Lsi01G020290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G020290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA exonuclease 4
Location	chr01 : 27781797 .. 27789597 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATCCTTATGAATTGATCCCTCAAAAGTTTGGAACTAATTTGTTCAATTTGGACATAAATTCCTAGGAAGAATAAAAAGAAGTATATTTATGATGAGGTCAAATAAAAGAAGAAAAAAAAACGAAGAAGGAAACTGGAAAAGAGAAGAACCTCAGAGTTCATCTTCCTCCCTTTCTCACTCACAGCCGCTGTCACACTCTTCTGTCGGAGTTTCATCTCACTGGCGAGCCCCCGACGACGACGACGGCAAGTGTTCCTGTTCGCCAGCAACCTCAGGCCACGCGACTCACGCGTTGACGGCGTTACCCACACTGCAATCCCGTGCGTTTGAGTTGCGTTTCCTCCTCTGGCGAGACCCACGAGTGGTGGTGAATCCGTCTTTGTAGCTGCACGACAGCAGGCTCTAGTGAAAGTTACGTGCGACGTTGGTTCAGCGACAGCTGCACTACGGGCTTCCCGGCGGCCGCATAAGCAAACAGATCCGACACCTATGATTGTCGGCGTTTCGATAGTGACCCACCAGAGCCTTCGCAGCAAAGTTTCTCTCCTTTTCGACGAGTTTTGGCTTTGACCCACACTCCAATTATAGTTTTGGACTGGTTCGAAGAGATCGATTAAGGTTTATGGTTAATTTTGGGTAAAAATATCCCTCCTCAACATTCTCTCATGAACTGAGTTTTAGCCTCTAAGCATTGTCTTAATTCTTTAGACTTCTAGGAAGTTGATATACTGCAAGTTTAGTAGTTTCCACATCCTTTCAGAACTATAAATTTTGGCCTAATTATGTTTTGATTATTTTAATTTGACAAACGTTTGAAAGAATGTTTTGAATGTTTGAAAATATGTTTTGTATAAGTTGAAGTTGATCGAAATAGTTTTGTACGCTTTATTTGAAAGTATGTTTGCAGTTTGATAATTTGAAATAAAATGTTTTGATTGATTTTGAATTGGAAGTAGGTTTGTTTTAGTTTTGTCACGCATTAAATTATTGAAAATATAGAATGGTTTGTTTTGATGAATTCTTTTATTGAATTTGCTAATTTGAAACTGTTTCAAATGGTTATGTAAGATTCTTCAAAAAAAAAAAAAAGAAAAAAATCCTTATATAAGAATTTTGATCAATTTGAAAGGGTTATCTGGATATGCCAATTTTGTTTTGACATTGTATGTTTATTTTGTAGTAGCCAATTTTGGAATGGACAGTTTATGATATGGATGAAACTTATTTGTGAGAAGCCACTTTATAGTGGTTTTGAAAGCTCATTTGAATGAAAGATTTTTGTTTTGAAAGCATTGTTTGTAACAAAGTTCAATGAATCATATTTTTTGTTGATGAGTGTTTTGAAAGACAATGAATCTAAAAGCCTGATATGAGCATTGCTGACAGAGTACTTTTGAACTCATTTTTGCTTTTCCCAATATGTTTTCAGATGAAAAATTAAGTGATGGTTGATGGTTCTAAAAGAAGTGAAGTTTGACATTCCGAACAATGTTTTTTTTAATATCAATTTTTTTTTTTTTTTTAAAGAATTGATAGTTTATCTTAGAAATCATTTGTAATACATCGCTTCTGCTTGATAAAGTTTCTAATGGTTATGTTTTCTACACTATTGTTATGCTAGCTTTATTGAAAAATACAAGCTGTTGCACTAGATTCCAGAGGAGAGGAACATACACTAACAGTTTTGGCTCCGCATGGACTCCGTCTCCGATCATGACCCTCCCAAGAAACTAAGCCTAAGGTTGCATTCTTGCTCTTACACAGTTACTTTTAGTTTTAGGTTTCTTATTGTCAACATCCTTTCCTTGTTTTTGTTTATTGGGGTTTTATAGAGCGACAAGAAGTAAAAACAACATGTTTTTACCTGTTGTCCTTCCCTGTTTGTTGGTCTTTATTGTCCATTAATTTCTTTAGGAGTGTCATTCCTAGTGGAACTCAGGTGAATCACTGTTATTCATTTCGTGTTTTCTCCCACCCATGCTTGACACCATCCTCTTTGTATTTGATGAAGACGATCATTTTGTCAATGTTAGGTTCTTATATCCTGCACTCAGTAAAACCCAACAAGGAAAAGACAAACAGAGCAAGAACCTCTGTGATATGCACTATTCAAGCGAAAAGATTACCAAGTCTACAACAAGGTCTCCAAGTACAGCACAATGTCAAATAACAGTGACAATAGTAACCTAAATGGAAATGACAAGAAATGAAAATGGTAATAGCAAAACTAGCACATTCGAGAGAACTAGCTGTCGTCTCCTCCCTAAAAGCCACACTGAGCTTTTACCAAAAATGAATCTGCCTTCTCCAAATCCCTGCTTCCCTATTTGAGGTAATATTCTTGGTCCCCACTTCCCAACTCATTCTTCCTCCCTTCCTCCGTAACTACTTTGTCAGCTACTGTCTTCTGTGAAATTCCTCTTCTACCCCTCCGTTTGTAAGTATATATTATTGGGGGTTTAACAGTCAACCTGAGCAATAACTTTTGGCTTTCAAAGAGGTTCTCGATCTTGTGATTCATACCAATGCAATGATCATCGTGACTGTTGATTCTTCAATCGTAACATATTGAGGTGTGAATGGTTCTCTCTCCTCTCTCCTACCTCTTCCTATCCCCCACTCTCTTACCCTCGTCCTTCACCCATCACGCCGGAGCCACCAACCATGACCTTCACCTCTGGACACTCCAACTCCTCCAACCATGATCAAAACCCAGCCGCCCATCAAGATTACATAGAAAGGAAGGTCTTCTCAATCGACATTGACCCAAACTCTCGAAGCAAAAGAGTCAAAATAACATAGTAGAATGGTGCCACTCACTAAATTTGAAGAACAAATTTTTTGCTAACTCCCTTCATGCAGCCTAAAGGGAATGCCTTGGTATAACCTCTTTTCAATAACTTCTCAAAGACTAAGTGTAGCAATAGGCATAAAGAAAATTAAAGAAAGTGTATGGGAACTGAAAGAATAACACAATTGTTGGTGTAAATCTTCTCGCCACCTTTCCAGCGAAATGTTTTTGACAATTTCTATCATCTCTTGCTTGTCTCCTGCAAAGTGATAGGCGACTAGACATTTTCCTCCCGTGTACTGCCTGAGAACCTCATGATGATAAAAGGGGGAGATGATATATCTCTAGAAGGCTGAGTTATAAAATAGATTCTTGATTGACTATTATGTATAGAATCATAATGAGGTTGTACTGTTCTGTTATTTTAGCTGAATTGAATCTGAATTGCCTTCTTATTAAAGAAGAAGAAAGCTATCATGGAAACTCCCATCATGACCATGGAATGTGTAGGCTTGTCATCTTTTCATTTAACCCTCCGCTATGGTTTCTACTTCATATTGAGTACTTGATGGTGAACATGAGAATTATTGGGTACATTTGTTTACAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAGGAGCACCTTATTGAGCATATGAGAGTTTCATATCACTCTGTTCATCAGCCTAGATGTGGAGTCTGCCTAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAAGGGTGAGATAGTTTTGTGTATTTTTTATGGTAATATACCATAACACCATCTTATTGTATCCAGTCTTTTAGGTCCACTTTCAAAATCAAATTGCTCAAAAATATTCTCGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGGTCCCGGATCTCTCAGTGAGCACCAAGACATTTGCTGCCTAACAGCACCTGTTCACCAAGTAAGTCGCTCTCTATGCATCATATATCATATATGATATTAATTAATAAGGTTACTGGTAGTTCTCATTAGAAAAAATAAGGTTACTGGTAGTTTATATTTTTGGATATATCAAGTAATTGAGCCATTTATTATGATGTCATACATGCATTTCAAAATTTTATTGGGGCTCTGATGTAGGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTACGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATAGATTGTGTAATGGCTGGCGGTGGAAGTGATGGTGCACTGGACATTTGTGTTTGGATCTGCCTTGTTGATGAAGATGAGAAATTGATTTTCAGTACTTTTGTACAACCACAAATACCAATCACGAATTACAGGTACTTGTCTGTGGCATTATCTTGCTCTTTAGAGAAGGTTTAAGCTTTTAGAAACCAGCCTGTAGATGCTCATTTCCCAGTCATGTTGTAGGCGTGAAGTAACCGGGCTAAAGGAAGAACATATGAGGTATGCCATGCCACTGAAAAAAGTCCAAGAAAAGGTATTAAGAATCTTGTTAAATGGAGAATCCATTGGGAGATTGAGATTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATCAATTATCCCGATCATATGTTAAGGTGATTTTCACTAACTTGGGTTCTAAGTATGTGTGGTCCTGTGGCTTAGTTCACCTTTATTGAAAACGAAATGCATTTGAACTCTGAAGTGATCTGGTGAAATGCAATGCACAAAAAACGATCAAATACTACTTTTCAACCCTGCACGTTATTTTCTCTGGAAATAATTCCTACCGCTGAGGAAAACAATGTATTTTTTTCCTCTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

