Lsi02G001460 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G001460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPHD and RING finger domain-containing protein 1
Locationchr02 : 1196001 .. 1199685 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCGGAATCGTTTTCTCATTTCTCACGCTCGCAAATTTATTTTATTTTTTCCTTATTTCGAAAAAGTTTTATTTTATTTTTTCCTGTTTTTAATCTTTTCGAGAAATGGATAATAAAATATCGAGAACGAGAACGGCGATTCCGTCTGAACTCTTTCGCCGGAATTAATCGGGGCGGTCCGGCCACTCTGCCACTCATCGACGATGACGGACGACTCAACTAACTCCGTCGTCTCTCCAGAAGATCGGATAAAAACTCTAATTTATTGTCCTTCCGCGACCGCGAGTACGAAATCCGGGATCGAAAACGAATCTTTAGGTGGATTTGATGAAAATCAGCAGCTGATAGACGATAATCCTTCTATCTGTGTAATTTGCTTGTCGGACGATGGAAAAGCGGAGAGAGGTAAGCTTGATTCCTGTGACCATTATTTTTGCTACGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGTAGGTTCACTGTTGTTCATAGAATTGCGAAGGATGCCTGTCGTCTCCGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGTCGGTAATTCTGTAATTGACATTTTACTGCTTGATTGTGCTCGAAGATTGACATTTAGCTTTTCTAGGGTTCTAGGGATGCGATTTTTGTTGGTTGAATATCGTGTGCTTAACTTTTATGAATTTGGGAATTTTTCGCTTTAGATGTGATGCCATTGACAATATGCTTGACTACAAGTATCAGTCTGATTTTAGTTTGAATAATGCAATGTAAACTCTCTGCAAGTATAAGTCTTCTTTTTCTGTTGAAGCTTGTAGTTATAGGAACAAATTTTCCTATAATTACGTTTGATTGTATTGAACTATGTAGAAAATTTGAGGGCGCTTGCTTCGTTTTCAGGTTATGGTCGAAATAGATACACTTTTGCATCTCTACCACATCCATGACTCTTTCTCCTGTCATTTACTTGTTCGAATAGCAATGGCAGAAGTCTTTAAACGATTAAGAATTTTTCCTTTTATAGGGTAAAATTGCTTAAGATATATTATTATCTGGGTATTGAAACATAAATATGATAGGTATCTATATAGTTACCTCCTCACCATAAATATTTCAGTCTCTCAAGCACATTTTCGAAACTTGAACGAACATCTAAGACCCCATTTGATAATCAGTCTCATTTTTTGTTTTCCGTTTATTATACATGTTCATCACAAGTTTTTTTTCTCCTCTCTGGGAGACAAGCTTTTCACTTTCTTTGAAAACACACATTGGAATTTTGAGCCAAATTTAAAAGACAACTCAAGTTTTCAAAAACTACTTTCTTTTCTAATTTTTAAAATTTGGCTTGATTTTTTGAAATGTTAAAAAAAAAAAGTAATAAAGTAAGAAAACTGTGTTTATAAGCTTAATTCTTAAACAGAAAACAAAATCAAAATGGTTATTAAATGACCTTAAATTTTCTAATATTCGTTTTAAGCTTAATTTTAAAAAATCTTGAAATTTCTAAAGCTTGTTTTGTGTTTCTCCTGAAATATAGTTCCAAATTGGGTGTAGAAATCCGCATAGTTTCACAAGCTTTTAACTTTACTGGTTCCAGGATCACTCTGCTTCTGGAAATACTAGGATTAGGGATCCATATGCAGAAACGTGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACGTATTGTGTCGGCCTTGGTGCTAATGTACCGGAAGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGGCTCAACATACTGATACTGAATTGGATACCAGTTTCAACGATCAAAATCAAACGGCAACAGTTCAAGCACACGTTGCCATTTCCGACATAGTAAAAGAATCAAGTGCTCAAACAGTTGCCATAACTCGCAGCGTGGCCCAGAAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACATTACATCGTTGTCGCAGCATCCATAGCCATATAAGGGCATTACGTGATAATTGGGATGCTTTACGAGGGGGTTCACTGAACTTTCCCGCTAGCAGCTCATCGACATATTGCGGCAACAGTTCTAAACAAAATAGTGGTGCTGCACTAGACAACCAAACAGGTCAACCCCATTTTTCGACAGCCATTAGCTTGCAGGCGACCTCCGGACCAGAGTGTAACGAAAGCTCTTATGATGTTGAGAAGGCATGGCGGATGATGGAAATTGCAAAGGCAAAGGCTATACGTGCGGGAGATCAAACCTTGCGACATCCTGCTAGCAGACAAATGAGCACAAAAACAAAAGATTCTCATACAATGAAATGTCAACAGTACAAAATCAAGAAGCCAAATGAGCCAGCGAAGCATAAAAAGGAAGTGGGAAAGGAAAGATTGCTCGAGTTGGATAAGCAACTGTGTCATCCAGTAGCGAGTAAGAAGAATAAAACTTCTGATAAGTTTTGCCCTACAAATTCATCCAGTTATGGAGAATCTTCCTTGGGTAATATGGTTCAGACTTGTCGAGGTGATTTCAACTATGAAAATAGAAGAAAGCCATCAAACAAAATGGTGGATGAACTTTCATCATCCTCCACAATGACACAAGCCTCGGAAAAACGCCATCCTGCTCGTGAGGCTGGCAATGATCACGATGCCAAAAGTGAGATACGAACACTGGTCAAGATCAATCTAAAACTCCTAAGCCAAGACAAAAATTTGGGTACTGCCTCATATTCTTTGCTACCCCATTGCCATTAGTTTGATGTGCAATTATCTTGTAACAGTATTATGTTGAGTGGAGTAATAATTAGTTAAGATTTATGCAGGATATGAAAGATACAAGGAAGTGGCAAGGCTTGCAACACACACCATTATGGCAGGATGTGGTTTAGAACCCCCTCCAAAACCCAGCAAGCGATTCTTATCGTGCTCAGTTTGCAGACATACAGAAGAAGAAATCCAGCAGCTTCACAGGTCGACTCTGATGCCAAATTCTTGCAGGGAATGCTTCCTGGCATTCGTGAAGGATGTTGTTAATGCCATAATGTTAGAAAAACTAGTGGTGGGTTCCTCTTCCTAAGGCTGTAAAGTAACTAAATTATGTGTATTATTAACCAGAAGAGTTAGGAGAGAGGACAGAATGGAAGCAGAGAGTTGAAAATAAGTGGGGTTAGAAGAAGAAGAAGAAGAAGGCCAAAATGGAAGGACTTGGCTTATCCAATGGAGAGGGAAATTGGCGTGGCGCTCCATTGTTGTATGGTGGGGCTAAGGCTGATGTGAAAATGCTTTGTGCTTTGCTGTGGAGTCCCTGTGAAAGCACTCAGAAAAGCACTTGCGACAAGATCACGTGACTTTCGAGAACGTCAGCAGAAGATGGACATGGACATTGGCTTTTTGTTGGTATTCTTGCATCTCTCTTCACACTTTTTTTGTCTGTAAATAACTATTTGTATTCTTATTAGTTTAGTATTACAAATTACTGTGTCTAATTGATCCTCTAACAAAGATGAGAGATCATTTGCATTCTGAATTTAATAAAATTTTGGCATTCCAATTTTGGAAAAATGTTTCAAAATTGAAAGCTTATAAATGAGTTAGATTCGGAAGCTAATTGACTTATTAGGTACAAAATTAAAAATTT

