69  EYNFITLICHASMTSMLFFFIWSTASDFLNW 99

[Close]

BLAST of Lsi02G002090 vs. Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.9e-20
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 1


Query: 61  HSHSIPKPLNKNPSPLSHIMSTYSDSDDDSVPPS------KLFGRRRPIHEIFGGGKVAD 120
           H  SI + +++         S+ SDSDDD    S      +LFGR +P+H++FGGGK AD
Sbjct: 7   HEESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFGGGKPAD 66

Query: 121 ILLWKDKKLSGGLLLGMTVLWFLFEVVEYNFVTLICHLSITSMLIFFIWCTGAEF 170
           I LW++KK+SGG+L   TV W LFE++EYN +TL  H+SI ++ + F+W + + F
Sbjct: 67  IFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTF 121

[Close]

BLAST of Lsi02G002090 vs. Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 81  STYSDSDDDSVPPS-------------KLFGRRRPIHEIFGGGKVADILLWKDKKLSGGL 140
           S+ S SDD++   S             +LFGR RP+H++ GGGK ADI +WKDKK+SGG+
Sbjct: 41  SSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGV 100

Query: 141 LLGMTVLWFLFEVVEYNFVTLICHLSITSMLIFFIWCTGAEF 170
             G TV W LFE++EY+ +TL+CH+ I ++ + F+W     F
Sbjct: 101 FGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMF 142

[Close]

BLAST of Lsi02G002090 vs. Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 95  KLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVVEYNFVTLICHLSI 154
           +LFGR +P+H++ GGGK ADI +WK+KK+SGG+L G T  W +FE++EY+ +TL+CH+ I
Sbjct: 72  RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMI 131

Query: 155 TSMLIFFIWCTGAEF 170
             + + F+W     F
Sbjct: 132 VVLAVLFLWSNATMF 146

[Close]

BLAST of Lsi02G002090 vs. Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-17
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 81  STYSDSDDDSVPPS-----------KLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLL 140
           S+ SDSDDD    S           +LFGR +P+H++ GGGK ADI LW++KK+SGG+L 
Sbjct: 26  SSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLG 85

Query: 141 GMTVLWFLFEVVEYNFVTLICHLSITSMLIFFIWCTGAEF 170
            +T  W LFE+ EY+ +  +CH +I ++   F+W     F
Sbjct: 86  AVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTF 125

[Close]

BLAST of Lsi02G002090 vs. TrEMBL
Match: A0A0A0LTQ2_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_1G042570 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.9e-42
Identity = 84/93 (90.32%), Postives = 90/93 (96.77%), Query Frame = 1


Query: 80  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFE 139
           MS+YSDSDDDSVP SKLFGRRRP+++IFGGG+VADILLWKDKK S GLLLGMTVLWFLFE
Sbjct: 1   MSSYSDSDDDSVPRSKLFGRRRPVYDIFGGGRVADILLWKDKKKSAGLLLGMTVLWFLFE 60

Query: 140 VVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           +VEYNFVTLICHLSITSMLIFFIWCTGAEFFKW
Sbjct: 61  IVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 93

[Close]

BLAST of Lsi02G002090 vs. TrEMBL
Match: A0A061FVJ3_THECC (Reticulon-like protein OS=Theobroma cacao GN=TCM_012437 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 1


Query: 84  SDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVVEY 143
           S+SD++++P  KLFGR RP+H I GGGKVAD+LLW+++ LS  LL+G+T +WFLFEVVEY
Sbjct: 7   SESDNETIPRVKLFGRERPMHSILGGGKVADVLLWRERNLSAALLIGVTAIWFLFEVVEY 66

Query: 144 NFVTLICHLSITSMLIFFIWCTGAEF-----------------FKWYYTSF--------- 203
           NFVTL+CH+SIT+ML+ FIW   A++                 F+   ++F         
Sbjct: 67  NFVTLLCHISITTMLVIFIWGMFADYFGCTRPKIPELLSNEHAFREVVSAFGFLCMETLP 126