GAAATCCTTATGAATTGATCCCTCAAAAGTTTGGAACTAATTTGTTCAATTTGGACATAAATTCCTAGGAAGAATAAAAAGAAGTATATTTATGATGAGGTCAAATAAAAGAAGAAAAAAAAACGAAGAAGGAAACTGGAAAAGAGAAGAACCTCAGAGTTCATCTTCCTCCCTTTCTCACTCACAGCCGCTGTCACACTCTTCTGTCGGAGTTTCATCTCACTGGCGAGCCCCCGACGACGACGACGGCAAGTGTTCCTGTTCGCCAGCAACCTCAGGCCACGCGACTCACGCGTTGACGGCGTTACCCACACTGCAATCCCGTGCGTTTGAGTTGCGTTTCCTCCTCTGGCGAGACCCACGAGTGGTGGTGAATCCGTCTTTGTAGCTGCACGACAGCAGGCTCTAGTGAAAGTTACGTGCGACGTTGGTTCAGCGACAGCTGCACTACGGGCTTCCCGGCGGCCGCATAAGCAAACAGATCCGACACCTATGATTGTCGGCGTTTCGATAGTGACCCACCAGAGCCTTCGCAGCAAAGTTTCTCTCCTTTTCGACGAGTTTTGGCTTTGACCCACACTCCAATTATAGTTTTGGACTGGTTCGAAGAGATCGATTAAGGTTTATGGTTAATTTTGGCTTTATTGAAAAATACAAGCTGTTGCACTAGATTCCAGAGGAGAGGAACATACACTAACAGTTTTGGCTCCGCATGGACTCCGTCTCCGATCATGACCCTCCCAAGAAACTAAGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAGGAGCACCTTATTGAGCATATGAGAGTTTCATATCACTCTGTTCATCAGCCTAGATGTGGAGTCTGCCTAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAAGGGTCCACTTTCAAAATCAAATTGCTCAAAAATATTCTCGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGGTCCCGGATCTCTCAGTGAGCACCAAGACATTTGCTGCCTAACAGCACCTGTTCACCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTACGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATAGATTGTGTAATGGCTGGCGGTGGAAGTGATGGTGCACTGGACATTTGTGTTTGGATCTGCCTTGTTGATGAAGATGAGAAATTGATTTTCAGTACTTTTGTACAACCACAAATACCAATCACGAATTACAGGTACTTGCGTGAAGTAACCGGGCTAAAGGAAGAACATATGAGGTATGCCATGCCACTGAAAAAAGTCCAAGAAAAGGTATTAAGAATCTTGTTAAATGGAGAATCCATTGGGAGATTGAGATTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATCAATTATCCCGATCATATGTTAAGGTGATTTTCACTAACTTGGGTTCTAAGTATGTGTGGTCCTGTGGCTTAGTTCACCTTTATTGAAAACGAAATGCATTTGAACTCTGAAGTGATCTGGTGAAATGCAATGCACAAAAAACGATCAAATACTACTTTTCAACCCTGCACGTTATTTTCTCTGGAAATAATTCCTACCGCTGAGGAAAACAATGGACACCGCTAGATATCATCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAGCATATTTGGGGTATGATATTCGTCAGGGTGGGCACAACCCCTACGAGAATTGTGTATCAGTTATGCGATTATACAAGAGAATGCGTAGTCTTGATCACCGTGCACAAGTTTTGACACCATTGATTGCTCCTCCCGCTATCCAGTATGATGCTCCCAATCTTGATTCCCATAGTGTAAAAGATCTTGAGAAGATGACTCCAGATGAACTTTATGAGATGTCAAGATCAAACTTTAAATGTTGGTGTCTTGACTCAAGGCGAGTAATGCAGACTTAGGTGGTGTCGGCAATTTGTATAGACAGTACTCATTTTGCTGAGGAAGAGGTGAGGTTGTTGGAAGACACGCTTCAGTGGGCCTTATTTGTTGAGAAAGGGGGGAGTGAGAGGGGAAAGGTTGACCTGTTCTATTGTATCTATCTATCCTTTCAAGACTTAAAACGACTAAAGTCGTATTGGATGTTTTTCTTGCCATATGAATATTCATATGATGGTGTTTATTTCCTCGACTACCTTTTGTTTATTTACCTGGTCCCTTTTTTTTTTCCAAGCCATCATTAATACCCTTGAATCTTTCAAAACTCTTCTGTCTTTGTCTTTTGCTTCTTCTTCGATTACGGTTTGGGAGATTTGGGTTAGTTGAGAATAATTTTTTAAAACAGAATCCTCCAATACTTTATTTCTTTTGATTTTCGGGGATTTGAGTTGGTTTAGAAGGTTGGGC