mRNA sequence

AAATCGGAATCGTTTTCTCATTTCTCACGCTCGCAAATTTATTTTATTTTTTCCTTATTTCGAAAAAGTTTTATTTTATTTTTTCCTGTTTTTAATCTTTTCGAGAAATGGATAATAAAATATCGAGAACGAGAACGGCGATTCCGTCTGAACTCTTTCGCCGGAATTAATCGGGGCGGTCCGGCCACTCTGCCACTCATCGACGATGACGGACGACTCAACTAACTCCGTCGTCTCTCCAGAAGATCGGATAAAAACTCTAATTTATTGTCCTTCCGCGACCGCGAGTACGAAATCCGGGATCGAAAACGAATCTTTAGGTGGATTTGATGAAAATCAGCAGCTGATAGACGATAATCCTTCTATCTGTGTAATTTGCTTGTCGGACGATGGAAAAGCGGAGAGAGGTAAGCTTGATTCCTGTGACCATTATTTTTGCTACGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGTAGGTTCACTGTTGTTCATAGAATTGCGAAGGATGCCTGTCGTCTCCGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGATCACTCTGCTTCTGGAAATACTAGGATTAGGGATCCATATGCAGAAACGTGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACGTATTGTGTCGGCCTTGGTGCTAATGTACCGGAAGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGGCTCAACATACTGATACTGAATTGGATACCAGTTTCAACGATCAAAATCAAACGGCAACAGTTCAAGCACACGTTGCCATTTCCGACATAGTAAAAGAATCAAGTGCTCAAACAGTTGCCATAACTCGCAGCGTGGCCCAGAAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACATTACATCGTTGTCGCAGCATCCATAGCCATATAAGGGCATTACGTGATAATTGGGATGCTTTACGAGGGGGTTCACTGAACTTTCCCGCTAGCAGCTCATCGACATATTGCGGCAACAGTTCTAAACAAAATAGTGGTGCTGCACTAGACAACCAAACAGGTCAACCCCATTTTTCGACAGCCATTAGCTTGCAGGCGACCTCCGGACCAGAGTGTAACGAAAGCTCTTATGATGTTGAGAAGGCATGGCGGATGATGGAAATTGCAAAGGCAAAGGCTATACGTGCGGGAGATCAAACCTTGCGACATCCTGCTAGCAGACAAATGAGCACAAAAACAAAAGATTCTCATACAATGAAATGTCAACAGTACAAAATCAAGAAGCCAAATGAGCCAGCGAAGCATAAAAAGGAAGTGGGAAAGGAAAGATTGCTCGAGTTGGATAAGCAACTGTGTCATCCAGTAGCGAGTAAGAAGAATAAAACTTCTGATAAGTTTTGCCCTACAAATTCATCCAGTTATGGAGAATCTTCCTTGGGTAATATGGTTCAGACTTGTCGAGGTGATTTCAACTATGAAAATAGAAGAAAGCCATCAAACAAAATGGTGGATGAACTTTCATCATCCTCCACAATGACACAAGCCTCGGAAAAACGCCATCCTGCTCGTGAGGCTGGCAATGATCACGATGCCAAAAGTGAGATACGAACACTGGTCAAGATCAATCTAAAACTCCTAAGCCAAGACAAAAATTTGGGATATGAAAGATACAAGGAAGTGGCAAGGCTTGCAACACACACCATTATGGCAGGATGTGGTTTAGAACCCCCTCCAAAACCCAGCAAGCGATTCTTATCGTGCTCAGTTTGCAGACATACAGAAGAAGAAATCCAGCAGCTTCACAGGTCGACTCTGATGCCAAATTCTTGCAGGGAATGCTTCCTGGCATTCGTGAAGGATGTTGTTAATGCCATAATGTTAGAAAAACTAGTGGTGGGTTCCTCTTCCTAAGGCTGTAAAGTAACTAAATTATGTGTATTATTAACCAGAAGAGTTAGGAGAGAGGACAGAATGGAAGCAGAGAGTTGAAAATAAGTGGGGTTAGAAGAAGAAGAAGAAGAAGGCCAAAATGGAAGGACTTGGCTTATCCAATGGAGAGGGAAATTGGCGTGGCGCTCCATTGTTGTATGGTGGGGCTAAGGCTGATGTGAAAATGCTTTGTGCTTTGCTGTGGAGTCCCTGTGAAAGCACTCAGAAAAGCACTTGCGACAAGATCACGTGACTTTCGAGAACGTCAGCAGAAGATGGACATGGACATTGGCTTTTTGTTGGTATTCTTGCATCTCTCTTCACACTTTTTTTGTCTGTAAATAACTATTTGTATTCTTATTAGTTTAGTATTACAAATTACTGTGTCTAATTGATCCTCTAACAAAGATGAGAGATCATTTGCATTCTGAATTTAATAAAATTTTGGCATTCCAATTTTGGAAAAATGTTTCAAAATTGAAAGCTTATAAATGAGTTAGATTCGGAAGCTAATTGACTTATTAGGTACAAAATTAAAAATTT

Coding sequence (CDS)

ATGACGGACGACTCAACTAACTCCGTCGTCTCTCCAGAAGATCGGATAAAAACTCTAATTTATTGTCCTTCCGCGACCGCGAGTACGAAATCCGGGATCGAAAACGAATCTTTAGGTGGATTTGATGAAAATCAGCAGCTGATAGACGATAATCCTTCTATCTGTGTAATTTGCTTGTCGGACGATGGAAAAGCGGAGAGAGGTAAGCTTGATTCCTGTGACCATTATTTTTGCTACGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGTAGGTTCACTGTTGTTCATAGAATTGCGAAGGATGCCTGTCGTCTCCGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGATCACTCTGCTTCTGGAAATACTAGGATTAGGGATCCATATGCAGAAACGTGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACGTATTGTGTCGGCCTTGGTGCTAATGTACCGGAAGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGGCTCAACATACTGATACTGAATTGGATACCAGTTTCAACGATCAAAATCAAACGGCAACAGTTCAAGCACACGTTGCCATTTCCGACATAGTAAAAGAATCAAGTGCTCAAACAGTTGCCATAACTCGCAGCGTGGCCCAGAAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACATTACATCGTTGTCGCAGCATCCATAGCCATATAAGGGCATTACGTGATAATTGGGATGCTTTACGAGGGGGTTCACTGAACTTTCCCGCTAGCAGCTCATCGACATATTGCGGCAACAGTTCTAAACAAAATAGTGGTGCTGCACTAGACAACCAAACAGGTCAACCCCATTTTTCGACAGCCATTAGCTTGCAGGCGACCTCCGGACCAGAGTGTAACGAAAGCTCTTATGATGTTGAGAAGGCATGGCGGATGATGGAAATTGCAAAGGCAAAGGCTATACGTGCGGGAGATCAAACCTTGCGACATCCTGCTAGCAGACAAATGAGCACAAAAACAAAAGATTCTCATACAATGAAATGTCAACAGTACAAAATCAAGAAGCCAAATGAGCCAGCGAAGCATAAAAAGGAAGTGGGAAAGGAAAGATTGCTCGAGTTGGATAAGCAACTGTGTCATCCAGTAGCGAGTAAGAAGAATAAAACTTCTGATAAGTTTTGCCCTACAAATTCATCCAGTTATGGAGAATCTTCCTTGGGTAATATGGTTCAGACTTGTCGAGGTGATTTCAACTATGAAAATAGAAGAAAGCCATCAAACAAAATGGTGGATGAACTTTCATCATCCTCCACAATGACACAAGCCTCGGAAAAACGCCATCCTGCTCGTGAGGCTGGCAATGATCACGATGCCAAAAGTGAGATACGAACACTGGTCAAGATCAATCTAAAACTCCTAAGCCAAGACAAAAATTTGGGATATGAAAGATACAAGGAAGTGGCAAGGCTTGCAACACACACCATTATGGCAGGATGTGGTTTAGAACCCCCTCCAAAACCCAGCAAGCGATTCTTATCGTGCTCAGTTTGCAGACATACAGAAGAAGAAATCCAGCAGCTTCACAGGTCGACTCTGATGCCAAATTCTTGCAGGGAATGCTTCCTGGCATTCGTGAAGGATGTTGTTAATGCCATAATGTTAGAAAAACTAGTGGTGGGTTCCTCTTCCTAA

Protein sequence

MTDDSTNSVVSPEDRIKTLIYCPSATASTKSGIENESLGGFDENQQLIDDNPSICVICLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVNIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESSAQTVAITRSVAQKSLPSRGGKAAGTSARTLHRCRSIHSHIRALRDNWDALRGGSLNFPASSSSTYCGNSSKQNSGAALDNQTGQPHFSTAISLQATSGPECNESSYDVEKAWRMMEIAKAKAIRAGDQTLRHPASRQMSTKTKDSHTMKCQQYKIKKPNEPAKHKKEVGKERLLELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSLGNMVQTCRGDFNYENRRKPSNKMVDELSSSSTMTQASEKRHPAREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVARLATHTIMAGCGLEPPPKPSKRFLSCSVCRHTEEEIQQLHRSTLMPNSCRECFLAFVKDVVNAIMLEKLVVGSSS
Homology
[Close]
BLAST of Lsi02G001460 vs. Swiss-Prot
Match: PHRF1_RAT (PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 8.9e-14
Identity = 64/234 (27.35%), Postives = 101/234 (43.16%), Query Frame = 1 

Query: 12  PEDRIKTL-----IYCPSATASTKSGIENESLGGFDENQQLIDDNPSICVICLSDDGKAE 71
           PEDR  +      I  P+A   T+  +E  S    D       D+   C ICL+      
Sbjct: 68  PEDRSGSEDSEDGIEVPTAAVETQRKLEASSTPNSD-------DDAESCPICLNAFRDQA 127

Query: 72  RGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVNIPMRNQDH 131
            G  ++C HYFC  CI+EW+R  + CP  +  F  +   A+   ++ ++   IP+ N   
Sbjct: 128 VGTPETCAHYFCLDCIIEWSRNANSCPVDRTIFKCICIRAQFNGKILKK---IPVENTRA 187

Query: 132 SASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLG-ANVPEGDWFCHD 191
                    DP   T C VC   + E  +LLCD CD+  H  C+      VP  +WFC +
Sbjct: 188 CEDEEAEEEDP---TFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPE 247

Query: 192 CTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESS--AQTVAITRSVAQ 238
           C +     T        +D    +  +  + ++D+V  +S     V  TR++A+
Sbjct: 248 CAVPGVDPT--------HDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIAR 280

[Close]
BLAST of Lsi02G001460 vs. Swiss-Prot
Match: PHRF1_MOUSE (PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-13
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 1 

Query: 49  DDNPSICVICLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKD 108
           DD+   C ICL+       G  ++C HYFC  CI+EW+R  + CP  +  F  +   A+ 
Sbjct: 103 DDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRTVFKCICIRAQF 162

Query: 109 ACRLRERIVNIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTY 168
             ++ ++   IP+ N   + +      DP   T C VC   + E  +LLCD CD+  H  
Sbjct: 163 NGKILKK---IPVEN---TKACEAEEEDP---TFCEVCGRSDREDRLLLCDGCDAGYHME 222