Query: 204 YIQIQF-------AGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK 216
           Y+  +F       AG+   +  K YR FD++ L KIPRGPVK+KK
Sbjct: 127 YLYTKFENEVDYHAGQMTRKASKLYRRFDSRVLTKIPRGPVKEKK 171

[Close]

BLAST of Lsi02G002090 vs. TrEMBL
Match: M1A462_SOLTU (Reticulon-like protein OS=Solanum tuberosum GN=PGSC0003DMG400005651 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 80  MSTYS-DSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLF 139
           M+TYS DSD+D  P SKL GR+RPIH + GGGKVADILLW+DK+ SG +L+ + V+WFLF
Sbjct: 1   MATYSSDSDNDLTPTSKLLGRQRPIHSVLGGGKVADILLWRDKRSSGAILIAVAVMWFLF 60

Query: 140 EVVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           EVV+Y FVTL+CH+SIT+MLI FIW  GA+ F W
Sbjct: 61  EVVDYTFVTLLCHVSITTMLIVFIWSAGADIFGW 94

[Close]

BLAST of Lsi02G002090 vs. TrEMBL
Match: K4BM68_SOLLC (Reticulon-like protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.1e-28
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 80  MSTYS-DSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLF 139
           M+TYS DSD+D  P SKL GR+RPIH + GGG+VADILLW+DK+LS  +L+ + V+WFLF
Sbjct: 1   MATYSSDSDNDFEPTSKLLGRQRPIHSVLGGGRVADILLWRDKRLSAAILIAVAVMWFLF 60

Query: 140 EVVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           EVV+Y FVTL+CH+SIT+MLI FIW  GA+ F W
Sbjct: 61  EVVDYTFVTLLCHVSITTMLIVFIWSAGADMFGW 94

[Close]

BLAST of Lsi02G002090 vs. TrEMBL
Match: B9I2J5_POPTR (Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0012s05030g PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 84  SDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVVEY 143
           SDSD+++ P +KLFGR+RPI  + GGG+VA +LLW++KK+S  L  GMT+LWFLFEV EY
Sbjct: 6   SDSDNETTPRTKLFGRQRPIRSVLGGGQVAGVLLWENKKVSAALSFGMTILWFLFEVAEY 65

Query: 144 NFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           NFVTL  H+SIT+MLI FIWCT AEFF W
Sbjct: 66  NFVTLFSHISITAMLIVFIWCTSAEFFNW 94

[Close]

BLAST of Lsi02G002090 vs. TAIR10
Match: AT3G18260.1 (AT3G18260.1 Reticulon family protein)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-27
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 84  SDSDDDSV--PPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVV 143
           SDS+D+      +KLF R+R IH IFGGGKVADILLW++ K++  L++G+++LWFL EVV
Sbjct: 9   SDSEDERTIHKTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVV 68

Query: 144 EYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           EYNF+TLICH S+TSML FFIW T ++F  W
Sbjct: 69  EYNFITLICHASMTSMLFFFIWSTASDFLNW 99

[Close]

BLAST of Lsi02G002090 vs. TAIR10
Match: AT4G11220.1 (AT4G11220.1 VIRB2-interacting protein 2)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-20
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 81  STYSDSDDDSVPPS-------------KLFGRRRPIHEIFGGGKVADILLWKDKKLSGGL 140
           S+ S SDD++   S             +LFGR RP+H++ GGGK ADI +WKDKK+SGG+
Sbjct: 41  SSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGV 100

Query: 141 LLGMTVLWFLFEVVEYNFVTLICHLSITSMLIFFIWCTGAEF 170
             G TV W LFE++EY+ +TL+CH+ I ++ + F+W     F
Sbjct: 101 FGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMF 142

[Close]

BLAST of Lsi02G002090 vs. TAIR10
Match: AT4G23630.1 (AT4G23630.1 VIRB2-interacting protein 1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 95  KLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVVEYNFVTLICHLSI 154
           +LFGR +P+H++ GGGK ADI +WK+KK+SGG+L G T  W +FE++EY+ +TL+CH+ I
Sbjct: 72  RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMI 131