Coding sequence (CDS)

ATGGACTCCGTCTCCGATCATGACCCTCCCAAGAAACTAAGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAGGAGCACCTTATTGAGCATATGAGAGTTTCATATCACTCTGTTCATCAGCCTAGATGTGGAGTCTGCCTAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAAGGGTCCACTTTCAAAATCAAATTGCTCAAAAATATTCTCGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGGTCCCGGATCTCTCAGTGAGCACCAAGACATTTGCTGCCTAACAGCACCTGTTCACCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTACGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATAGATTGTGTAATGGCTGGCGGTGGAAGTGATGGTGCACTGGACATTTGTGTTTGGATCTGCCTTGTTGATGAAGATGAGAAATTGATTTTCAGTACTTTTGTACAACCACAAATACCAATCACGAATTACAGGTACTTGCGTGAAGTAACCGGGCTAAAGGAAGAACATATGAGGTATGCCATGCCACTGAAAAAAGTCCAAGAAAAGGTATTAAGAATCTTGTTAAATGGAGAATCCATTGGGAGATTGAGATTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATCAATTATCCCGATCATATGTTAAGGTGA

Protein sequence

MDSVSDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREHLKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLPTDLSDCYDEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDHMLR

Homology

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BLAST of Lsi01G020290 vs. Swiss-Prot
Match: REXO4_GIBZE (RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-10
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 1


Query: 136 IAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEEHM 195
           IAIDC M G G  G       + +VD     I+ ++V+P+  +TN+R    V+G+ ++ M
Sbjct: 134 IAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWR--TAVSGISQKSM 193

Query: 196 RYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDHMLR 254
           R+A   ++VQ ++ ++L              + R+LVGHDL+HDL+ L +++P   +R
Sbjct: 194 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIR 235

