Lsi01G020250 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G020250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein FRIGIDA, putative
Location	chr01 : 27734955 .. 27739509 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTATCTGCCTCTTGAAAATACTATTCAAACACACAAGATTTCCTTAAGGCAAATTCCAAGTTCTTCAGCCTATTGTAGAAGACTGAGATCTCCGTCTCTCTCACCCTTAAGAAAGATAACCAAAAACAAGCCTACCTCTCACCCTCCTCCTCGAATTACATTGTCAATTCCTTTCTTACCCCTATGGCAATGTTTAAATATAATTGGAGGCCTAATAGCATGTTTCCTCGTCCATGGCCACCTGAGCGTCGAGTGATGCATGCCATATATTTCTTAATAATGACCAAAGAAGCATGGTTATGGAGATTAGACCGACATGGACATGGTGACATGTCATTTTTTAAAAAATTTAGAGCATTGATAATGATACAACAAAGACACATTTAGTTAAATATACATTTTTTAAAATATATATAATTAAGAAATTTAAAATCATTAAGTTTATGTATGCCTTAAACTTCATATGATGAAGGTTTTTTTATCTCATCCTTTATGGATTGGCTTGTATCTTTTCTTTCCCCTCATTGTATATCCTAGTTTGTATCTTTCATTTGGGATTTGCTTTTGTTTTGTATTTGGGTGTTTTTCCTATTGGATTATGTTAGGAACCAAGGTAGTATGGGTTCCCTTTGTCCCACATCAGTTAGAATGGGATGACCAATGTGGTACTTTAGTGGCTTGACTCTCTCACCTTAATAGTTGGCTTTTGGGATGTGGTTCTCCAAGGTGCTTAAGTACCTAATAATGGTATCAGAGTTGGTTGTTGACGTTCCAAAGGGGAGCACAGGGAGGGTTTTGATCGGGTGTTTTCGAGTGAAGCATCATCAGTTTAGCTGCCGGGTTGTTTGCTTTTCAATAGTGGAGTATTGTTAGGAACCAAGGTAGTATGGTTACCTTTGTCCTACATCGGTTAGAATGGGATGACCAATGTGGTACTTAAGTAGCTTGGCTCTCTCATCTCAATAGCTGGCTTTTGGGGTGTGGTTCTTCAAGGTGCTTAAGTACCTAACAGATTATCTCCATTGTACTCTTTGGATATTTCACATCAATGAAATTGTTTCTTATCCAAAAAAAAAGTTTGCCTTGAAAATGACGTATTTTTCCCTCAAAATTTATTAATCTTGTTCCACATTACTATTTGTTTCCTTATGCTTCACCAATGTTTGATACATGTCTAGCAAATTTTGGACCCACACTTTATACAACTAGTATTTGAACACAACTATTGTGCTAGCTAGTATTCGCTACCTGTCCAACAAGTGTACATTACCCAAACTTCGCTCATCTTTTGGGATTTGATGCTATCCACCCTCAGCTGGTTCACAACCTCATCAAAGGAGCCACCACATGCACACACAACATGCTATCTTTTGTCCTTGAAGCATCCTTTGACGAGGGAGGAAAACCCTTGAGCCCATCTATCAGGACATTGTTATGGTCCACTGAGAAAGAAAGAAGCAACCAAATGCTCAATGAAAAGAAGAAAACTTTTGATAGTTTGAATCTTTGTCGTTTTTGCCCTCACTTAGTGTGGAAATTATCCTCAATTTCAGAGTATTAGCATGCTTTCTCTTTTGTCCAGTTGGAGGTGTTCTTTGTAAACCTCCCTTGGATTGGGGAATTACTTTTCTCCCCCTTAACATTTTGTAATTCCGTCTCATCAGTTCTTGTTTCCTATCAAAATAAAAAAATAAAAAATAAAAATAAAAGCGAGTCAACTTTAAATTGCATTTTCTCCACAATTAAGAATTTGACTTTCAGGTATTTTATATGCTGATAATGCATAAGTAGTAACGAAGATTTCAATTTCCTTAATATCTGTAAGTTGCTTGTTCAACCTTGGAGTCTGATTGGCATATGTTTGATTGCCTCTGCTAGTTTAGATCAATTCCCATTCTCATTTGGCTGCTTGACTATTATATAACAGACATTATAAAGGGGATGATGAAGAACAGTAAGAATGTTGAAGCTGTTGATATTATTTATGCTTTTGGTATGGAGGATGTATTTCCACCACAGGAAATTCTGTTGTCATTTCTCCAAGAGTGTGATGAAACGTGGAAAAAAAGAATAAATGAAGTACGAGGTTCAACCATGCAACTGGTATGGTTTATCTCGACCTATGGGCATTAATTTAGTCTTTATAAATTATAATTAATTTATTCTTAAATTATAATTAATTTATTCTTTCTTCTTTTTTTTCTTTTTTTCTTTTTTTCTTCTTGAACATAACTTTTCATTGATTAGTGAAAAGTTACAATATCAGGACTAATTTCCCAACTTTCTAGTGTAAGACCAATTGAATATCCCATCGCTTCTAATAACCTGCCTGACCCAAACTTGAATACGAAGGTAATAGAGTTCTGAAAATATTTGGAAAGAGTACACCAAGAAGCTCTTTCCTTCCTAAGTTGGGATTGGATTCTTTAAGTTTCTCTGAGAATGATACCATTCATTTAATTTGTAATGTTCTCTCCTTTCAAGGTTTTATGTTCCCCATCCAGAAAAATTAAAAGCAAAAGCAAAAGCAAAAACAAAAATAAACTGCTATACTATTACATATGTAGGATTTTTTTTGTTAATTATATATCTCATCCTTAGGATGTTTTGATTGGTCTTTATCGTAAGCCTAAGCAGCATGTGAGTTGAGTTGTATTTGATGCTTTATGGGTTTTGGGTTTTTTGTATTTGTTTATTCCTATTGAGTTATTTTCTTCTTTTGTCAGATGTAACTTATTTTTGTTTTTTTGAAATGGAGTGATTTTCACAAGTTTCAATTATATTCTCGAACCTTTGATTAGTTTTAGTCGAGTTTTTGTTATCAAATAAACAATAATGAAGCCAATATGTACCATAATTAGGAATTTGATGTGATTGGGTATTTGAAAATATCGACTATTGTGTATAACAAAATGAAGTCTAGTTCATTTGCCACATCGAGGGGAAAACCTCATTTTATAAGAAACATATTAACCGATGTTTTGAAGATAATCTTCCATACCGTATCCACATTTGATTTATTTAGAGCAGGAAGTCTTAGTGAAGAGTTCAATTGAAAATTTTAGATTAGAATAAATGCATAGTTAATGGGTGAAATTTGGGATTTGGAGATGGTTTTTCAAACCCTTGAAGTAGTGGAAAACTGAACCCTATGTTTACCACTGATATTTATTTTATTTTATTTATTTATTTTTAATTCTCTCAATGTGTGGTTTTGTTTAGTTTTCGTTGTCAAGCCTTGCCCAATTTGTTAGTTTTGCTCAGTGAATTTAGTTATGTTCTCTGAGGTTTCTCTTGGCAAATTCTGCTCCAACATCATTAACTTGTTCTTCTGCCTCTTGTTGAAATTACTTACCTTCTAGTTACATGGTTTTTGTCAGAGACGAGTGAGTGAAGAGAAATTGGCTTCTCTGAAATGTGTTCTGAAGTGTTTGGAAGATCACAAGTTGGATCCTGTGAAGTCTCTTCCTGGATGGAAAATTCACGAAATGATAAAAAATTTGGAGAAGGATATTGTGGAACTTGGGAAAAGAATGGAAGATAATGCGAGTATGAAGAGAAAAACAGATGAAGCTTCAACGCAGAAGTATCTGAGTCAGGAAATAAAGCGATCGCGAATGGCAGCAAGTAAAGGAGGATTCCCTGTTATGTCTTATCCAGTGAATGGGTTGTTGGAACAAAAGGCAGCCACATTTTTGGAGGACAAGAGCTGTTTTAGTAGTAGTAGTAGTTCGATGCCACAAAAGTTATTGGATGGTGGACGTGCTGCTCAGTTGGGTACTTACCAAATTGCTTCGTCTTTGCGTGGACCTGGTTTGGTTGAAACTAAAGTTTTGCCTTCCGACATTGGTAGTACTATCTCCATCTCCAATGCTGCCTCATTCCCAAGAGGAATGGGAATGGGAATGGGAAGGGACAGCAATGAGGCTTCCATTTACAAAATGGGGCCAACTCGTGAGTTAGCTTACAAAGATACATCAGTAGGCCAAAGCTTTATTCAACAAGCTATGCCTACAATTACGACAACGCCTACACCTACACCGCCGCCACCCGTAGAGTCTTATTCAGCTGTAGACGGGTTCATGGGACACACCACAAGCAATCATTTTGATCTGTATCATTTTGCTGATGCGGCCGTGTTTGAAAATGATGCACCCAAGAGCAGCAGCACTCAAACTGGTACTTTGTCTCGTCTTCGGCTGCCGCCCCATCATCACCATCCTCCCTACTTTTACAATTGATCCTAAATATCACTTCATTTCATAATATAACAAAAATAGCTGCTTCGACTTCAACTTTTGGATAGGATTTGTTGAAACACATTTTCTTGTCTCATCAGCAAAGGGATGGATGTATTAGTCTTTAAATTTATTAGGCAGGCTGATAGAATGTTCTTTACTTAACTTATGCATGTGAACTTTACATTTCAGTTATAACAATGTTATTCATCTGTTCCTGTTTATATCTCAATAGTAGTGTCATTTTTGTGCTTTGTTTTTTCCTCTCCTTTTCAACTTATGCCAAAACCGCTCTTTATTTATAGTTGGT