Query: 155 TSMLIFFIWCTGAEF 170
             + + F+W     F
Sbjct: 132 VVLAVLFLWSNATMF 146

[Close]

BLAST of Lsi02G002090 vs. TAIR10
Match: AT5G41600.1 (AT5G41600.1 VIRB2-interacting protein 3)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-18
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 81  STYSDSDDDSVPPS-----------KLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLL 140
           S+ SDSDDD    S           +LFGR +P+H++ GGGK ADI LW++KK+SGG+L 
Sbjct: 26  SSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLG 85

Query: 141 GMTVLWFLFEVVEYNFVTLICHLSITSMLIFFIWCTGAEF 170
            +T  W LFE+ EY+ +  +CH +I ++   F+W     F
Sbjct: 86  AVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTF 125

[Close]

BLAST of Lsi02G002090 vs. TAIR10
Match: AT1G64090.2 (AT1G64090.2 Reticulan like protein B3)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-18
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 61  HSHSIPKPLNKNPSPLSHIMSTYSDSDDDSVPPS------KLFGRRRPIHEIFGGGK--- 120
           H  SI + +++         S+ SDSDDD    S      +LFGR +P+H++FGGGK   
Sbjct: 7   HEESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFGGGKHSE 66

Query: 121 -------------VADILLWKDKKLSGGLLLGMTVLWFLFEVVEYNFVTLICHLSITSML 170
                         ADI LW++KK+SGG+L   TV W LFE++EYN +TL  H+SI ++ 
Sbjct: 67  NQDINERFGLVFAAADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALA 126

[Close]

BLAST of Lsi02G002090 vs. NCBI nr
Match: gi|659066782|ref|XP_008461104.1| (PREDICTED: reticulon-like protein B9 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 9.8e-43
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1


Query: 80  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFE 139
           MS+YSDSDDDSVP SKLFGRRRPIH+IFGGG+VADILLWKDKK+S GLLLGMTVLWFLFE
Sbjct: 1   MSSYSDSDDDSVPRSKLFGRRRPIHDIFGGGRVADILLWKDKKMSAGLLLGMTVLWFLFE 60

Query: 140 VVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           VVEYNFVTLICH+SITSMLIFFIWCTGAEFFKW
Sbjct: 61  VVEYNFVTLICHISITSMLIFFIWCTGAEFFKW 93

[Close]

BLAST of Lsi02G002090 vs. NCBI nr
Match: gi|449439423|ref|XP_004137485.1| (PREDICTED: reticulon-like protein B9 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 84/93 (90.32%), Postives = 90/93 (96.77%), Query Frame = 1


Query: 80  MSTYSDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFE 139
           MS+YSDSDDDSVP SKLFGRRRP+++IFGGG+VADILLWKDKK S GLLLGMTVLWFLFE
Sbjct: 1   MSSYSDSDDDSVPRSKLFGRRRPVYDIFGGGRVADILLWKDKKKSAGLLLGMTVLWFLFE 60

Query: 140 VVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           +VEYNFVTLICHLSITSMLIFFIWCTGAEFFKW
Sbjct: 61  IVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 93

[Close]

BLAST of Lsi02G002090 vs. NCBI nr
Match: gi|590664911|ref|XP_007036602.1| (Reticulon-like protein B9, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 143.3 bits (360), Expect = 5.0e-31
Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 1


Query: 84  SDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLFEVVEY 143
           S+SD++++P  KLFGR RP+H I GGGKVAD+LLW+++ LS  LL+G+T +WFLFEVVEY
Sbjct: 7   SESDNETIPRVKLFGRERPMHSILGGGKVADVLLWRERNLSAALLIGVTAIWFLFEVVEY 66