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BLAST of Lsi01G020290 vs. Swiss-Prot
Match: REXO4_NEUCR (RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 118 TDLSDCYDEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIP 177
           TDL+      +S+     ++IDC M G G  GA  +     +VD     I+ ++V+P   
Sbjct: 199 TDLALILQATKSNTLGKYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAF 258

Query: 178 ITNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLE 237
           +T++R    V+G+ + HM  A   + VQ  V  +L              K R+LVGHD++
Sbjct: 259 VTDWR--THVSGISKRHMASARSFESVQATVAALL--------------KGRILVGHDVK 318

Query: 238 HDLDCLRINYPDHMLR 254
           HDL+ L   +P   +R
Sbjct: 319 HDLEVLGFEHPHRDIR 318

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BLAST of Lsi01G020290 vs. Swiss-Prot
Match: REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = 1


Query: 136 IAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEEHM 195
           IA+DC   G G +G       I +V+    ++   FV+P+  +  +R    V+G+K EHM
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTW--VSGIKPEHM 181

Query: 196 RYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDHMLR 254
           + A+  K+ Q+K   IL              + R+LVGH L+HDL+ L +++P  +LR
Sbjct: 182 KNAITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLR 223

[Close]

BLAST of Lsi01G020290 vs. Swiss-Prot
Match: REXO4_KLULA (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX4 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-09
Identity = 35/118 (29.66%), Postives = 61/118 (51.69%), Query Frame = 1


Query: 136 IAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEEHM 195
           +++DC   G G DG       + +V+    ++   FV+P+ P+T++R    V+G+K  HM
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTW--VSGIKPHHM 179

Query: 196 RYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDHMLR 254
             A+  +  Q++V  +L              K R+LVGH + HDL  L +++P  M+R
Sbjct: 180 ANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIR 221

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BLAST of Lsi01G020290 vs. Swiss-Prot
Match: REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 39/129 (30.23%), Postives = 67/129 (51.94%), Query Frame = 1


Query: 126 EDRSDRGLG-AIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYL 185
           ++R+  GL   +A+DC M G G DG   I   + +V+   K ++  +V+P   +T+YR  
Sbjct: 224 KERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYR-- 283

Query: 186 REVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLR 245
             V+G++ E ++   P K VQ++V  IL              + R LVGH + +DL  L 
Sbjct: 284 TAVSGIRPEDVKKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILF 336

Query: 246 INYPDHMLR 254
           +++P   +R
Sbjct: 344 LDHPKKAIR 336

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BLAST of Lsi01G020290 vs. TrEMBL
Match: A0A0A0KYE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338960 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 8.3e-117
Identity = 203/218 (93.12%), Postives = 212/218 (97.25%), Query Frame = 1


Query: 36  MRVSYHSVHQPRCGVCLKHCKSFESLREHLKGPLSKSNCSKIFSEQGCGLCLRVLDGPGS 95
           MRVSYHSVHQPRCGVCLKHCKSFESLREHL GPLSKSNCSKIFSEQGCGLCLRVLDGP S
Sbjct: 1   MRVSYHSVHQPRCGVCLKHCKSFESLREHLMGPLSKSNCSKIFSEQGCGLCLRVLDGPES 60

Query: 96  LSEHQDICCLTAPVHQGTSLLPTDLSDCYDEDRSDRGLGAIAIDCVMAGGGSDGALDICV 155
           LS+HQDICC+TAPVHQGTSL PTDLSDCY+EDRSDRGLGAIAIDCVMAGGGSDGALDICV
Sbjct: 61  LSDHQDICCITAPVHQGTSLPPTDLSDCYEEDRSDRGLGAIAIDCVMAGGGSDGALDICV 120

Query: 156 WICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNG 215
           WICLVDEDEKLIF+TFVQPQIPITNYR+  EVTGLKEEHMRYAMPLK VQEKVL++LLNG
Sbjct: 121 WICLVDEDEKLIFNTFVQPQIPITNYRH--EVTGLKEEHMRYAMPLKNVQEKVLKLLLNG 180

Query: 216 ESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDHMLR 254
           ESIGRLRLNGGKA+LLVGHDLEHDLDCLR+NYPDHMLR
Sbjct: 181 ESIGRLRLNGGKAKLLVGHDLEHDLDCLRLNYPDHMLR 216

[Close]

BLAST of Lsi01G020290 vs. TrEMBL
Match: I1MCY4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G023300 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 8.1e-96
Identity = 171/255 (67.06%), Postives = 206/255 (80.78%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           ++ DPP+    RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVC KHCKSFESLREH
Sbjct: 3   AEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREH 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLP-----TD 124
           L GPL +  CSKIFS+QGC LCL + D PGSL +H+ IC ++AP   GTS LP      D
Sbjct: 63  LTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQFD 122

Query: 125 LSDCYDEDRSDRGL-GAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPI 184
             D  DE+ +  G  GA+A+DC M GGGSDG+L++C  +CLVDEDE+LIF T+VQP+IP+
Sbjct: 123 CQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPV 182

Query: 185 TNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEH 244
           TNYRY  ++TGL EEH+R AMPLK+V+EK+L+IL NGESIG++RL+GGKARLLVGHDL H
Sbjct: 183 TNYRY--DITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 242

Query: 245 DLDCLRINYPDHMLR 254
           DLDCL++NYPDHMLR
Sbjct: 243 DLDCLKMNYPDHMLR 255

[Close]

