Lsi01G020300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G020300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	5\'-3\' exonuclease family protein isoform 2
Location	chr01 : 27983053 .. 27984141 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATAATAAAAGAAGAACCCTTGAGGATGGGCGAACGAAGATCGTAAGCAAAGTTACATTGCGAATTGGGCAGTCTCATGGCCTCCCACCATCTTCACACTGCGACTGCTAGTGCCTCGCATATTTGTAGAAATTTGTTGGGTTTCATTTTCACCTCCAAATTGCCTAATCCTCTTCGTTTCTCCTCTTCTTCTTCTTCGTCTTCTTTGAGGATACAGTCTCTTGGTCATCATTCTTTTCCGTCTTTCTCTCTTCTGCTATCCCCGAAGGTATGCCAGTTTCTGCTAGTTCATACTTCTATTTCTTAATTGATTCTAGTATTTACCAAGTAACTTAGTTTCATACAATTAGGAGGCTCATTAATGGCGGGGTGATATAGTGTAGATGTGAAATGAGCGAAGTATATTCTGGTAGCAAGTGTAGTTGGAGAAATCACTTACGAGCAGAATGTGGAAGATGGCTATCATTGCAATAACTTTTAATTGTGATCATAGCCTCTAATTTTAGCGTTTGCTTTTATTCAAAGCATTATACAACTTTTGCCTCTTATTTTCTGATGCAGTTTTGACTTTTGTTAAGGAATTTTCTCTGTTTCTCAGGGTTACTGTAGTTCATCCGGAAGTATAAATGCTCCCAATACCGTAGATAGCAATGCAACTTATCATAGTAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAATTCCAAGATTCATTATCGAATTCACTTTCGTACAAAGAAGAAACTGGAATTGATAATCCTTCAGATGCTAGAGTTATGCTCATTGATGGCACATCAATCATTTATAGAGCATACTACAAGCTTTTGGGTATGTTAGACTTGTCAGTCAGAATGTTTTAGTTTGACTTAGTTTGTTATTTTAACTTATATTTTCAATTCGTATTTTCACTGGAAATGGTTTATATGCCTAGAGGATAATTGGTAACAGGAAAATGGTCCAAATAAATCCGTTTGTAAAGATAAGTAGATATTAAATTCTAACCATTTTTACTTTTTGATTAGAAACACGAACAAACTTCATTAATAGAAAAGAAGATACAAAAATGGAGACGAGATATCTCTGA

mRNA sequence

AATAATAATAAAAGAAGAACCCTTGAGGATGGGCGAACGAAGATCGTAAGCAAAGTTACATTGCGAATTGGGCAGTCTCATGGCCTCCCACCATCTTCACACTGCGACTGCTAGTGCCTCGCATATTTGTAGAAATTTGTTGGGTTTCATTTTCACCTCCAAATTGCCTAATCCTCTTCGTTTCTCCTCTTCTTCTTCTTCGTCTTCTTTGAGGATACAGTCTCTTGGTCATCATTCTTTTCCGTCTTTCTCTCTTCTGCTATCCCCGAAGGGTTACTGTAGTTCATCCGGAAGTATAAATGCTCCCAATACCGTAGATAGCAATGCAACTTATCATAGTAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAATTCCAAGATTCATTATCGAATTCACTTTCGTACAAAGAAGAAACTGGAATTGATAATCCTTCAGATGCTAGAGTTATGCTCATTGATGGCACATCAATCATTTATAGAGCATACTACAAGCTTTTGGAAACACGAACAAACTTCATTAATAGAAAAGAAGATACAAAAATGGAGACGAGATATCTCTGA

Coding sequence (CDS)

ATGGCCTCCCACCATCTTCACACTGCGACTGCTAGTGCCTCGCATATTTGTAGAAATTTGTTGGGTTTCATTTTCACCTCCAAATTGCCTAATCCTCTTCGTTTCTCCTCTTCTTCTTCTTCGTCTTCTTTGAGGATACAGTCTCTTGGTCATCATTCTTTTCCGTCTTTCTCTCTTCTGCTATCCCCGAAGGGTTACTGTAGTTCATCCGGAAGTATAAATGCTCCCAATACCGTAGATAGCAATGCAACTTATCATAGTAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAATTCCAAGATTCATTATCGAATTCACTTTCGTACAAAGAAGAAACTGGAATTGATAATCCTTCAGATGCTAGAGTTATGCTCATTGATGGCACATCAATCATTTATAGAGCATACTACAAGCTTTTGGAAACACGAACAAACTTCATTAATAGAAAAGAAGATACAAAAATGGAGACGAGATATCTCTGA

Protein sequence

MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLLETRTNFINRKEDTKMETRYL

Homology

[Close]