Query: 144 NFVTLICHLSITSMLIFFIWCTGAEF-----------------FKWYYTSF--------- 203
           NFVTL+CH+SIT+ML+ FIW   A++                 F+   ++F         
Sbjct: 67  NFVTLLCHISITTMLVIFIWGMFADYFGCTRPKIPELLSNEHAFREVVSAFGFLCMETLP 126

Query: 204 YIQIQF-------AGKAISQTKKSYRNFDAKFLNKIPRGPVKDKK 216
           Y+  +F       AG+   +  K YR FD++ L KIPRGPVK+KK
Sbjct: 127 YLYTKFENEVDYHAGQMTRKASKLYRRFDSRVLTKIPRGPVKEKK 171

[Close]

BLAST of Lsi02G002090 vs. NCBI nr
Match: gi|1000954190|ref|XP_015578258.1| (PREDICTED: reticulon-like protein B9 [Ricinus communis])

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 80  MSTY-SDSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLF 139
           MS Y SDSDD++    KLFGR+RPI E+ GGGKVAD+LLWK+K +S  L +GMT++WFLF
Sbjct: 1   MSFYPSDSDDETTSRRKLFGRQRPIREVLGGGKVADVLLWKNKNVSATLTIGMTLIWFLF 60

Query: 140 EVVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           EVVEYNFVTL CH+SIT MLI FIWCTGAEFF W
Sbjct: 61  EVVEYNFVTLFCHISITIMLIVFIWCTGAEFFNW 94

[Close]

BLAST of Lsi02G002090 vs. NCBI nr
Match: gi|565349174|ref|XP_006341572.1| (PREDICTED: reticulon-like protein B9 [Solanum tuberosum])

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 80  MSTYS-DSDDDSVPPSKLFGRRRPIHEIFGGGKVADILLWKDKKLSGGLLLGMTVLWFLF 139
           M+TYS DSD+D  P SKL GR+RPIH + GGGKVADILLW+DK+ SG +L+ + V+WFLF
Sbjct: 1   MATYSSDSDNDLTPTSKLLGRQRPIHSVLGGGKVADILLWRDKRSSGAILIAVAVMWFLF 60

Query: 140 EVVEYNFVTLICHLSITSMLIFFIWCTGAEFFKW 173
           EVV+Y FVTL+CH+SIT+MLI FIW  GA+ F W
Sbjct: 61  EVVDYTFVTLLCHVSITTMLIVFIWSAGADIFGW 94

The following BLAST results are available for this feature:

BLAST of Lsi02G002090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLI_ARATH	6.4e-26	60.44	Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1	[more]
RTNLC_ARATH	8.9e-20	43.48	Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=2 SV=1	[more]
RTNLB_ARATH	4.4e-19	44.12	Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1	[more]
RTNLA_ARATH	1.9e-17	48.00	Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1	[more]
RTNLD_ARATH	5.4e-17	42.00	Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1	[more]

BLAST of Lsi02G002090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTQ2_CUCSA	9.9e-42	90.32	Reticulon-like protein OS=Cucumis sativus GN=Csa_1G042570 PE=4 SV=1	[more]
A0A061FVJ3_THECC	3.5e-31	46.06	Reticulon-like protein OS=Theobroma cacao GN=TCM_012437 PE=4 SV=1	[more]
M1A462_SOLTU	2.1e-28	65.96	Reticulon-like protein OS=Solanum tuberosum GN=PGSC0003DMG400005651 PE=4 SV=1	[more]
K4BM68_SOLLC	8.1e-28	64.89	Reticulon-like protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9I2J5_POPTR	1.4e-27	66.29	Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0012s05030g PE=4 SV=1	[more]

BLAST of Lsi02G002090 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18260.1	3.6e-27	60.44	Reticulon family protein	[more]
AT4G11220.1	2.5e-20	44.12	VIRB2-interacting protein 2	[more]
AT4G23630.1	1.0e-18	48.00	VIRB2-interacting protein 1	[more]
AT5G41600.1	3.1e-18	42.00	VIRB2-interacting protein 3	[more]
AT1G64090.2	4.0e-18	38.17	Reticulan like protein B3	[more]