BLAST of Lsi01G020290 vs. TrEMBL
Match: A0A0B2RL39_GLYSO (RNA exonuclease 4 OS=Glycine soja GN=glysoja_022365 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-95
Identity = 170/255 (66.67%), Postives = 206/255 (80.78%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           ++ DPP+    RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVC KHCKSFESLREH
Sbjct: 3   AEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREH 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLP-----TD 124
           L GPL +  CSKIFS+QGC LCL + D PGSL +H+ IC ++AP   GTS LP      D
Sbjct: 63  LTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQFD 122

Query: 125 LSDCYDEDRSDRGL-GAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPI 184
             D  DE+ +  G  GA+A+DC M GGGSDG+L++C  +CLVDEDE+LIF T+VQP+IP+
Sbjct: 123 CQDSSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPV 182

Query: 185 TNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEH 244
           TNYRY  ++TGL EEH+R AMPLK+V+EK+L+IL NGESIG++RL+GGKARLLVGHDL H
Sbjct: 183 TNYRY--DITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 242

Query: 245 DLDCLRINYPDHMLR 254
           D+DCL++NYPDHMLR
Sbjct: 243 DMDCLKMNYPDHMLR 255

[Close]

BLAST of Lsi01G020290 vs. TrEMBL
Match: C6THA2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G351300 PE=2 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.4e-95
Identity = 171/255 (67.06%), Postives = 205/255 (80.39%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           ++ DPP+    RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVC KHCKSFESLREH
Sbjct: 3   AEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREH 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLP-----TD 124
           L GPL +  CSKIFS+QGC LCL + D PGSL  H++ C L+AP   GTS LP      D
Sbjct: 63  LTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFD 122

Query: 125 LSDCYDEDRSDRGL-GAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPI 184
             D  DE+ +  G  GA+AIDC M GGGSDG+L++C  +CLVDEDE+LIF T+VQP+IP+
Sbjct: 123 CQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPV 182

Query: 185 TNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEH 244
           TNYRY  ++TGL EEH++ A+PLKKV+EK+L+IL NGESIG++RL+GGKARLLVGHDL H
Sbjct: 183 TNYRY--DITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAH 242

Query: 245 DLDCLRINYPDHMLR 254
           DLDCL++NYPDHMLR
Sbjct: 243 DLDCLKMNYPDHMLR 255

[Close]

BLAST of Lsi01G020290 vs. TrEMBL
Match: A0A0R0HBP5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G351300 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.4e-95
Identity = 171/255 (67.06%), Postives = 205/255 (80.39%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           ++ DPP+    RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVC KHCKSFESLREH
Sbjct: 3   AEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREH 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLP-----TD 124
           L GPL +  CSKIFS+QGC LCL + D PGSL  H++ C L+AP   GTS LP      D
Sbjct: 63  LTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFD 122

Query: 125 LSDCYDEDRSDRGL-GAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPI 184
             D  DE+ +  G  GA+AIDC M GGGSDG+L++C  +CLVDEDE+LIF T+VQP+IP+
Sbjct: 123 CQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPV 182

Query: 185 TNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEH 244
           TNYRY  ++TGL EEH++ A+PLKKV+EK+L+IL NGESIG++RL+GGKARLLVGHDL H
Sbjct: 183 TNYRY--DITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAH 242

Query: 245 DLDCLRINYPDHMLR 254
           DLDCL++NYPDHMLR
Sbjct: 243 DLDCLKMNYPDHMLR 255

[Close]

BLAST of Lsi01G020290 vs. TAIR10
Match: AT2G48100.1 (AT2G48100.1 Exonuclease family protein)

HSP 1 Score: 261.2 bits (666), Expect = 6.8e-70
Identity = 128/255 (50.20%), Postives = 177/255 (69.41%), Query Frame = 1


Query: 1   MDSVSDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFES 60
           MDS  +    +K+S+RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVCLKHCKSFES
Sbjct: 1   MDSQLNPSKRRKISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFES 60

Query: 61  LREHLKGP--LSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLPT 120
           +REHL  P  LSK NC  IF+++GC LCL++ +   +L+EH++ C L+ P   GTS    
Sbjct: 61  VREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRN 120

Query: 121 DLSDCYDEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPI 180
             S       +   L A+A+DC M GGG+DG +D C  +CLVD+DE +IFST VQP +P+
Sbjct: 121 PSSSL-----AGSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPV 180

Query: 181 TNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEH 240
           T+YR+  E+TGL +E ++  MPL+ V+E+V   L  G++ G  RL      LLVGHDL H
Sbjct: 181 TDYRH--EITGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRL------LLVGHDLRH 240

Query: 241 DLDCLRINYPDHMLR 254
           D+ CL++ YP H+LR
Sbjct: 241 DMSCLKLEYPSHLLR 242

[Close]

BLAST of Lsi01G020290 vs. TAIR10
Match: AT3G27970.1 (AT3G27970.1 Exonuclease family protein)

HSP 1 Score: 257.7 bits (657), Expect = 7.6e-69
Identity = 124/246 (50.41%), Postives = 170/246 (69.11%), Query Frame = 1


Query: 14  SLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREHLKGPLSKSN 73
           +LR+KC+ACY+Q+ K EHL+EHM++SYHS H+P CGVC KHC+SFESLREHL GPL K  
Sbjct: 12  TLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLIGPLPKQE 71