mRNA sequence

ATGAAAGACATTATAAAGGGGATGATGAAGAACAGTAAGAATGTTGAAGCTGTTGATATTATTTATGCTTTTGGTATGGAGGATGTATTTCCACCACAGGAAATTCTGTTGTCATTTCTCCAAGAGTGTGATGAAACGTGGAAAAAAAGAATAAATGAAGTACGAGGTTCAACCATGCAACTGAGACGAGTGAGTGAAGAGAAATTGGCTTCTCTGAAATGTGTTCTGAAGTGTTTGGAAGATCACAAGTTGGATCCTGTGAAGTCTCTTCCTGGATGGAAAATTCACGAAATGATAAAAAATTTGGAGAAGGATATTGTGGAACTTGGGAAAAGAATGGAAGATAATGCGAGTATGAAGAGAAAAACAGATGAAGCTTCAACGCAGAAGTATCTGAGTCAGGAAATAAAGCGATCGCGAATGGCAGCAAGTAAAGGAGGATTCCCTGTTATGTCTTATCCAGTGAATGGGTTGTTGGAACAAAAGGCAGCCACATTTTTGGAGGACAAGAGCTGTTTTAGTAGTAGTAGTAGTTCGATGCCACAAAAGTTATTGGATGGTGGACGTGCTGCTCAGTTGGGTACTTACCAAATTGCTTCGTCTTTGCGTGGACCTGGTTTGGTTGAAACTAAAGTTTTGCCTTCCGACATTGGTAGTACTATCTCCATCTCCAATGCTGCCTCATTCCCAAGAGGAATGGGAATGGGAATGGGAAGGGACAGCAATGAGGCTTCCATTTACAAAATGGGGCCAACTCGTGAGTTAGCTTACAAAGATACATCAGTAGGCCAAAGCTTTATTCAACAAGCTATGCCTACAATTACGACAACGCCTACACCTACACCGCCGCCACCCGTAGAGTCTTATTCAGCTGTAGACGGGTTCATGGGACACACCACAAGCAATCATTTTGATCTGTATCATTTTGCTGATGCGGCCGTGTTTGAAAATGATGCACCCAAGAGCAGCAGCACTCAAACTGGTACTTTGTCTCGTCTTCGGCTGCCGCCCCATCATCACCATCCTCCCTACTTTTACAATTGATCCTAAATATCACTTCATTTCATAATATAACAAAAATAGCTGCTTCGACTTCAACTTTTGGATAGGATTTGTTGAAACACATTTTCTTGTCTCATCAGCAAAGGGATGGATGTATTAGTCTTTAAATTTATTAGGCAGGCTGATAGAATGTTCTTTACTTAACTTATGCATGTGAACTTTACATTTCAGTTATAACAATGTTATTCATCTGTTCCTGTTTATATCTCAATAGTAGTGTCATTTTTGTGCTTTGTTTTTTCCTCTCCTTTTCAACTTATGCCAAAACCGCTCTTTATTTATAGTTGGT