BLAST of Lsi01G020300 vs. TrEMBL
Match: A0A0A0KYZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G442580 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-49
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLL 60
           MASHHLHTATASASHICRN LGFIFTSK P+P RFS+SSS    RI     HSFPSFSLL
Sbjct: 96  MASHHLHTATASASHICRNFLGFIFTSKFPHPFRFSTSSS----RI-----HSFPSFSLL 155

Query: 61  LSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPS 120
           LSPKGYCSSSGSIN+ NT+D+  TYH SSAS+R Q M+QFQDSLSN L++KE+TGIDNP+
Sbjct: 156 LSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA 215

Query: 121 DARVMLIDGTSIIYRAYYKLL 142
           DARVMLIDGTSII+RAYYKLL
Sbjct: 216 DARVMLIDGTSIIFRAYYKLL 227

[Close]

BLAST of Lsi01G020300 vs. TrEMBL
Match: M5Y5M0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010262mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 36  SSSSSSSSLRIQSLGHHSFPSFSLLLSPKGYCSSSGSINA--PNTVDSNATYHSSSASSR 95
           S SS  S  ++ SL       FS + SPKGYC+ S S N+  P  V  N     ++  S+
Sbjct: 121 SFSSIQSPKKLDSL------RFSPIKSPKGYCNISCSFNSALPGVVRENG---DAAFYSK 180

Query: 96  SQQMLQFQDSLSNSLSYKEETGIDNPSDARVMLIDGTSIIYRAYYKLL 142
           S+Q+L   D    S+  +E+T   NPSD RVMLIDGTSIIYRAYYKLL
Sbjct: 181 SEQVL-CGDMPLGSVKQEEKTVNSNPSDGRVMLIDGTSIIYRAYYKLL 218

[Close]

BLAST of Lsi01G020300 vs. NCBI nr
Match: gi|778694790|ref|XP_011653865.1| (PREDICTED: uncharacterized protein LOC101222649 isoform X2 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-49
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLL 60
           MASHHLHTATASASHICRN LGFIFTSK P+P RFS+SSS    RI     HSFPSFSLL
Sbjct: 19  MASHHLHTATASASHICRNFLGFIFTSKFPHPFRFSTSSS----RI-----HSFPSFSLL 78

Query: 61  LSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPS 120
           LSPKGYCSSSGSIN+ NT+D+  TYH SSAS+R Q M+QFQDSLSN L++KE+TGIDNP+
Sbjct: 79  LSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA 138

Query: 121 DARVMLIDGTSIIYRAYYKLL 142
           DARVMLIDGTSII+RAYYKLL
Sbjct: 139 DARVMLIDGTSIIFRAYYKLL 150

[Close]

BLAST of Lsi01G020300 vs. NCBI nr
Match: gi|700199585|gb|KGN54743.1| (hypothetical protein Csa_4G442580 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-49
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLL 60
           MASHHLHTATASASHICRN LGFIFTSK P+P RFS+SSS    RI     HSFPSFSLL
Sbjct: 96  MASHHLHTATASASHICRNFLGFIFTSKFPHPFRFSTSSS----RI-----HSFPSFSLL 155

Query: 61  LSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPS 120
           LSPKGYCSSSGSIN+ NT+D+  TYH SSAS+R Q M+QFQDSLSN L++KE+TGIDNP+
Sbjct: 156 LSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA 215

Query: 121 DARVMLIDGTSIIYRAYYKLL 142
           DARVMLIDGTSII+RAYYKLL
Sbjct: 216 DARVMLIDGTSIIFRAYYKLL 227

[Close]

BLAST of Lsi01G020300 vs. NCBI nr
Match: gi|449453197|ref|XP_004144345.1| (PREDICTED: uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-49
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLL 60
           MASHHLHTATASASHICRN LGFIFTSK P+P RFS+SSS    RI     HSFPSFSLL
Sbjct: 19  MASHHLHTATASASHICRNFLGFIFTSKFPHPFRFSTSSS----RI-----HSFPSFSLL 78

Query: 61  LSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPS 120
           LSPKGYCSSSGSIN+ NT+D+  TYH SSAS+R Q M+QFQDSLSN L++KE+TGIDNP+
Sbjct: 79  LSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA 138

Query: 121 DARVMLIDGTSIIYRAYYKLL 142
           DARVMLIDGTSII+RAYYKLL
Sbjct: 139 DARVMLIDGTSIIFRAYYKLL 150

[Close]

BLAST of Lsi01G020300 vs. NCBI nr
Match: gi|659069413|ref|XP_008449686.1| (PREDICTED: uncharacterized protein LOC103491482 isoform X2 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-47
Identity = 109/141 (77.30%), Postives = 121/141 (85.82%), Query Frame = 1