Query: 74  CSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQG--TSLLPTDLSD----CYDED 133
           C  IFS +GC  C+ +L+ P S   HQ+ C  ++ V+ G  T +    L D     Y   
Sbjct: 72  CKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGLRDKAMIDYTSS 131

Query: 134 RSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREV 193
           RS R    +A+ C M GGGSDG+LD+C  +C+ DE + +IF T+V+P + +T+YRY  E 
Sbjct: 132 RSPR---VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRY--ET 191

Query: 194 TGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINY 253
           TG++ E++R AMPLK+VQ K+   L NGE + ++R  GGKAR+LVGH L+HDLD L++ Y
Sbjct: 192 TGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEY 251

[Close]

BLAST of Lsi01G020290 vs. TAIR10
Match: AT5G40310.1 (AT5G40310.1 Exonuclease family protein)

HSP 1 Score: 248.4 bits (633), Expect = 4.6e-66
Identity = 118/243 (48.56%), Postives = 161/243 (66.26%), Query Frame = 1


Query: 16  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREHLKGPLSKSNCS 75
           R+KC  CY+Q+ KKEHL+EHMR+SYHSVH+P CG+C KHC+SF+SLREHL GPL K  C 
Sbjct: 5   RNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQECK 64

Query: 76  KIFSEQGCGLCLRVLDGPGSLSEHQDICCLT-----APVHQGTSLLPTDLSDCYDEDRSD 135
            IFS +GC  CL +L+ P +   HQ+ C L+       +      L  + +  Y   RS 
Sbjct: 65  NIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNNSTIDYTSSRSP 124

Query: 136 RGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGL 195
           R    +A+ C M GGGSDG+LD+C  +C+ DE E ++F T+V+P IP+TNYRY  E+TG+
Sbjct: 125 R---VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRY--EMTGI 184

Query: 196 KEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDH 254
           + E++R AM LK  Q KV   L NGE + ++R   GKAR+LVGH L++ LD L++ Y   
Sbjct: 185 RPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSS 242

[Close]

BLAST of Lsi01G020290 vs. TAIR10
Match: AT3G50100.1 (AT3G50100.1 small RNA degrading nuclease 1)

HSP 1 Score: 52.4 bits (124), Expect = 4.8e-07
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 1


Query: 136 IAIDC--VMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEE 195
           +A+DC  V+   G++G + + V    VD D K+I   FV+P  P+ +YR   ++TG+  E
Sbjct: 141 VAVDCEMVLCEDGTEGLVRVGV----VDRDLKVILDEFVKPNKPVVDYR--TDITGITAE 200

Query: 196 HMRYA-MPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINYP 249
            +  A + +  +QE +   L  G              +LVGH L  DL+ L+I++P
Sbjct: 201 DIENASLSVVDIQETLQPFLSTG-------------TILVGHSLNRDLEVLKIDHP 237

[Close]

BLAST of Lsi01G020290 vs. TAIR10
Match: AT5G05540.1 (AT5G05540.1 small RNA degrading nuclease 2)

HSP 1 Score: 48.9 bits (115), Expect = 5.3e-06
Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 1


Query: 136 IAIDC--VMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEE 195
           IAIDC  V+   GS+      V +  VD D K+I   FV+P  P+ +YR    +TGL  +
Sbjct: 143 IAIDCEMVLCEDGSEAV----VRVAAVDRDLKVILDEFVKPNQPVVDYRTF--ITGLTAQ 202

Query: 196 HMRYA-MPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRINY 248
            +  A + +  +QEK+L  +              +  +LVG  L HDL  L++++
Sbjct: 203 DLEKATISVVDIQEKLLMFI-------------SEDTILVGQSLNHDLKVLKVDH 238

[Close]

BLAST of Lsi01G020290 vs. NCBI nr
Match: gi|778694140|ref|XP_011653750.1| (PREDICTED: apoptosis-enhancing nuclease isoform X1 [Cucumis sativus])

HSP 1 Score: 484.6 bits (1246), Expect = 1.1e-133
Identity = 231/249 (92.77%), Postives = 240/249 (96.39%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           SDHDP K  SLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH
Sbjct: 3   SDHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLPTDLSDCY 124
           L GPLSKSNCSKIFSEQGCGLCLRVLDGP SLS+HQDICC+TAPVHQGTSL PTDLSDCY
Sbjct: 63  LMGPLSKSNCSKIFSEQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTDLSDCY 122

Query: 125 DEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYL 184
           +EDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIF+TFVQPQIPITNYR+ 
Sbjct: 123 EEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYRH- 182

Query: 185 REVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLR 244
            EVTGLKEEHMRYAMPLK VQEKVL++LLNGESIGRLRLNGGKA+LLVGHDLEHDLDCLR
Sbjct: 183 -EVTGLKEEHMRYAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDLDCLR 242

Query: 245 INYPDHMLR 254
           +NYPDHMLR
Sbjct: 243 LNYPDHMLR 249

[Close]

BLAST of Lsi01G020290 vs. NCBI nr
Match: gi|659111763|ref|XP_008455896.1| (PREDICTED: uncharacterized protein LOC103495972 isoform X2 [Cucumis melo])

HSP 1 Score: 460.3 bits (1183), Expect = 2.2e-126
Identity = 220/249 (88.35%), Postives = 235/249 (94.38%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           S HDP K  SLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLRE+
Sbjct: 3   SHHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREY 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLPTDLSDCY 124
           L GPLSKS+CSKIFSEQGCGLCLRVLD P +LSEH +ICC+TAPVHQGTSLLPTDLSDCY
Sbjct: 63  LMGPLSKSSCSKIFSEQGCGLCLRVLDSPKTLSEHLNICCITAPVHQGTSLLPTDLSDCY 122