Query: 169 CVGLG-ANVPEGDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESS-- 228
           C+      VP  +WFC +CT+     T        +D    +  +  + ++D+V  +S  
Sbjct: 223 CLDPPLQEVPVDEWFCPECTVPGVDPT--------HDAAPVSDEEVSLLLADVVPTTSRL 277

Query: 229 AQTVAITRSVAQ 238
              V  TR++A+
Sbjct: 283 RPRVGRTRAIAR 277

[Close]
BLAST of Lsi02G001460 vs. Swiss-Prot
Match: PHRF1_HUMAN (PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 5.8e-13
Identity = 47/152 (30.92%), Postives = 71/152 (46.71%), Query Frame = 1 

Query: 36  ESLGGFDENQQLIDDNPSICVICLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPAC 95
           E+ G F+      DD+   C ICL+       G  ++C HYFC  CI+EW++  + CP  
Sbjct: 94  EAAGSFNS-----DDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVD 153

Query: 96  KGRFTVVHRIAKDACRLRERIVNIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLM 155
           +  F  +   A+   ++  +   IP+ N       +    DP   T C VC   + E  +
Sbjct: 154 RTLFKCICIRAQFGGKILRK---IPVEN----TKASEEEEDP---TFCEVCGRSDREDRL 213

Query: 156 LLCDLCDSAAHTYCVGLG-ANVPEGDWFCHDC 187
           LLCD CD+  H  C+      VP  +WFC +C
Sbjct: 214 LLCDGCDAGYHMECLDPPLQEVPVDEWFCPEC 230

[Close]
BLAST of Lsi02G001460 vs. Swiss-Prot
Match: YQF7_SCHPO (PHD and RING finger domain-containing protein C126.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.07c PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.9e-13
Identity = 47/168 (27.98%), Postives = 74/168 (44.05%), Query Frame = 1 

Query: 50  DNPSICVICLSDDGKAERGKLDS--------------------CDHYFCYVCIMEWARIE 109
           D+   C+ICLS+       + DS                    C HYF   C+  W R+ 
Sbjct: 13  DSSEECIICLSNLPNCPLDQWDSSSVPASISSTLDGLRIAKIPCGHYFHNHCLESWCRVA 72

Query: 110 SRCPACKGRFTVVHRIAKDACRLRERIVNIPMRNQDHSASGNTRIRDPYAETC-CTVCKG 169
           + CP C+  F  V  + +       R   +  + Q  + +G     D  +ETC C +C  
Sbjct: 73  NTCPLCRTEFLKVD-VLEFVKGPWYRAYPVEEKTQSVANAGEP-FEDEGSETCRCVICGR 132

Query: 170 MEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCTISRAQHTDT 197
            +   ++LLCD CD A HTYC+ + A VP  +++C +C +   Q  +T
Sbjct: 133 SDHAEVLLLCDGCDDAYHTYCLNMDA-VPIEEFYCPNCVLLNYQENET 177

[Close]
BLAST of Lsi02G001460 vs. Swiss-Prot
Match: IRC20_YEAST (Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-07
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 1 

Query: 48   IDDNPSI-CVICLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRI- 107
            ++DN  + C ICL   G+ E G +  C HYFC  CI+ W R  S+CP CKG F  +  + 
Sbjct: 1231 LNDNQILSCSICL---GEVEIGAIIKCGHYFCKSCILTWLRAHSKCPICKG-FCSISEVY 1290

Query: 108  ---AKDACRLRERIVNIPMRNQDHSASGNT 133
                K++   RE+ +  P R    S+  N+
Sbjct: 1291 NFKFKNSTEKREKEIQEPRREGADSSQDNS 1316

[Close]
BLAST of Lsi02G001460 vs. TrEMBL
Match: A0A0A0LQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039990 PE=4 SV=1)

HSP 1 Score: 930.6 bits (2404), Expect = 9.2e-268
Identity = 484/615 (78.70%), Postives = 531/615 (86.34%), Query Frame = 1 

Query: 1   MTDDSTNSVVSP-EDRIKTLIYCPSATASTKSGIENESL-GGFDENQQLIDDNPS-ICVI 60
           M DDSTNS  S  EDR+K LI CPSA+A  K G E E L GGF+E+  LIDDNPS ICVI
Sbjct: 48  MADDSTNSFASSSEDRLKALISCPSASA--KFGNEEEFLEGGFEESHLLIDDNPSSICVI 107

Query: 61  CLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIV 120
           C S+DGKAERGKLDSCDHYFC+VCIMEWARIESRCPACKGRFTVVHRIAKD CRLRERIV
Sbjct: 108 CFSEDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIV 167

Query: 121 NIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVP 180
           NIPMRNQD SASG+ RI DPYAETCCTVCKGMEDEGLMLLCDLCDSAAHT+CVGLGANVP
Sbjct: 168 NIPMRNQDQSASGSARIGDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGANVP 227

Query: 181 EGDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESSAQTVAITR---- 240
           EGDW+CHDCTI+RAQHTDTELDTSF  QNQT TV+  +AISDIVKESSAQTV+ITR    
Sbjct: 228 EGDWYCHDCTIARAQHTDTELDTSFIKQNQTTTVEPRIAISDIVKESSAQTVSITRRGAL 287

Query: 241 ----------------SVAQKSLPSRGGKAAGTSARTLHRCRSIHSHIRALRDNWDALRG 300
                           SVAQKSLPSRGGKAAGTSARTLHRCR+IHS+IRALRDNWDA+R 
Sbjct: 288 LHSNREPPSIVPSSRRSVAQKSLPSRGGKAAGTSARTLHRCRNIHSYIRALRDNWDAVRK 347

Query: 301 GSLNFPASSSSTYCGNSSKQNSGAA--LDNQTGQPHFSTAISLQATSGPECNESSYDVEK 360
           GSL FPASSSSTYCGNSSK+++G A  ++ QT QPH   AISLQAT+ PE N +S DVEK
Sbjct: 348 GSLRFPASSSSTYCGNSSKRDTGGAELINKQTNQPH---AISLQATTLPESNGNSCDVEK 407

Query: 361 AWRMMEIAKAKAIRAGDQTLRHPASRQMSTKTKDSHTMKCQQYKIKKPNEPAKHKKEVGK 420
           AWRMMEIAKAK+IR GDQTLRHP SRQ++TKTKDSHT K QQYKIKKP+EPAKHKKE+GK
Sbjct: 408 AWRMMEIAKAKSIREGDQTLRHPVSRQITTKTKDSHTAKGQQYKIKKPDEPAKHKKEMGK 467

Query: 421 ERLLELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSLGNMVQTCRGDFNYENRRKPSNK 480
           +RLLELDKQLC PVASKKNK SD+F PT+SSS GE  LG MVQT  GDF+ ENRRKPSNK
Sbjct: 468 QRLLELDKQLCRPVASKKNKASDEFFPTHSSSNGEFPLGKMVQTGGGDFHCENRRKPSNK 527

Query: 481 MVDELSSSSTMTQASEKRHPAREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVA 540
           +VDE+SSSSTMTQAS+K H AREAG+DHD KSEIRTLVKINLKLLSQ KNLGYERYKEV 
Sbjct: 528 IVDEVSSSSTMTQASDKHHSAREAGSDHDGKSEIRTLVKINLKLLSQGKNLGYERYKEVT 587

Query: 541 RLATHTIMAGCGLEPPPKPSKRFLSCSVCRHTEEEIQQLHRSTLMPNSCRECFLAFVKDV 591
           RLATHTIMA CGLEPPPKP+K+++S SVC+HTEEEI++LHRSTLMP+SCR+CF+ FVKDV
Sbjct: 588 RLATHTIMARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDV 647

[Close]
BLAST of Lsi02G001460 vs. TrEMBL
Match: D7SIQ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04770 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 3.8e-96
Identity = 252/659 (38.24%), Postives = 348/659 (52.81%), Query Frame = 1 

Query: 11  SPEDRIKTLIYCPSATASTKSGIENE-SLGGFDENQQLIDDNPSICVICLSDDGKAERGK 70
           SP  R  + I    A +S    + ++ S     + ++ +D + + C ICL +D +A RG 
Sbjct: 8   SPRQRSDSAIEYRIAMSSDSETLGSDISANQCPKAKEAVDFDSNCCGICLLEDDRAIRGW 67

Query: 71  LDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVNIPMRNQDHSAS 130
           +DSCDHYFC+VCIMEWA++ESRCP CK RF+ + R  K      ERIVN+P+R+Q +   
Sbjct: 68  VDSCDHYFCFVCIMEWAKVESRCPMCKRRFSTIRRPPKPGVFPSERIVNVPVRDQAYHHF 127

Query: 131 GN--TRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCT 190
           GN  T   DPYAE  C +C G  DE  +L+CDLCDSAAHTYCVGLG  VPEGDWFCHDCT
Sbjct: 128 GNVTTGPSDPYAEVDCGICHGTADESFLLICDLCDSAAHTYCVGLGHTVPEGDWFCHDCT 187

Query: 191 ISRAQHTDTELDTSFNDQN------QTATVQAHVAISDIVKESSAQTVAITRSVAQKSLP 250
           +SRA+H + E+D  F+D+N      +  + + HV+I DIV E   +      S+   S P
Sbjct: 188 VSRAEHANGEIDAVFDDRNNFRNFYRKPSAETHVSICDIVAEPYTREDERPPSIG-SSHP 247