BLAST of Lsi02G002090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066782\|ref\|XP_008461104.1\|	9.8e-43	92.47	PREDICTED: reticulon-like protein B9 [Cucumis melo]	[more]
gi\|449439423\|ref\|XP_004137485.1\|	1.4e-41	90.32	PREDICTED: reticulon-like protein B9 [Cucumis sativus]	[more]
gi\|590664911\|ref\|XP_007036602.1\|	5.0e-31	46.06	Reticulon-like protein B9, putative isoform 2 [Theobroma cacao]	[more]
gi\|1000954190\|ref\|XP_015578258.1\|	1.9e-30	71.28	PREDICTED: reticulon-like protein B9 [Ricinus communis]	[more]
gi\|565349174\|ref\|XP_006341572.1\|	3.1e-28	65.96	PREDICTED: reticulon-like protein B9 [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044425	membrane part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G002090.1	Lsi02G002090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 112..173 score: 2.3
IPR003388	Reticulon	PROFILE	PS50845	RETICULON	coord: 112..163 score: 12
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 84..172 score: 8.9
None	No IPR available	PANTHER	PTHR10994:SF81	RETICULON-LIKE PROTEIN B15	coord: 84..172 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G002090	Csa1G042570	Cucumber (Chinese Long) v2	culsiB022
Lsi02G002090	CSPI01G06970	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G002090	Cucsa.121710	Cucumber (Gy14) v1	cgylsiB181
Lsi02G002090	CmaCh18G000510	Cucurbita maxima (Rimu)	cmalsiB370
Lsi02G002090	CmoCh18G000410	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G002090	Cla018479	Watermelon (97103) v1	lsiwmB212
Lsi02G002090	MELO3C002107	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G002090	ClCG04G010930	Watermelon (Charleston Gray)	lsiwcgB192
Lsi02G002090	MELO3C002107.2	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G002090	Bhi08G001049	Wax gourd	lsiwgoB238
Lsi02G002090	Cp4.1LG09g11370	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G002090	CsGy1G006800	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G002090	Carg22742	Silver-seed gourd	carlsiB467
Lsi02G002090	CsaV3_1G006910	Cucumber (Chinese Long) v3	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G002090	Bottle gourd (USVL1VR-Ls)	lsilsiB113
Lsi02G002090	Cucumber (Gy14) v1	cgylsiB149
Lsi02G002090	Cucurbita maxima (Rimu)	cmalsiB106
Lsi02G002090	Cucurbita maxima (Rimu)	cmalsiB208
Lsi02G002090	Cucurbita moschata (Rifu)	cmolsiB040
Lsi02G002090	Cucurbita moschata (Rifu)	cmolsiB094
Lsi02G002090	Cucurbita moschata (Rifu)	cmolsiB198
Lsi02G002090	Cucurbita pepo (Zucchini)	cpelsiB294
Lsi02G002090	Cucurbita pepo (Zucchini)	cpelsiB418
Lsi02G002090	Cucurbita pepo (Zucchini)	cpelsiB542
Lsi02G002090	Wild cucumber (PI 183967)	cpilsiB025
Lsi02G002090	Cucumber (Chinese Long) v2	culsiB025
Lsi02G002090	Melon (DHL92) v3.5.1	lsimeB209
Lsi02G002090	Watermelon (Charleston Gray)	lsiwcgB201
Lsi02G002090	Watermelon (97103) v1	lsiwmB223
Lsi02G002090	Cucumber (Gy14) v2	cgyblsiB021
Lsi02G002090	Melon (DHL92) v3.6.1	lsimedB216
Lsi02G002090	Silver-seed gourd	carlsiB353
Lsi02G002090	Silver-seed gourd	carlsiB538
Lsi02G002090	Silver-seed gourd	carlsiB724
Lsi02G002090	Cucumber (Chinese Long) v3	cuclsiB024
Lsi02G002090	Watermelon (97103) v2	lsiwmbB184
Lsi02G002090	Watermelon (97103) v2	lsiwmbB195