Query: 125 DEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYL 184
           +EDRSDRGLGAIA+DCVMAGGGSDGALDICVWICLVDE EKLIF+TFVQPQIPITNYR+ 
Sbjct: 123 EEDRSDRGLGAIAMDCVMAGGGSDGALDICVWICLVDEHEKLIFNTFVQPQIPITNYRH- 182

Query: 185 REVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLR 244
            EVTGLKEEH+RYAMPL+ VQEKVL++LLNGESIGRLR NGGKA+LLVGHDLEHDLD LR
Sbjct: 183 -EVTGLKEEHLRYAMPLRNVQEKVLKLLLNGESIGRLRSNGGKAKLLVGHDLEHDLDYLR 242

Query: 245 INYPDHMLR 254
           +NYPDHMLR
Sbjct: 243 MNYPDHMLR 249

[Close]

BLAST of Lsi01G020290 vs. NCBI nr
Match: gi|659111761|ref|XP_008455895.1| (PREDICTED: uncharacterized protein LOC103495972 isoform X1 [Cucumis melo])

HSP 1 Score: 460.3 bits (1183), Expect = 2.2e-126
Identity = 220/249 (88.35%), Postives = 235/249 (94.38%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           S HDP K  SLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLRE+
Sbjct: 3   SHHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREY 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLPTDLSDCY 124
           L GPLSKS+CSKIFSEQGCGLCLRVLD P +LSEH +ICC+TAPVHQGTSLLPTDLSDCY
Sbjct: 63  LMGPLSKSSCSKIFSEQGCGLCLRVLDSPKTLSEHLNICCITAPVHQGTSLLPTDLSDCY 122

Query: 125 DEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYL 184
           +EDRSDRGLGAIA+DCVMAGGGSDGALDICVWICLVDE EKLIF+TFVQPQIPITNYR+ 
Sbjct: 123 EEDRSDRGLGAIAMDCVMAGGGSDGALDICVWICLVDEHEKLIFNTFVQPQIPITNYRH- 182

Query: 185 REVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLR 244
            EVTGLKEEH+RYAMPL+ VQEKVL++LLNGESIGRLR NGGKA+LLVGHDLEHDLD LR
Sbjct: 183 -EVTGLKEEHLRYAMPLRNVQEKVLKLLLNGESIGRLRSNGGKAKLLVGHDLEHDLDYLR 242

Query: 245 INYPDHMLR 254
           +NYPDHMLR
Sbjct: 243 MNYPDHMLR 249

[Close]

BLAST of Lsi01G020290 vs. NCBI nr
Match: gi|449449811|ref|XP_004142658.1| (PREDICTED: apoptosis-enhancing nuclease isoform X2 [Cucumis sativus])

HSP 1 Score: 448.7 bits (1153), Expect = 6.5e-123
Identity = 218/249 (87.55%), Postives = 227/249 (91.16%), Query Frame = 1


Query: 5   SDHDPPKKLSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 64
           SDHDP K  SLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH
Sbjct: 3   SDHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREH 62

Query: 65  LKGPLSKSNCSKIFSEQGCGLCLRVLDGPGSLSEHQDICCLTAPVHQGTSLLPTDLSDCY 124
           L              EQGCGLCLRVLDGP SLS+HQDICC+TAPVHQGTSL PTDLSDCY
Sbjct: 63  LM-------------EQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTDLSDCY 122

Query: 125 DEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFSTFVQPQIPITNYRYL 184
           +EDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIF+TFVQPQIPITNYR+ 
Sbjct: 123 EEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYRH- 182

Query: 185 REVTGLKEEHMRYAMPLKKVQEKVLRILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLR 244
            EVTGLKEEHMRYAMPLK VQEKVL++LLNGESIGRLRLNGGKA+LLVGHDLEHDLDCLR
Sbjct: 183 -EVTGLKEEHMRYAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDLDCLR 236

Query: 245 INYPDHMLR 254
           +NYPDHMLR
Sbjct: 243 LNYPDHMLR 236

[Close]

BLAST of Lsi01G020290 vs. NCBI nr
Match: gi|700199335|gb|KGN54493.1| (hypothetical protein Csa_4G338960 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 1.2e-116
Identity = 203/218 (93.12%), Postives = 212/218 (97.25%), Query Frame = 1


Query: 36  MRVSYHSVHQPRCGVCLKHCKSFESLREHLKGPLSKSNCSKIFSEQGCGLCLRVLDGPGS 95
           MRVSYHSVHQPRCGVCLKHCKSFESLREHL GPLSKSNCSKIFSEQGCGLCLRVLDGP S
Sbjct: 1   MRVSYHSVHQPRCGVCLKHCKSFESLREHLMGPLSKSNCSKIFSEQGCGLCLRVLDGPES 60

Query: 96  LSEHQDICCLTAPVHQGTSLLPTDLSDCYDEDRSDRGLGAIAIDCVMAGGGSDGALDICV 155
           LS+HQDICC+TAPVHQGTSL PTDLSDCY+EDRSDRGLGAIAIDCVMAGGGSDGALDICV
Sbjct: 61  LSDHQDICCITAPVHQGTSLPPTDLSDCYEEDRSDRGLGAIAIDCVMAGGGSDGALDICV 120