Query: 251 SR--------------GGKAAGTSARTLHRCRSIHSHIRALRDNWDALRGGSLNFPASSS 310
           +R                 ++ + ARTL RCR++++HI+ALR+NW+ALR GS+ F +   
Sbjct: 248 NRPSSPIALNSENFAVNNSSSMSVARTLLRCRNVNAHIQALRENWNALRSGSMTFSSILG 307

Query: 311 STYCGNSSKQNSGAALDNQTGQPHFSTAISLQATSGPECNESSYDVEKAWRMMEIAKAKA 370
            +   +S K N GA+   Q                  + N  SYD EKAW+MM+  KAK+
Sbjct: 308 DSGGESSQKYNVGASCPKQ------------------DNNACSYDTEKAWKMMD--KAKS 367

Query: 371 I-RAGDQT-LRHPASRQMSTKT---KDSHTMKCQQYKIKKPNEPAKHKKEVG---KERLL 430
           I RA ++T + H  S+    K    K+   +K         N      K+ G   K   L
Sbjct: 368 IQRACERTGIIHQVSKHPLGKVNVPKEVANVKSS----SATNNRQLGNKDFGWHFKHHSL 427

Query: 431 ELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSL------------GNMVQTC-RGDFNY 490
           E D +   P  S +N+   +   T    + ESSL                +T  + D ++
Sbjct: 428 ETDNKRYKPQKS-ENQEQGRVTRTGIPKFTESSLTIHSLVSFDSPSSRKAETSFQVDVHH 487

Query: 491 ENRRKPSNK-MVDELSS--------SSTMTQASEKRHP---------------------- 550
               +PS K +VD  ++        S  +      R P                      
Sbjct: 488 RTGVRPSQKNLVDSFNAINERDGYGSLIIPDGPVPRSPDLSHANLKFGASSLCKEDLLHR 547

Query: 551 ----------AREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVARLATHTIMAG 585
                       +A  D DAKSEI++LVK+NLKL+S+DK LG + +KEVARLATHTI+A 
Sbjct: 548 PKGRVEIGSAKNKARRDDDAKSEIQSLVKLNLKLISKDKQLGVDTFKEVARLATHTILAA 607

[Close]
BLAST of Lsi02G001460 vs. TrEMBL
Match: A0A061FYS4_THECC (RING/U-box protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014395 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.6e-94
Identity = 256/682 (37.54%), Postives = 362/682 (53.08%), Query Frame = 1 

Query: 1   MTDDSTNSVVSPEDRIKTLIYCPSATASTKSGIENESLGGFDENQQLIDDNPSI-CVICL 60
           M  DST+   SP    +  I  P++    KS I++ES G   +  +  DD+ S  C ICL
Sbjct: 1   MAGDSTSDSPSPSPNKRLKITTPNS----KSIIQDESSGHHLQQSRDDDDSDSDKCGICL 60

Query: 61  SDDGK-AERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVN 120
           SD G+ A RGK+DSCDH+FC+VCIMEWA++ESRCP CK RFT + R  K+A    ER+VN
Sbjct: 61  SDGGRRAIRGKIDSCDHFFCFVCIMEWAKVESRCPMCKRRFTAIRRPPKEAVFTSERVVN 120

Query: 121 IPMRNQDHSASGNTRIR--DPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANV 180
           IP R+Q +   GN      DPYAE  C+VC G+ DE L+LLCDLCDSAAHTYCVGLGA V
Sbjct: 121 IPQRDQVYHLCGNATSGPFDPYAEVKCSVCHGIADESLLLLCDLCDSAAHTYCVGLGATV 180

Query: 181 PEGDWFCHDCTISRAQHTDTELDTSFNDQNQTAT------VQAHVAISDIVKESSAQTVA 240
           P+GDWFCHDC +SR++H  TE+DT  +++  +         +A+V+I  IV+ S+    +
Sbjct: 181 PDGDWFCHDCALSRSEHEKTEVDTDTDNKMISGNSHVKLLAEANVSIFKIVRGSNIPVFS 240

Query: 241 ITRSVAQKSLPS-----------------------RGGKAAGTS----ARTLHRCRSIHS 300
              + +  SLP+                       R G   G S    ARTL  CR++HS
Sbjct: 241 -GHNASVSSLPTYLPPPLVPKRERNAVDKVSGPIERSGNTMGNSTEPGARTLGLCRNVHS 300

Query: 301 HIRALRDNWDALRGGSLNFPASSSSTYCGNSSKQNSGAALDN----QTGQPHFSTAISLQ 360
            I+ALR+NW +L+  SL+F  SSS    G  S++    AL +     + +P  S++ S Q
Sbjct: 301 RIQALRENWHSLQSRSLSF--SSSMVESGGGSRRKGTLALTSVSNYSSSEPQSSSSTSQQ 360

Query: 361 ATSG---PECNESSYDVEKAWRMMEIAKA-----KAIRAGDQTLRHP----ASRQMSTKT 420
           +TS     E     YD +KAW+MM IAK+     K   + +QT   P    ++ + +  +
Sbjct: 361 STSQNGFVEPKVDLYDTDKAWKMMNIAKSMQKNCKRNSSLNQTSTKPPCLGSALKEAISS 420

Query: 421 KDSHTMKCQQYKIKKPNEPAK--------HKKEVGKERLLELDKQLCHPVASKKNKT--- 480
              H  + QQ + +      K        H+ E  K +  E+DKQ    ++ + ++    
Sbjct: 421 SGLHISQIQQIETRNEERTGKQMHYRYYYHETEKEKHKSPEMDKQKRMVMSIQSSERVVT 480

Query: 481 --SDKFCPTNSSS----YGESSLGNMVQTCRGDFNYENRRKPSNKMVDELSSSSTMTQAS 540
             S +F P++SS+      +    N V+    +   + +   SN   D   S ST +  S
Sbjct: 481 SHSPRFSPSSSSTKFQIQNDDCHVNGVRPIVKNAQNKCQESSSNANKDGGYSCSTSSAGS 540

Query: 541 EKRHPAREAGND-----------------------------HDAKSEIRTLVKINLKLLS 584
             R       ++                              + K EI++LVK+NLKLL+
Sbjct: 541 VLRGSTDSLDSNLEFGVSILDILERRTRLEKSCSKSKDRRDDNVKCEIQSLVKLNLKLLN 600

[Close]
BLAST of Lsi02G001460 vs. TrEMBL
Match: A0A0D2PV68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G066400 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.0e-93
Identity = 261/692 (37.72%), Postives = 362/692 (52.31%), Query Frame = 1 

Query: 1   MTDDSTNSVVSPED--RIKTLIYCPSATASTKSGIENESLGGFDENQQLI-------DDN 60
           M  DST    SP    R+KT         S+KS IE+E        QQ         D +
Sbjct: 15  MAGDSTTEFPSPSPNKRLKT---------SSKSIIEDEPGNHHQPEQQRQQQAADDDDSD 74

Query: 61  PSICVICLSDDGK-AERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDAC 120
           P IC ICLSD G+ A RGK++SCDH+FC+VCIMEWA++ESRCP CK RFTV+HR  K+  
Sbjct: 75  PEICGICLSDGGRRAVRGKINSCDHFFCFVCIMEWAKVESRCPMCKRRFTVIHRPPKEGV 134

Query: 121 RLRERIVNIPMRNQDHSASGNTR--IRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTY 180
              +R+VNIP R+Q +  SGN    + DPY+E  C++C GM DE L+LLCDLCDSAAHTY
Sbjct: 135 FASQRLVNIPQRDQVYHLSGNATSGLSDPYSEVKCSMCHGMTDESLLLLCDLCDSAAHTY 194

Query: 181 CVGLGANVPEGDWFCHDCTISRAQHTDTELDTSFNDQ------NQTATVQAHVAISDIVK 240
           CVGLGA VP+GDWFCHDC +SR++H  T++DT  ++       N     +  V+I DIV+
Sbjct: 195 CVGLGATVPDGDWFCHDCALSRSEHEKTDVDTETDNHMIAANYNVQLPSEEDVSIFDIVR 254

Query: 241 ESSAQTV---------------------AITRSVAQKSLPSRG--GKAAGTSARTLHRCR 300
           +S+   +                       +    + S PSR   GK+  + ARTL RCR
Sbjct: 255 DSNITPLEGHNASVSSCSNHSPPSIIPGCESSGADEVSRPSRNTVGKSTESGARTLRRCR 314

Query: 301 SIHSHIRALRDNWDALRGGSLNFPASSSSTYCGNSSKQNSGAALDNQTGQPHFSTAISLQ 360
           ++ S I+ LR+NW AL+  SL+F +  + +  G+  K    A  +  + +   S + S Q
Sbjct: 315 NVQSRIQVLRENWRALQNRSLSFSSRMAESGGGSCGKGKVAAVCNPGSSESQPSISTSQQ 374

Query: 361 AT---SGPECNESSYDVEKAWRMMEIAKA--KAIRAGDQTLRHP-------ASRQMSTKT 420
           +T   S  +  E  YD++KAW+MM IAK+  K  +  +   R+        ++ + + ++
Sbjct: 375 STSRDSSIQPKEDLYDIDKAWKMMNIAKSMQKNCKTTNSLNRNSTKLPCLGSASKEAIRS 434