Coding sequence (CDS)

ATGAAAGACATTATAAAGGGGATGATGAAGAACAGTAAGAATGTTGAAGCTGTTGATATTATTTATGCTTTTGGTATGGAGGATGTATTTCCACCACAGGAAATTCTGTTGTCATTTCTCCAAGAGTGTGATGAAACGTGGAAAAAAAGAATAAATGAAGTACGAGGTTCAACCATGCAACTGAGACGAGTGAGTGAAGAGAAATTGGCTTCTCTGAAATGTGTTCTGAAGTGTTTGGAAGATCACAAGTTGGATCCTGTGAAGTCTCTTCCTGGATGGAAAATTCACGAAATGATAAAAAATTTGGAGAAGGATATTGTGGAACTTGGGAAAAGAATGGAAGATAATGCGAGTATGAAGAGAAAAACAGATGAAGCTTCAACGCAGAAGTATCTGAGTCAGGAAATAAAGCGATCGCGAATGGCAGCAAGTAAAGGAGGATTCCCTGTTATGTCTTATCCAGTGAATGGGTTGTTGGAACAAAAGGCAGCCACATTTTTGGAGGACAAGAGCTGTTTTAGTAGTAGTAGTAGTTCGATGCCACAAAAGTTATTGGATGGTGGACGTGCTGCTCAGTTGGGTACTTACCAAATTGCTTCGTCTTTGCGTGGACCTGGTTTGGTTGAAACTAAAGTTTTGCCTTCCGACATTGGTAGTACTATCTCCATCTCCAATGCTGCCTCATTCCCAAGAGGAATGGGAATGGGAATGGGAAGGGACAGCAATGAGGCTTCCATTTACAAAATGGGGCCAACTCGTGAGTTAGCTTACAAAGATACATCAGTAGGCCAAAGCTTTATTCAACAAGCTATGCCTACAATTACGACAACGCCTACACCTACACCGCCGCCACCCGTAGAGTCTTATTCAGCTGTAGACGGGTTCATGGGACACACCACAAGCAATCATTTTGATCTGTATCATTTTGCTGATGCGGCCGTGTTTGAAAATGATGCACCCAAGAGCAGCAGCACTCAAACTGGTACTTTGTCTCGTCTTCGGCTGCCGCCCCATCATCACCATCCTCCCTACTTTTACAATTGA

Protein sequence

MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRKTDEASTQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSSMPQKLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSDIGSTISISNAASFPRGMGMGMGRDSNEASIYKMGPTRELAYKDTSVGQSFIQQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTSNHFDLYHFADAAVFENDAPKSSSTQTGTLSRLRLPPHHHHPPYFYN

Homology

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BLAST of Lsi01G020250 vs. Swiss-Prot
Match: FRIGI_ARATH (Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-20
Identity = 53/140 (37.86%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 4   IIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLRR 63
           I++  +K   ++EA++++Y FGMED F    +L SFL+   E++++   + + S +  + 
Sbjct: 320 IVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSKESFERAKRKAQ-SPLAFKE 379

Query: 64  VSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRKT 123
            + ++LA L  V++C+E HKLDP K LPGW+I E I +LEKD ++L K ME+ A      
Sbjct: 380 AATKQLAVLSSVMQCMETHKLDPAKELPGWQIKEQIVSLEKDTLQLDKEMEEKARSLSLM 439