Query: 1   MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLL 60
           MASHHLHTATASASHICRN LGF+FTSK P P RFS+SSS    RI     HSFPS SLL
Sbjct: 19  MASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSS----RI-----HSFPS-SLL 78

Query: 61  LSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPS 120
           LSPKGYCSSSGSIN+ N +D+ ATYH SSAS+R Q M+QFQDSLSNSL++KE+TGIDNP+
Sbjct: 79  LSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA 138

Query: 121 DARVMLIDGTSIIYRAYYKLL 142
           DARVMLIDGTSII+RAYYKLL
Sbjct: 139 DARVMLIDGTSIIFRAYYKLL 149

[Close]

BLAST of Lsi01G020300 vs. NCBI nr
Match: gi|659069411|ref|XP_008449676.1| (PREDICTED: uncharacterized protein LOC103491482 isoform X1 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-47
Identity = 109/141 (77.30%), Postives = 121/141 (85.82%), Query Frame = 1


Query: 1   MASHHLHTATASASHICRNLLGFIFTSKLPNPLRFSSSSSSSSLRIQSLGHHSFPSFSLL 60
           MASHHLHTATASASHICRN LGF+FTSK P P RFS+SSS    RI     HSFPS SLL
Sbjct: 19  MASHHLHTATASASHICRNFLGFVFTSKFPVPFRFSTSSS----RI-----HSFPS-SLL 78

Query: 61  LSPKGYCSSSGSINAPNTVDSNATYHSSSASSRSQQMLQFQDSLSNSLSYKEETGIDNPS 120
           LSPKGYCSSSGSIN+ N +D+ ATYH SSAS+R Q M+QFQDSLSNSL++KE+TGIDNP+
Sbjct: 79  LSPKGYCSSSGSINSSNIIDTIATYHGSSASTRRQSMVQFQDSLSNSLTFKEDTGIDNPA 138

Query: 121 DARVMLIDGTSIIYRAYYKLL 142
           DARVMLIDGTSII+RAYYKLL
Sbjct: 139 DARVMLIDGTSIIFRAYYKLL 149

The following BLAST results are available for this feature:

BLAST of Lsi01G020300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G020300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYZ2_CUCSA	2.1e-49	78.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G442580 PE=4 SV=1	[more]
M5Y5M0_PRUPE	2.6e-07	47.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010262mg PE=4 SV=1	[more]

BLAST of Lsi01G020300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G020300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694790\|ref\|XP_011653865.1\|	3.0e-49	78.01	PREDICTED: uncharacterized protein LOC101222649 isoform X2 [Cucumis sativus]	[more]
gi\|700199585\|gb\|KGN54743.1\|	3.0e-49	78.01	hypothetical protein Csa_4G442580 [Cucumis sativus]	[more]
gi\|449453197\|ref\|XP_004144345.1\|	3.0e-49	78.01	PREDICTED: uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus]	[more]
gi\|659069413\|ref\|XP_008449686.1\|	2.2e-47	77.30	PREDICTED: uncharacterized protein LOC103491482 isoform X2 [Cucumis melo]	[more]
gi\|659069411\|ref\|XP_008449676.1\|	2.2e-47	77.30	PREDICTED: uncharacterized protein LOC103491482 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004527	exonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020300.1	Lsi01G020300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G020300	CmaCh03G000030	Cucurbita maxima (Rimu)	cmalsiB599
Lsi01G020300	Cp4.1LG10g12240	Cucurbita pepo (Zucchini)	cpelsiB050

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G020300	Wax gourd	lsiwgoB173
Lsi01G020300	Wax gourd	lsiwgoB174
Lsi01G020300	Cucumber (Gy14) v1	cgylsiB283
Lsi01G020300	Cucurbita maxima (Rimu)	cmalsiB795
Lsi01G020300	Cucurbita moschata (Rifu)	cmolsiB589
Lsi01G020300	Cucurbita moschata (Rifu)	cmolsiB782
Lsi01G020300	Cucurbita pepo (Zucchini)	cpelsiB395
Lsi01G020300	Wild cucumber (PI 183967)	cpilsiB249
Lsi01G020300	Cucumber (Chinese Long) v2	culsiB251
Lsi01G020300	Melon (DHL92) v3.5.1	lsimeB153
Lsi01G020300	Cucumber (Gy14) v2	cgyblsiB238
Lsi01G020300	Melon (DHL92) v3.6.1	lsimedB160
Lsi01G020300	Silver-seed gourd	carlsiB429
Lsi01G020300	Silver-seed gourd	carlsiB470
Lsi01G020300	Cucumber (Chinese Long) v3	cuclsiB274