Query: 421 KDSHTMKCQQYKIKKPNEPAK--------HKKEVGKERLLELDKQ---LCHPVASKKNKT 480
              H +K QQ + +      K        HK+E  K +  EL+KQ   + +   S++  +
Sbjct: 435 SSHHILKIQQNETRNEERMGKQKQYGYHCHKREKEKCKSPELEKQKRVVINTQPSERVPS 494

Query: 481 SDK---FCPTNS-------SSYGESSLGNMVQTCRGDFNYENRRKPSNKMVDELSSSSTM 540
           S     F P++S       S    + LG  V+  +        R+ S+    E  S ST 
Sbjct: 495 SHSLHFFQPSSSANVQIENSCSRVNDLGPFVKIAQ-----SRCRESSSTANTEGGSCSTS 554

Query: 541 TQASEKR------HPAREAG-NDHDA----------------------KSEIRTLVKINL 590
              S  R          EAG N  D                       KSEI+ LVK+NL
Sbjct: 555 LFGSVLRGSMDFLDSNLEAGVNKLDIPEARTRLKKSCSKSKDRKDDNAKSEIQALVKLNL 614

[Close]
BLAST of Lsi02G001460 vs. TrEMBL
Match: W9RRI8_9ROSA (PHD and RING finger domain-containing protein 1 OS=Morus notabilis GN=L484_016659 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 9.7e-92
Identity = 240/674 (35.61%), Postives = 343/674 (50.89%), Query Frame = 1 

Query: 1   MTDDSTNSVVSPEDRIKTLIYCPSATASTKSGIENESLGGFDENQQLIDDNPSI--CVIC 60
           M  DS +S  SP  R+KT +   S ++  KS +E       DENQ  + +N +   C IC
Sbjct: 1   MAGDSADSDSSPSKRLKTGVSTQSQSSKCKSKLE-------DENQAPVAENSASRNCAIC 60

Query: 61  LSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVN 120
             +D KA RG++D CDHYFC++CIMEW++ ESRCP C+ RF  + R  KD     ER++ 
Sbjct: 61  FLEDVKAIRGEIDCCDHYFCFLCIMEWSKTESRCPMCRRRFAAIRRPPKDGVFACERMIK 120

Query: 121 IPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVPE 180
           +P+R+Q    +  T   DPYAE  C  C+  +DE L+LLCDLCDSAAHTYCVGLG  VPE
Sbjct: 121 VPVRDQ----ANTTGSFDPYAEVLCNACRSTKDEHLLLLCDLCDSAAHTYCVGLGFTVPE 180

Query: 181 GDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESSAQTVAITRS---- 240
           GDWFC DC ISRA+H  +E +   NDQ+    V  H A+ ++V+  S + V    S    
Sbjct: 181 GDWFCRDCIISRAEHAHSETNNEDNDQD----VIMHSALPNVVRRESHRPVNERASSRVS 240

Query: 241 -----VAQKSLPSRGGKAAG--------------------TSARTLHRCRSIHSHIRALR 300
                V   ++P R   A                      + ARTL RCR++HS IRALR
Sbjct: 241 SDSSRVFPSAVPHRRPLAVNEATGPGSRTFNMKAVEKFTKSGARTLGRCRNVHSRIRALR 300

Query: 301 DNWDALRGGSLNFPASSSSTYCGNSSKQNSGAALDNQTGQPHFSTAISLQATSGPECNES 360
           +NW+ALR GSL+F   SS   C +S K  + A L +++G+   +T+  +   S  E +  
Sbjct: 301 ENWNALRSGSLSFSPGSSKQQC-HSQKHENNAVLHDRSGEVE-TTSSKVSQQSRNEDSIR 360

Query: 361 SYDVEKAWRMMEIAKAKAIRAG--DQTLRHPASRQMSTKTK----DSHTMKCQQY----- 420
           S D+++AW+M++IAK+K    G   ++ + P S+   ++ +     +HT   QQ      
Sbjct: 361 SKDIDRAWKMLDIAKSKHCTRGKTSRSSKLPPSKVSGSEERANVSSNHTRNSQQLGYSGT 420

Query: 421 -----KIKKPNEPAKHKKEVGKERLLELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSL 480
                 ++KP E +  +KE+ K +  EL+K+       + ++   K     SSS   + L
Sbjct: 421 GVGKTGMEKPLEHSSFEKEIKKHQWAELEKE-------RSSRGITKVAAGCSSSLSTTCL 480

Query: 481 GNMVQTCRGDFNY----ENRRKPSNKMVDELSSSSTMTQASEKRHPA----REAGNDHDA 540
             +++              RRK  +  ++E  +S++   A E+  PA      A    D 
Sbjct: 481 PRLLEPSLSKNTISVVDNTRRKNRSIYLEESVNSASSNLAGEQNRPACLVSHGASESFDV 540

Query: 541 KSEIRTLV-----------------------------------KINLKLLSQDKNLGYER 585
           KSE+                                       K+NLKLLS+DK L    
Sbjct: 541 KSELSASSLKVDLPNGSTRSKNDSAQSNVVRHDDAKSEIQSLVKLNLKLLSRDKQLDVAG 600

[Close]
BLAST of Lsi02G001460 vs. TAIR10
Match: AT3G05670.1 (AT3G05670.1 RING/U-box protein)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-37
Identity = 99/285 (34.74%), Postives = 146/285 (51.23%), Query Frame = 1 

Query: 53  SICVICLSD-DGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDA-- 112
           ++C ICLS+ D +  +G LD C HYFC+ CIMEW+++ESRCP CK RF  + + A+    
Sbjct: 411 NVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTISKPARSTPG 470

Query: 113 CRLRERIVNIPMRNQDHSASGNT--RIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHT 172
             LRE ++ +P R+Q +  +        DPY    CT C   +D+GLMLLCDLCDS+AHT
Sbjct: 471 VDLREVVIPVPERDQVYQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCDLCDSSAHT 530

Query: 173 YCVGLGANVPEGDWFCHDC------TISRAQHTDTELDTSFNDQNQTATVQAHVAISDIV 232
           YCVGLG  VPEG+W+C  C      + S   H  +E        ++ + +       D+ 
Sbjct: 531 YCVGLGREVPEGNWYCEGCRPVALGSASSQTHIISEQQRGSGFYSRPSPLVVSGQYQDVS 590

Query: 233 KESSAQTVAIT-RSVAQKSLP---SRGGKAAGTSARTLHRCRSIHSHIRALRDNWDALRG 292
              S +T      ++    +P   ++G   +G  A TL R R++H HI+ +  N D L  
Sbjct: 591 LIVSPRTPFFNGENLFSPRIPNGDAQGSSPSGLGATTLSRRRTLHRHIQNI-INGDRLIN 650

Query: 293 GSLNFPASSSSTYCGNSSKQNSGAALDNQTGQPHFSTAISLQATS 323
                  +SS  +   +++   G  +D         T ISL A S
Sbjct: 651 MGARTGGTSSDGFV--TTQIGHGRTIDPSQPVASQETGISLYAIS 692

[Close]
BLAST of Lsi02G001460 vs. TAIR10
Match: AT1G28040.1 (AT1G28040.1 RING/U-box superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-06
Identity = 27/72 (37.50%), Postives = 37/72 (51.39%), Query Frame = 1 

Query: 26  TASTKSGIENESLGGFDENQQLIDDNPSICVICLSDDGKAERGK-LDSCDHYFCYVCIME 85
           T   +S IE+       E+++L   N  IC ICLS+    E  + +  CDH F   CI E
Sbjct: 224 TGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDE 283

Query: 86  WARIESRCPACK 97
           W +I S CP C+
Sbjct: 284 WLKIHSSCPVCR 295

[Close]
BLAST of Lsi02G001460 vs. TAIR10
Match: AT4G10940.1 (AT4G10940.1 RING/U-box protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-06
Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 1 

Query: 55  CVICLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVV 103
           C IC+  D   +RG LD C H+FC+ CI  W+ I + CP C+  F ++
Sbjct: 31  CGICM--DIIIDRGVLDCCQHWFCFECIDNWSTIMNLCPLCQREFQLI 76

[Close]
BLAST of Lsi02G001460 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.3e-06
Identity = 27/101 (26.73%), Postives = 45/101 (44.55%), Query Frame = 1 

Query: 34  ENESL--GGFDENQQLIDDNPSI-------CVICLSDDGKAERGKLDSCDHYFCYVCIME 93
           +N+S+  G     ++++D+ P++       C ICL D  K    K   C H F   CI+ 
Sbjct: 211 DNDSIRHGSLPARKEVVDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVP 270

Query: 94  WARIESRCPACKGRFTVVHRIAKDACRLRERIVNIPMRNQD 126
           W  + S CP C+           +  R R R + I + N++
Sbjct: 271 WLELHSSCPVCRYELPPDDETKVNPVRPRTRTLEINVSNEN 311

[Close]
BLAST of Lsi02G001460 vs. NCBI nr
Match: gi|659066655|ref|XP_008454700.1| (PREDICTED: uncharacterized protein LOC103495032 [Cucumis melo])

HSP 1 Score: 953.4 bits (2463), Expect = 1.9e-274
Identity = 495/619 (79.97%), Postives = 536/619 (86.59%), Query Frame = 1 