Query: 156 WICLVDEDEKLIFSTFVQPQIPITNYRYLREVTGLKEEHMRYAMPLKKVQEKVLRILLNG 215
           WICLVDEDEKLIF+TFVQPQIPITNYR+  EVTGLKEEHMRYAMPLK VQEKVL++LLNG
Sbjct: 121 WICLVDEDEKLIFNTFVQPQIPITNYRH--EVTGLKEEHMRYAMPLKNVQEKVLKLLLNG 180

Query: 216 ESIGRLRLNGGKARLLVGHDLEHDLDCLRINYPDHMLR 254
           ESIGRLRLNGGKA+LLVGHDLEHDLDCLR+NYPDHMLR
Sbjct: 181 ESIGRLRLNGGKAKLLVGHDLEHDLDCLRLNYPDHMLR 216

The following BLAST results are available for this feature:

BLAST of Lsi01G020290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REXO4_GIBZE	2.6e-10	32.20	RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / ...	[more]
REXO4_NEUCR	2.2e-09	30.15	RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708...	[more]
REXO4_YEAST	2.2e-09	32.20	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RE...	[more]
REXO4_KLULA	6.3e-09	29.66	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]
REXO4_XENLA	3.1e-08	30.23	RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2	[more]

BLAST of Lsi01G020290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE9_CUCSA	8.3e-117	93.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338960 PE=4 SV=1	[more]
I1MCY4_SOYBN	8.1e-96	67.06	Uncharacterized protein OS=Glycine max GN=GLYMA_15G023300 PE=4 SV=1	[more]
A0A0B2RL39_GLYSO	1.1e-95	66.67	RNA exonuclease 4 OS=Glycine soja GN=glysoja_022365 PE=4 SV=1	[more]
C6THA2_SOYBN	1.4e-95	67.06	Uncharacterized protein OS=Glycine max GN=GLYMA_13G351300 PE=2 SV=1	[more]
A0A0R0HBP5_SOYBN	1.4e-95	67.06	Uncharacterized protein OS=Glycine max GN=GLYMA_13G351300 PE=4 SV=1	[more]

BLAST of Lsi01G020290 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G48100.1	6.8e-70	50.20	Exonuclease family protein	[more]
AT3G27970.1	7.6e-69	50.41	Exonuclease family protein	[more]
AT5G40310.1	4.6e-66	48.56	Exonuclease family protein	[more]
AT3G50100.1	4.8e-07	31.03	small RNA degrading nuclease 1	[more]
AT5G05540.1	5.3e-06	31.30	small RNA degrading nuclease 2	[more]

BLAST of Lsi01G020290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694140\|ref\|XP_011653750.1\|	1.1e-133	92.77	PREDICTED: apoptosis-enhancing nuclease isoform X1 [Cucumis sativus]	[more]
gi\|659111763\|ref\|XP_008455896.1\|	2.2e-126	88.35	PREDICTED: uncharacterized protein LOC103495972 isoform X2 [Cucumis melo]	[more]
gi\|659111761\|ref\|XP_008455895.1\|	2.2e-126	88.35	PREDICTED: uncharacterized protein LOC103495972 isoform X1 [Cucumis melo]	[more]
gi\|449449811\|ref\|XP_004142658.1\|	6.5e-123	87.55	PREDICTED: apoptosis-enhancing nuclease isoform X2 [Cucumis sativus]	[more]
gi\|700199335\|gb\|KGN54493.1\|	1.2e-116	93.12	hypothetical protein Csa_4G338960 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020290.1	Lsi01G020290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 19..41 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 17..46 score: 11
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 135..251 score: 6.2
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 136..249 score: 7.91
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 1..253 score: 1.3E
None	No IPR available	PANTHER	PTHR12801:SF66	EXONUCLEASE-LIKE PROTEIN	coord: 1..253 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G020290	Cla006111	Watermelon (97103) v1	lsiwmB149
Lsi01G020290	ClCG04G003200	Watermelon (Charleston Gray)	lsiwcgB138
Lsi01G020290	Cla97C04G070390	Watermelon (97103) v2	lsiwmbB136

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G020290	Cucumber (Gy14) v1	cgylsiB283
Lsi01G020290	Cucurbita maxima (Rimu)	cmalsiB599
Lsi01G020290	Cucurbita maxima (Rimu)	cmalsiB795
Lsi01G020290	Cucurbita moschata (Rifu)	cmolsiB589
Lsi01G020290	Cucurbita moschata (Rifu)	cmolsiB782
Lsi01G020290	Cucurbita pepo (Zucchini)	cpelsiB050
Lsi01G020290	Cucurbita pepo (Zucchini)	cpelsiB395
Lsi01G020290	Wild cucumber (PI 183967)	cpilsiB249
Lsi01G020290	Cucumber (Chinese Long) v2	culsiB251
Lsi01G020290	Melon (DHL92) v3.5.1	lsimeB153
Lsi01G020290	Cucumber (Gy14) v2	cgyblsiB238
Lsi01G020290	Melon (DHL92) v3.6.1	lsimedB160
Lsi01G020290	Silver-seed gourd	carlsiB429
Lsi01G020290	Silver-seed gourd	carlsiB470
Lsi01G020290	Cucumber (Chinese Long) v3	cuclsiB274
Lsi01G020290	Wax gourd	lsiwgoB173
Lsi01G020290	Wax gourd	lsiwgoB174