Query: 124 DEASTQKYL-SQEIKRSRMA 143
           +EA+  K + +Q+IKR R++
Sbjct: 440 EEAALAKRMYNQQIKRPRLS 458

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BLAST of Lsi01G020250 vs. Swiss-Prot
Match: FRL4A_ARATH (FRIGIDA-like protein 4a OS=Arabidopsis thaliana GN=FRL4A PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-06
Identity = 29/111 (26.13%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           M D+I+ ++   + ++AV   Y  G+ D FPP  +L ++L++  ++    + +   +   
Sbjct: 303 MPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTGRA 362

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGK 112
              V+ ++ ++LK VLKC+E++KL+  +  P   + + +  LEK   E  K
Sbjct: 363 THLVARKEQSALKAVLKCIEEYKLE--EEFPPENLKKRLDQLEKTKTEKRK 411

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BLAST of Lsi01G020250 vs. TrEMBL
Match: A0A0A0KYX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437530 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 3.0e-165
Identity = 306/346 (88.44%), Postives = 321/346 (92.77%), Query Frame = 1


Query: 3   DIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLR 62
           DIIKGM K+SKN+EAVDIIYAFGME+VFPPQEILLSFLQECDETWKKRIN+VRGSTMQLR
Sbjct: 270 DIIKGMTKSSKNIEAVDIIYAFGMENVFPPQEILLSFLQECDETWKKRINKVRGSTMQLR 329

Query: 63  RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRK 122
           RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNAS+KRK
Sbjct: 330 RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASLKRK 389

Query: 123 TDEASTQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSSMPQ 182
           TDEASTQKYLSQEIKRSRM+A+KGGFPVMSYPVNGLLEQ A TFLEDKSCFS+SSSSMP 
Sbjct: 390 TDEASTQKYLSQEIKRSRMSANKGGFPVMSYPVNGLLEQNATTFLEDKSCFSTSSSSMPL 449

Query: 183 KLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSD-IGSTISISNAASFPRGMGMGMGRDS 242
           KLLDGGRA+QLG YQIASSLRGPGLVET VLP+D IGS IS + AA FPRGMG G GRDS
Sbjct: 450 KLLDGGRASQLGNYQIASSLRGPGLVETTVLPADIIGSGIS-NAAAPFPRGMGWGRGRDS 509

Query: 243 NEASIYKMGPTRELAYKDTSVGQSFIQQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTS 302
           NEASIYKMGPTRE AYKD SVGQSFIQQAMPT+ TTPTP PP  VE YSAV GFMGH+TS
Sbjct: 510 NEASIYKMGPTREFAYKDISVGQSFIQQAMPTLATTPTP-PPTTVEPYSAVYGFMGHSTS 569

Query: 303 NHFDLYHFADAAVFENDAPKSSSTQTGTLSRLRLPPHHHHPPYFYN 348
           N+FDLYHFADAAVFEND PK+ STQTGTLSRLRL PHHHHP YFYN
Sbjct: 570 NNFDLYHFADAAVFENDLPKNRSTQTGTLSRLRL-PHHHHPSYFYN 612

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BLAST of Lsi01G020250 vs. TrEMBL
Match: A0A067JI55_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26334 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.6e-32
Identity = 112/333 (33.63%), Postives = 170/333 (51.05%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           + DI++ MM +   +EAVD+ Y FG+E  FPPQ++L SFL++ +E  K+R  E   S + 
Sbjct: 333 ISDILERMMNHGAKIEAVDVAYTFGVEKKFPPQKLLTSFLRDSNEALKRRKREANISPIV 392

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMK 120
           L+  SE+++A+LK V+K LED K DP K LPGW++ EMI  LEK+I ++ K++ D  + K
Sbjct: 393 LKEASEKQVAALKTVIKLLEDRKFDPTKLLPGWQLREMIDKLEKEIGDINKKIADKVTPK 452