Query: 1   MTDDSTNSVVS-PEDRIKTLIYCPSATASTKSGIENE-SLGGFDENQQLIDDN-PSICVI 60
           M DDSTNS  S PEDR+K LI CPSA+A  KSG ENE   GGF+EN  LIDDN  SICVI
Sbjct: 1   MADDSTNSFASSPEDRLKALISCPSASA--KSGDENELPEGGFEENHLLIDDNHSSICVI 60

Query: 61  CLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIV 120
           C SDDGKAERGKLDSCDHYFC+VCIMEWARIESRCPACKGRFTVVHRIAKD CRLRERIV
Sbjct: 61  CFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIV 120

Query: 121 NIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVP 180
           NIPMRNQD SASGN RIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHT+CVGLGANVP
Sbjct: 121 NIPMRNQDQSASGNARIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGANVP 180

Query: 181 EGDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESSAQTVAIT----- 240
           EGDWFCHDCTISRAQHTD +LDTSFN+QNQT TV+  +AISDIVKESS+QTV IT     
Sbjct: 181 EGDWFCHDCTISRAQHTDIKLDTSFNNQNQTTTVEPRIAISDIVKESSSQTVGITCRGAL 240

Query: 241 ---------------RSVAQKSLPSRGGKAAGT----SARTLHRCRSIHSHIRALRDNWD 300
                           SVAQKSLPSRGGKAAGT    SARTLHRCR+IHS+IRALRDNWD
Sbjct: 241 LHSNRESPSIVPSSRSSVAQKSLPSRGGKAAGTGARTSARTLHRCRNIHSYIRALRDNWD 300

Query: 301 ALRGGSLNFPASSSSTYCGNSSKQNSGAA--LDNQTGQPHFSTAISLQATSGPECNESSY 360
           A+R GSL FPASSSSTYCGNSSK+++G A  ++ QT QP    AISLQAT+ PECN +SY
Sbjct: 301 AVRRGSLKFPASSSSTYCGNSSKRDTGGAELINKQTDQPQ---AISLQATALPECNGNSY 360

Query: 361 DVEKAWRMMEIAKAKAIRAGDQTLRHPASRQMSTKTKDSHTMKCQQYKIKKPNEPAKHKK 420
           DVEKAWRMMEIAKAKAIR GDQTLRHP SRQ++TKTKDSHT K QQYKIKKP+EPAKHKK
Sbjct: 361 DVEKAWRMMEIAKAKAIREGDQTLRHPVSRQITTKTKDSHTAKGQQYKIKKPDEPAKHKK 420

Query: 421 EVGKERLLELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSLGNMVQTCRGDFNYENRRK 480
           E+GK+RLLELDKQLC PVASKKNK SD+F PTNSSS GE  LG MVQTC GDF+ ENRRK
Sbjct: 421 EMGKQRLLELDKQLCRPVASKKNKASDEFFPTNSSSNGEFPLGKMVQTCGGDFHCENRRK 480

Query: 481 PSNKMVDELSSSSTMTQASEKRHPAREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERY 540
           PSNK+VDE+SSSSTMTQAS+K HPAREAGND D KSEIRTLVKINLKLLSQ KNLGYERY
Sbjct: 481 PSNKIVDEVSSSSTMTQASDKHHPAREAGNDDDGKSEIRTLVKINLKLLSQGKNLGYERY 540

Query: 541 KEVARLATHTIMAGCGLEPPPKPSKRFLSCSVCRHTEEEIQQLHRSTLMPNSCRECFLAF 591
           KEV+RLATH IMA CGLEPPPKP+K+++SCSVCRHTEEEI++LHRSTLMP+SCR+CF+ F
Sbjct: 541 KEVSRLATHAIMARCGLEPPPKPTKQYVSCSVCRHTEEEIRKLHRSTLMPDSCRKCFMGF 600

[Close]
BLAST of Lsi02G001460 vs. NCBI nr
Match: gi|778657168|ref|XP_004137454.2| (PREDICTED: uncharacterized protein LOC101208450 [Cucumis sativus])

HSP 1 Score: 930.6 bits (2404), Expect = 1.3e-267
Identity = 484/615 (78.70%), Postives = 531/615 (86.34%), Query Frame = 1 

Query: 1   MTDDSTNSVVSP-EDRIKTLIYCPSATASTKSGIENESL-GGFDENQQLIDDNPS-ICVI 60
           M DDSTNS  S  EDR+K LI CPSA+A  K G E E L GGF+E+  LIDDNPS ICVI
Sbjct: 1   MADDSTNSFASSSEDRLKALISCPSASA--KFGNEEEFLEGGFEESHLLIDDNPSSICVI 60

Query: 61  CLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIV 120
           C S+DGKAERGKLDSCDHYFC+VCIMEWARIESRCPACKGRFTVVHRIAKD CRLRERIV
Sbjct: 61  CFSEDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIV 120

Query: 121 NIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVP 180
           NIPMRNQD SASG+ RI DPYAETCCTVCKGMEDEGLMLLCDLCDSAAHT+CVGLGANVP
Sbjct: 121 NIPMRNQDQSASGSARIGDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGANVP 180

Query: 181 EGDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESSAQTVAITR---- 240
           EGDW+CHDCTI+RAQHTDTELDTSF  QNQT TV+  +AISDIVKESSAQTV+ITR    
Sbjct: 181 EGDWYCHDCTIARAQHTDTELDTSFIKQNQTTTVEPRIAISDIVKESSAQTVSITRRGAL 240

Query: 241 ----------------SVAQKSLPSRGGKAAGTSARTLHRCRSIHSHIRALRDNWDALRG 300
                           SVAQKSLPSRGGKAAGTSARTLHRCR+IHS+IRALRDNWDA+R 
Sbjct: 241 LHSNREPPSIVPSSRRSVAQKSLPSRGGKAAGTSARTLHRCRNIHSYIRALRDNWDAVRK 300

Query: 301 GSLNFPASSSSTYCGNSSKQNSGAA--LDNQTGQPHFSTAISLQATSGPECNESSYDVEK 360
           GSL FPASSSSTYCGNSSK+++G A  ++ QT QPH   AISLQAT+ PE N +S DVEK
Sbjct: 301 GSLRFPASSSSTYCGNSSKRDTGGAELINKQTNQPH---AISLQATTLPESNGNSCDVEK 360

Query: 361 AWRMMEIAKAKAIRAGDQTLRHPASRQMSTKTKDSHTMKCQQYKIKKPNEPAKHKKEVGK 420
           AWRMMEIAKAK+IR GDQTLRHP SRQ++TKTKDSHT K QQYKIKKP+EPAKHKKE+GK
Sbjct: 361 AWRMMEIAKAKSIREGDQTLRHPVSRQITTKTKDSHTAKGQQYKIKKPDEPAKHKKEMGK 420

Query: 421 ERLLELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSLGNMVQTCRGDFNYENRRKPSNK 480
           +RLLELDKQLC PVASKKNK SD+F PT+SSS GE  LG MVQT  GDF+ ENRRKPSNK
Sbjct: 421 QRLLELDKQLCRPVASKKNKASDEFFPTHSSSNGEFPLGKMVQTGGGDFHCENRRKPSNK 480

Query: 481 MVDELSSSSTMTQASEKRHPAREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVA 540
           +VDE+SSSSTMTQAS+K H AREAG+DHD KSEIRTLVKINLKLLSQ KNLGYERYKEV 
Sbjct: 481 IVDEVSSSSTMTQASDKHHSAREAGSDHDGKSEIRTLVKINLKLLSQGKNLGYERYKEVT 540

Query: 541 RLATHTIMAGCGLEPPPKPSKRFLSCSVCRHTEEEIQQLHRSTLMPNSCRECFLAFVKDV 591
           RLATHTIMA CGLEPPPKP+K+++S SVC+HTEEEI++LHRSTLMP+SCR+CF+ FVKDV
Sbjct: 541 RLATHTIMARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDV 600

[Close]
BLAST of Lsi02G001460 vs. NCBI nr
Match: gi|700208989|gb|KGN64085.1| (hypothetical protein Csa_1G039990 [Cucumis sativus])

HSP 1 Score: 930.6 bits (2404), Expect = 1.3e-267
Identity = 484/615 (78.70%), Postives = 531/615 (86.34%), Query Frame = 1 

Query: 1   MTDDSTNSVVSP-EDRIKTLIYCPSATASTKSGIENESL-GGFDENQQLIDDNPS-ICVI 60
           M DDSTNS  S  EDR+K LI CPSA+A  K G E E L GGF+E+  LIDDNPS ICVI
Sbjct: 48  MADDSTNSFASSSEDRLKALISCPSASA--KFGNEEEFLEGGFEESHLLIDDNPSSICVI 107

Query: 61  CLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIV 120
           C S+DGKAERGKLDSCDHYFC+VCIMEWARIESRCPACKGRFTVVHRIAKD CRLRERIV
Sbjct: 108 CFSEDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIV 167

Query: 121 NIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVP 180
           NIPMRNQD SASG+ RI DPYAETCCTVCKGMEDEGLMLLCDLCDSAAHT+CVGLGANVP
Sbjct: 168 NIPMRNQDQSASGSARIGDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGANVP 227

Query: 181 EGDWFCHDCTISRAQHTDTELDTSFNDQNQTATVQAHVAISDIVKESSAQTVAITR---- 240
           EGDW+CHDCTI+RAQHTDTELDTSF  QNQT TV+  +AISDIVKESSAQTV+ITR    
Sbjct: 228 EGDWYCHDCTIARAQHTDTELDTSFIKQNQTTTVEPRIAISDIVKESSAQTVSITRRGAL 287

Query: 241 ----------------SVAQKSLPSRGGKAAGTSARTLHRCRSIHSHIRALRDNWDALRG 300
                           SVAQKSLPSRGGKAAGTSARTLHRCR+IHS+IRALRDNWDA+R 
Sbjct: 288 LHSNREPPSIVPSSRRSVAQKSLPSRGGKAAGTSARTLHRCRNIHSYIRALRDNWDAVRK 347

Query: 301 GSLNFPASSSSTYCGNSSKQNSGAA--LDNQTGQPHFSTAISLQATSGPECNESSYDVEK 360
           GSL FPASSSSTYCGNSSK+++G A  ++ QT QPH   AISLQAT+ PE N +S DVEK
Sbjct: 348 GSLRFPASSSSTYCGNSSKRDTGGAELINKQTNQPH---AISLQATTLPESNGNSCDVEK 407

Query: 361 AWRMMEIAKAKAIRAGDQTLRHPASRQMSTKTKDSHTMKCQQYKIKKPNEPAKHKKEVGK 420
           AWRMMEIAKAK+IR GDQTLRHP SRQ++TKTKDSHT K QQYKIKKP+EPAKHKKE+GK
Sbjct: 408 AWRMMEIAKAKSIREGDQTLRHPVSRQITTKTKDSHTAKGQQYKIKKPDEPAKHKKEMGK 467

Query: 421 ERLLELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSLGNMVQTCRGDFNYENRRKPSNK 480
           +RLLELDKQLC PVASKKNK SD+F PT+SSS GE  LG MVQT  GDF+ ENRRKPSNK
Sbjct: 468 QRLLELDKQLCRPVASKKNKASDEFFPTHSSSNGEFPLGKMVQTGGGDFHCENRRKPSNK 527

Query: 481 MVDELSSSSTMTQASEKRHPAREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVA 540
           +VDE+SSSSTMTQAS+K H AREAG+DHD KSEIRTLVKINLKLLSQ KNLGYERYKEV 
Sbjct: 528 IVDEVSSSSTMTQASDKHHSAREAGSDHDGKSEIRTLVKINLKLLSQGKNLGYERYKEVT 587

Query: 541 RLATHTIMAGCGLEPPPKPSKRFLSCSVCRHTEEEIQQLHRSTLMPNSCRECFLAFVKDV 591
           RLATHTIMA CGLEPPPKP+K+++S SVC+HTEEEI++LHRSTLMP+SCR+CF+ FVKDV
Sbjct: 588 RLATHTIMARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDV 647

[Close]
BLAST of Lsi02G001460 vs. NCBI nr
Match: gi|225455732|ref|XP_002273302.1| (PREDICTED: autophagy-related protein 36 [Vitis vinifera])

HSP 1 Score: 360.5 bits (924), Expect = 5.5e-96
Identity = 252/659 (38.24%), Postives = 348/659 (52.81%), Query Frame = 1 

Query: 11  SPEDRIKTLIYCPSATASTKSGIENE-SLGGFDENQQLIDDNPSICVICLSDDGKAERGK 70
           SP  R  + I    A +S    + ++ S     + ++ +D + + C ICL +D +A RG 
Sbjct: 8   SPRQRSDSAIEYRIAMSSDSETLGSDISANQCPKAKEAVDFDSNCCGICLLEDDRAIRGW 67

Query: 71  LDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVNIPMRNQDHSAS 130
           +DSCDHYFC+VCIMEWA++ESRCP CK RF+ + R  K      ERIVN+P+R+Q +   
Sbjct: 68  VDSCDHYFCFVCIMEWAKVESRCPMCKRRFSTIRRPPKPGVFPSERIVNVPVRDQAYHHF 127

Query: 131 GN--TRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCT 190
           GN  T   DPYAE  C +C G  DE  +L+CDLCDSAAHTYCVGLG  VPEGDWFCHDCT
Sbjct: 128 GNVTTGPSDPYAEVDCGICHGTADESFLLICDLCDSAAHTYCVGLGHTVPEGDWFCHDCT 187

Query: 191 ISRAQHTDTELDTSFNDQN------QTATVQAHVAISDIVKESSAQTVAITRSVAQKSLP 250
           +SRA+H + E+D  F+D+N      +  + + HV+I DIV E   +      S+   S P
Sbjct: 188 VSRAEHANGEIDAVFDDRNNFRNFYRKPSAETHVSICDIVAEPYTREDERPPSIG-SSHP 247

Query: 251 SR--------------GGKAAGTSARTLHRCRSIHSHIRALRDNWDALRGGSLNFPASSS 310
           +R                 ++ + ARTL RCR++++HI+ALR+NW+ALR GS+ F +   
Sbjct: 248 NRPSSPIALNSENFAVNNSSSMSVARTLLRCRNVNAHIQALRENWNALRSGSMTFSSILG 307

Query: 311 STYCGNSSKQNSGAALDNQTGQPHFSTAISLQATSGPECNESSYDVEKAWRMMEIAKAKA 370
            +   +S K N GA+   Q                  + N  SYD EKAW+MM+  KAK+
Sbjct: 308 DSGGESSQKYNVGASCPKQ------------------DNNACSYDTEKAWKMMD--KAKS 367

Query: 371 I-RAGDQT-LRHPASRQMSTKT---KDSHTMKCQQYKIKKPNEPAKHKKEVG---KERLL 430
           I RA ++T + H  S+    K    K+   +K         N      K+ G   K   L
Sbjct: 368 IQRACERTGIIHQVSKHPLGKVNVPKEVANVKSS----SATNNRQLGNKDFGWHFKHHSL 427

Query: 431 ELDKQLCHPVASKKNKTSDKFCPTNSSSYGESSL------------GNMVQTC-RGDFNY 490
           E D +   P  S +N+   +   T    + ESSL                +T  + D ++
Sbjct: 428 ETDNKRYKPQKS-ENQEQGRVTRTGIPKFTESSLTIHSLVSFDSPSSRKAETSFQVDVHH 487

Query: 491 ENRRKPSNK-MVDELSS--------SSTMTQASEKRHP---------------------- 550
               +PS K +VD  ++        S  +      R P                      
Sbjct: 488 RTGVRPSQKNLVDSFNAINERDGYGSLIIPDGPVPRSPDLSHANLKFGASSLCKEDLLHR 547

Query: 551 ----------AREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVARLATHTIMAG 585
                       +A  D DAKSEI++LVK+NLKL+S+DK LG + +KEVARLATHTI+A 
Sbjct: 548 PKGRVEIGSAKNKARRDDDAKSEIQSLVKLNLKLISKDKQLGVDTFKEVARLATHTILAA 607

[Close]
BLAST of Lsi02G001460 vs. NCBI nr
Match: gi|590669094|ref|XP_007037677.1| (RING/U-box protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 355.1 bits (910), Expect = 2.3e-94
Identity = 256/682 (37.54%), Postives = 362/682 (53.08%), Query Frame = 1 

Query: 1   MTDDSTNSVVSPEDRIKTLIYCPSATASTKSGIENESLGGFDENQQLIDDNPSI-CVICL 60
           M  DST+   SP    +  I  P++    KS I++ES G   +  +  DD+ S  C ICL
Sbjct: 1   MAGDSTSDSPSPSPNKRLKITTPNS----KSIIQDESSGHHLQQSRDDDDSDSDKCGICL 60

Query: 61  SDDGK-AERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRIAKDACRLRERIVN 120
           SD G+ A RGK+DSCDH+FC+VCIMEWA++ESRCP CK RFT + R  K+A    ER+VN
Sbjct: 61  SDGGRRAIRGKIDSCDHFFCFVCIMEWAKVESRCPMCKRRFTAIRRPPKEAVFTSERVVN 120

Query: 121 IPMRNQDHSASGNTRIR--DPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANV 180
           IP R+Q +   GN      DPYAE  C+VC G+ DE L+LLCDLCDSAAHTYCVGLGA V
Sbjct: 121 IPQRDQVYHLCGNATSGPFDPYAEVKCSVCHGIADESLLLLCDLCDSAAHTYCVGLGATV 180

Query: 181 PEGDWFCHDCTISRAQHTDTELDTSFNDQNQTAT------VQAHVAISDIVKESSAQTVA 240
           P+GDWFCHDC +SR++H  TE+DT  +++  +         +A+V+I  IV+ S+    +
Sbjct: 181 PDGDWFCHDCALSRSEHEKTEVDTDTDNKMISGNSHVKLLAEANVSIFKIVRGSNIPVFS 240

Query: 241 ITRSVAQKSLPS-----------------------RGGKAAGTS----ARTLHRCRSIHS 300
              + +  SLP+                       R G   G S    ARTL  CR++HS
Sbjct: 241 -GHNASVSSLPTYLPPPLVPKRERNAVDKVSGPIERSGNTMGNSTEPGARTLGLCRNVHS 300