Query: 121 RKTDEASTQKYL-SQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSS 180
           RK DE      L SQE KRSR      G P++S P  GL EQ+AA  ++  S F   S+S
Sbjct: 453 RKADENEFASNLRSQETKRSRFT----GSPLISSPSIGLHEQRAAGHVDGNSLF---SAS 512

Query: 181 MPQKLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSD-IGSTISISNAASFPRGMGMGMG 240
           +   LLDGG + Q  T   AS+   P       LP   IG    +    S  +G G+G+ 
Sbjct: 513 LRMNLLDGGFSGQ--TNNPASAGPMPYGYSVPSLPEHAIG---MVKGGGSILQGAGVGLS 572

Query: 241 RDSNEASIYKMGPTRELAYKDTSV--------------GQSFIQ--QAMPTITTTPTPTP 300
              +  +    G  +E+  ++  +              G S++        +    +   
Sbjct: 573 TGYSAPTSSFSGVHKEMLDRNGQIMGRNGPPYGWHGVGGSSYVDGPHGQSFVHQPASGLF 632

Query: 301 PPPVESYSAVDGFM---GHTTSNHFDLYHFADA 313
            P +E ++ +       G   ++  DLY FADA
Sbjct: 633 SPSIEGFAGLPNSPPTGGANRNSTSDLYRFADA 653

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BLAST of Lsi01G020250 vs. TrEMBL
Match: A5AYD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004504 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-31
Identity = 121/352 (34.38%), Postives = 170/352 (48.30%), Query Frame = 1


Query: 3    DIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQL- 62
            D+I+GM+KN  NVEAVD  Y FG+E+ FP  +IL SFL+E  E WK+   E   S ++L 
Sbjct: 1294 DVIQGMIKNQMNVEAVDFAYTFGLEEKFPIWKILTSFLREHKEEWKRTREE--DSPIRLF 1353

Query: 63   ------RRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMED 122
                  ++ +E  L+++K V +CLEDH++DP K L GW I E I  LEK++ +L K+ME 
Sbjct: 1354 YVVYLQKKANENYLSAMKSVTRCLEDHRVDPSKLLSGWHIDEKIIQLEKEMADLDKKMEG 1413

Query: 123  NASMKRKTDEA-STQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFS 182
               +KRK DE  S +K  ++EIK S +AA           V GL EQ+ A  +  +S + 
Sbjct: 1414 KVMLKRKADEIDSLKKMKTREIKHSPIAAPSS--------VIGLQEQRVADNMASRSFY- 1473

Query: 183  SSSSSMPQKLLDGGRAAQLGTYQIASS-LRGPGLVETKVLPSDIGSTISISNAASFPRGM 242
               S+MP   LD G    + TY  AS+ L G G      LP +I  T+S S + +   G 
Sbjct: 1474 --DSTMPINFLDSGFPGHISTYPAASAMLHGSG---GGSLPENITGTMSGSGSGTRVHGT 1533

Query: 243  GMGMGR---------------------DSNEASIYKMGP----TRELAYKDTSVGQSFI- 302
            G G G                      D     +   GP     R++ + D  +GQSFI 
Sbjct: 1534 GTGPGMAGTGGVPSMASFSGAHGEMLFDRTGQMMKNNGPPYAGRRDMGFNDRVIGQSFIA 1593

Query: 303  -------QQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTSNHFDLYHFADA 313
                          T+  +    P   S +A +G      S+  DLY FADA
Sbjct: 1594 HPASMGVDSIFGPSTSMESFPGMPNAPSINAANG------SSASDLYQFADA 1623

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BLAST of Lsi01G020250 vs. TrEMBL
Match: K7KVE1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G162100 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.6e-31
Identity = 108/317 (34.07%), Postives = 159/317 (50.16%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           + D+  GMMK    V+AVD+ Y FG E+ + PQ  L SFLQ+ +ETWKK   + R     
Sbjct: 288 VSDVADGMMKKGMAVKAVDLAYTFGFEEKYSPQTALTSFLQKSEETWKKAKQDARDFPSA 347