Query: 301 HIRALRDNWDALRGGSLNFPASSSSTYCGNSSKQNSGAALDN----QTGQPHFSTAISLQ 360
            I+ALR+NW +L+  SL+F  SSS    G  S++    AL +     + +P  S++ S Q
Sbjct: 301 RIQALRENWHSLQSRSLSF--SSSMVESGGGSRRKGTLALTSVSNYSSSEPQSSSSTSQQ 360

Query: 361 ATSG---PECNESSYDVEKAWRMMEIAKA-----KAIRAGDQTLRHP----ASRQMSTKT 420
           +TS     E     YD +KAW+MM IAK+     K   + +QT   P    ++ + +  +
Sbjct: 361 STSQNGFVEPKVDLYDTDKAWKMMNIAKSMQKNCKRNSSLNQTSTKPPCLGSALKEAISS 420

Query: 421 KDSHTMKCQQYKIKKPNEPAK--------HKKEVGKERLLELDKQLCHPVASKKNKT--- 480
              H  + QQ + +      K        H+ E  K +  E+DKQ    ++ + ++    
Sbjct: 421 SGLHISQIQQIETRNEERTGKQMHYRYYYHETEKEKHKSPEMDKQKRMVMSIQSSERVVT 480

Query: 481 --SDKFCPTNSSS----YGESSLGNMVQTCRGDFNYENRRKPSNKMVDELSSSSTMTQAS 540
             S +F P++SS+      +    N V+    +   + +   SN   D   S ST +  S
Sbjct: 481 SHSPRFSPSSSSTKFQIQNDDCHVNGVRPIVKNAQNKCQESSSNANKDGGYSCSTSSAGS 540

Query: 541 EKRHPAREAGND-----------------------------HDAKSEIRTLVKINLKLLS 584
             R       ++                              + K EI++LVK+NLKLL+
Sbjct: 541 VLRGSTDSLDSNLEFGVSILDILERRTRLEKSCSKSKDRRDDNVKCEIQSLVKLNLKLLN 600

The following BLAST results are available for this feature:
BLAST of Lsi02G001460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PHRF1_RAT8.9e-1427.35PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE... [more]
PHRF1_MOUSE3.4e-1328.65PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV... [more]
PHRF1_HUMAN5.8e-1330.92PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV... [more]
YQF7_SCHPO9.9e-1327.98PHD and RING finger domain-containing protein C126.07c OS=Schizosaccharomyces po... [more]
IRC20_YEAST1.6e-0735.56Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces cerevisiae (strain... [more]
BLAST of Lsi02G001460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB4_CUCSA9.2e-26878.70Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039990 PE=4 SV=1[more]
D7SIQ0_VITVI3.8e-9638.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04770 PE=4 SV=... [more]
A0A061FYS4_THECC1.6e-9437.54RING/U-box protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014395 PE=4 SV=... [more]
A0A0D2PV68_GOSRA1.0e-9337.72Uncharacterized protein OS=Gossypium raimondii GN=B456_001G066400 PE=4 SV=1[more]
W9RRI8_9ROSA9.7e-9235.61PHD and RING finger domain-containing protein 1 OS=Morus notabilis GN=L484_01665... [more]
BLAST of Lsi02G001460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05670.11.2e-3734.74 RING/U-box protein[more]
AT1G28040.11.9e-0637.50 RING/U-box superfamily protein[more]
AT4G10940.12.5e-0641.67 RING/U-box protein[more]
AT4G26400.24.3e-0626.73 RING/U-box superfamily protein[more]
BLAST of Lsi02G001460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066655|ref|XP_008454700.1|1.9e-27479.97PREDICTED: uncharacterized protein LOC103495032 [Cucumis melo][more]
gi|778657168|ref|XP_004137454.2|1.3e-26778.70PREDICTED: uncharacterized protein LOC101208450 [Cucumis sativus][more]
gi|700208989|gb|KGN64085.1|1.3e-26778.70hypothetical protein Csa_1G039990 [Cucumis sativus][more]
gi|225455732|ref|XP_002273302.1|5.5e-9638.24PREDICTED: autophagy-related protein 36 [Vitis vinifera][more]
gi|590669094|ref|XP_007037677.1|2.3e-9437.54RING/U-box protein, putative isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR019787Znf_PHD-finger
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
IPR001965Znf_PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G001460.1Lsi02G001460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 55..96
score: 2.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 143..186
score: 7.5coord: 55..95
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 55..96
score: 11
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 142..187
score: 2.
IPR011011Zinc finger, FYVE/PHD-typeunknownSSF57903FYVE/PHD zinc fingercoord: 130..189
score: 1.42
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 131..196
score: 6.6E-14coord: 52..99
score: 6.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 73..82
scor
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 143..187
score: 2.
IPR019787Zinc finger, PHD-fingerPROFILEPS50016ZF_PHD_2coord: 140..189
score:
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 48..103
score: 3.53

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G001460Csa1G039990Cucumber (Chinese Long) v2culsiB022
Lsi02G001460CSPI01G06440Wild cucumber (PI 183967)cpilsiB021
Lsi02G001460Cucsa.113500Cucumber (Gy14) v1cgylsiB148
Lsi02G001460CmaCh13G010530Cucurbita maxima (Rimu)cmalsiB208
Lsi02G001460CmoCh13G010960Cucurbita moschata (Rifu)cmolsiB198
Lsi02G001460Cla018536Watermelon (97103) v1lsiwmB212
Lsi02G001460MELO3C002058Melon (DHL92) v3.5.1lsimeB179
Lsi02G001460ClCG04G011520Watermelon (Charleston Gray)lsiwcgB192
Lsi02G001460MELO3C002058.2Melon (DHL92) v3.6.1lsimedB189
Lsi02G001460Cla97C04G078340Watermelon (97103) v2lsiwmbB184
Lsi02G001460Bhi08G000881Wax gourdlsiwgoB256
Lsi02G001460Cp4.1LG20g01060Cucurbita pepo (Zucchini)cpelsiB418
Lsi02G001460CsGy1G006140Cucumber (Gy14) v2cgyblsiB018
Lsi02G001460Carg04784Silver-seed gourdcarlsiB353
Lsi02G001460CsaV3_1G006290Cucumber (Chinese Long) v3cuclsiB022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G001460Cucumber (Chinese Long) v3cuclsiB024
Lsi02G001460Cucumber (Chinese Long) v3cuclsiB042
Lsi02G001460Cucumber (Chinese Long) v3cuclsiB293
Lsi02G001460Cucumber (Chinese Long) v3cuclsiB367
Lsi02G001460Watermelon (97103) v2lsiwmbB195
Lsi02G001460Watermelon (97103) v2lsiwmbB201
Lsi02G001460Wax gourdlsiwgoB223
Lsi02G001460Wax gourdlsiwgoB290
Lsi02G001460Bottle gourd (USVL1VR-Ls)lsilsiB113
Lsi02G001460Bottle gourd (USVL1VR-Ls)lsilsiB119
Lsi02G001460Cucumber (Gy14) v1cgylsiB334
Lsi02G001460Cucumber (Gy14) v1cgylsiB336
Lsi02G001460Cucurbita maxima (Rimu)cmalsiB054
Lsi02G001460Cucurbita maxima (Rimu)cmalsiB106
Lsi02G001460Cucurbita maxima (Rimu)cmalsiB370
Lsi02G001460Cucurbita maxima (Rimu)cmalsiB376
Lsi02G001460Cucurbita moschata (Rifu)cmolsiB042
Lsi02G001460Cucurbita moschata (Rifu)cmolsiB094
Lsi02G001460Cucurbita moschata (Rifu)cmolsiB356
Lsi02G001460Cucurbita moschata (Rifu)cmolsiB361
Lsi02G001460Cucurbita pepo (Zucchini)cpelsiB024
Lsi02G001460Cucurbita pepo (Zucchini)cpelsiB025
Lsi02G001460Cucurbita pepo (Zucchini)cpelsiB026
Lsi02G001460Cucurbita pepo (Zucchini)cpelsiB286
Lsi02G001460Cucurbita pepo (Zucchini)cpelsiB330
Lsi02G001460Cucurbita pepo (Zucchini)cpelsiB542
Lsi02G001460Wild cucumber (PI 183967)cpilsiB024
Lsi02G001460Wild cucumber (PI 183967)cpilsiB025
Lsi02G001460Wild cucumber (PI 183967)cpilsiB042
Lsi02G001460Cucumber (Chinese Long) v2culsiB025
Lsi02G001460Cucumber (Chinese Long) v2culsiB042
Lsi02G001460Melon (DHL92) v3.5.1lsimeB209
Lsi02G001460Watermelon (Charleston Gray)lsiwcgB201
Lsi02G001460Watermelon (97103) v1lsiwmB223
Lsi02G001460Cucumber (Gy14) v2cgyblsiB021
Lsi02G001460Cucumber (Gy14) v2cgyblsiB036
Lsi02G001460Cucumber (Gy14) v2cgyblsiB254
Lsi02G001460Cucumber (Gy14) v2cgyblsiB315
Lsi02G001460Melon (DHL92) v3.6.1lsimedB177
Lsi02G001460Melon (DHL92) v3.6.1lsimedB216
Lsi02G001460Melon (DHL92) v3.6.1lsimedB236
Lsi02G001460Silver-seed gourdcarlsiB417
Lsi02G001460Silver-seed gourdcarlsiB465
Lsi02G001460Silver-seed gourdcarlsiB467
Lsi02G001460Silver-seed gourdcarlsiB538