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMK 120
           L+   E+ LA+L+ V+KCLE HK+DPVK LPGW++   I NLEKDI +  K++++ + +K
Sbjct: 348 LKVAHEKYLAALQSVVKCLEGHKIDPVKFLPGWQLKNKITNLEKDISDTNKKIDEKSMLK 407

Query: 121 RKTDE-ASTQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSS 180
           RK D+  S+ K    E KR+R         V+S  +  L EQ+  + ++  S +  S S+
Sbjct: 408 RKVDKNNSSNKMKIPEAKRARFTGKDAS--VLSPSLATLQEQRIFSRMDGNSSYDGSLSA 467

Query: 181 MPQKLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSDIGSTISISNAASFPRGMGMGMGR 240
               LLDG          + ++     L E K L S + S  ++   A       MG   
Sbjct: 468 ---HLLDGRSYGNYPNNYLTAASASDSLAE-KYLGSAVASGANMLGGA-------MGGSF 527

Query: 241 DSNEASIYKMGPTRELAYK-DTSVGQSFIQQAMPTITTTPTPTPPPPVESYSAVDGFM-- 300
              +  +Y+     E A   D SVGQSF+ Q+  T+      T     E ++ V   +  
Sbjct: 528 SGYQGDMYRYHGIGEGALSHDRSVGQSFVGQSASTLNNLYGKT---STEGFAGVPEHLSV 587

Query: 301 -GHTTSNHFDLYHFADA 313
              + S   DLY FADA
Sbjct: 588 GASSRSGGSDLYGFADA 588

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BLAST of Lsi01G020250 vs. TrEMBL
Match: B9RA29_RICCO (Protein FRIGIDA, putative OS=Ricinus communis GN=RCOM_1502940 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 103/317 (32.49%), Postives = 160/317 (50.47%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           + DI++ MM N   +EA+D+ Y FG+ED FPPQ++L SFL++  E  K+R  E   S + 
Sbjct: 307 VSDILERMMNNGMKIEAIDVAYTFGIEDKFPPQKLLTSFLRDSKEALKRRRREANNSPVL 366

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMK 120
           L+  S++ L++LK  +K LE  KLDP K LPGW++ E I  LEK+I +L ++++D  + K
Sbjct: 367 LKEASQKHLSTLKSAMKFLEGRKLDPKKLLPGWQVTEKIDKLEKEIADLNRKIDDKVAPK 426

Query: 121 RKTDEASTQKYL-SQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSS 180
           RK DE      L SQE+KR R      G P++S P  GL EQ+  + L+    +++S+  
Sbjct: 427 RKADENEFSINLKSQEVKRLRFT----GSPLISSPSFGLHEQRVPSHLDGNGSYNASTRI 486

Query: 181 MPQKLLDGGRAAQLGTYQIASS-LRGPGLVETKVLPSDIGSTISISNAASFPRGMGMGMG 240
               ++DGG +  +    +A S L G G          + ST S +           G  
Sbjct: 487 ---NMVDGGFSCLISNPPVAGSMLYGSGSYSAAY---GVPSTSSFAGVYRETLADRTGNI 546

Query: 241 RDSNEASIYKMGPTRELAYKDTSVGQSFIQQAMPTITTTPTPTPPPPVESYSAVDGFMGH 300
             SN  S +      + +  D + GQS + Q+   +         P +E ++ +      
Sbjct: 547 TGSN-VSAFGWHGVGDASIIDGTRGQSLVHQSGSGLF-------GPSIEGFAGLPNSSPA 605

Query: 301 TTSNH---FDLYHFADA 313
             +N     DLY FADA
Sbjct: 607 GAANQSSASDLYRFADA 605

[Close]

BLAST of Lsi01G020250 vs. TAIR10
Match: AT3G22440.1 (AT3G22440.1 FRIGIDA-like protein)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-07
Identity = 29/111 (26.13%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           M D+I+ ++   + ++AV   Y  G+ D FPP  +L ++L++  ++    + +   +   
Sbjct: 303 MPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTGRA 362

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGK 112
              V+ ++ ++LK VLKC+E++KL+  +  P   + + +  LEK   E  K
Sbjct: 363 THLVARKEQSALKAVLKCIEEYKLE--EEFPPENLKKRLDQLEKTKTEKRK 411

[Close]

BLAST of Lsi01G020250 vs. TAIR10
Match: AT5G16320.1 (AT5G16320.1 FRIGIDA like 1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 43/168 (25.60%), Postives = 77/168 (45.83%), Query Frame = 1


Query: 4   IIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLRR 63
           +IK ++ + K + AV  +Y  GM D F P  +L S++++C E   +   E   S      
Sbjct: 260 LIKTLLDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAALRVCVEDNYSLKSQNE 319

Query: 64  VSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRKT 123
            S++++++LK ++K ++D  L+        K+ E ++ LEK          + A  KR T
Sbjct: 320 ASDKEVSALKPLIKIIKDQNLE--SEFTQEKVEERVEELEK----------NKALRKRNT 379

Query: 124 DEASTQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKS 172
                Q+   +  KR+R   +    PV   P   LL +  A  + + S
Sbjct: 380 TNPPKQEPQQKGKKRTRDCKNGSQVPV---PSQQLLSRPEALLMPEHS 412

[Close]

BLAST of Lsi01G020250 vs. TAIR10
Match: AT5G48385.1 (AT5G48385.1 FRIGIDA-like protein)

HSP 1 Score: 49.3 bits (116), Expect = 5.6e-06
Identity = 30/104 (28.85%), Postives = 55/104 (52.88%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           M  +I+ ++ + K ++AV++ +AF + + F P  +L S+L E   +   +      S   
Sbjct: 353 MPGVIEVLVNSGKQIDAVNLAFAFELTEQFSPVSLLKSYLIEARRS-SPQGRPGNASPAV 412

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEK 105
               +E +L  LK V+KC+E+H L+  +  P   +H+ I  LEK
Sbjct: 413 QDEFNERELIGLKTVIKCIEEHSLE--EQYPVEPLHKRILQLEK 453

[Close]

BLAST of Lsi01G020250 vs. TAIR10
Match: AT4G14900.1 (AT4G14900.1 FRIGIDA-like protein)

HSP 1 Score: 48.9 bits (115), Expect = 7.3e-06
Identity = 27/111 (24.32%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           M D+I+ ++   + ++AV   +  G+  +FPP  +L ++L++  +      ++   S   
Sbjct: 301 MPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRS 360

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGK 112
              V+ ++ ++L+ VLKC+E++KL+  +  P   + + +  LEK   E  K
Sbjct: 361 AHLVARKEQSALRAVLKCIEEYKLE--EEFPPENLKKRLDQLEKTKTEKRK 409

[Close]

BLAST of Lsi01G020250 vs. NCBI nr
Match: gi|659069372|ref|XP_008449489.1| (PREDICTED: protein FRIGIDA [Cucumis melo])

HSP 1 Score: 590.9 bits (1522), Expect = 1.5e-165
Identity = 308/345 (89.28%), Postives = 325/345 (94.20%), Query Frame = 1


Query: 3   DIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLR 62
           DIIKGM K+SKN+EAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLR
Sbjct: 342 DIIKGMTKSSKNIEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLR 401

Query: 63  RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRK 122
           RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVEL KRMEDNAS+KRK
Sbjct: 402 RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELRKRMEDNASLKRK 461

Query: 123 TDEASTQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSSMPQ 182
           TDEASTQKYLSQEIKRSR+ ASKGGFPVMSYPVNGLLEQ AATFLEDKSCFS+SSSSMPQ
Sbjct: 462 TDEASTQKYLSQEIKRSRL-ASKGGFPVMSYPVNGLLEQNAATFLEDKSCFSTSSSSMPQ 521

Query: 183 KLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSDIGSTISISNAASFPRGMGMGMGRDSN 242
           KLLDGGRA+QLG YQIASSLRGPGL+ET VLP+DIGS I+ + AASFPR  GMG GRDSN
Sbjct: 522 KLLDGGRASQLGNYQIASSLRGPGLLETTVLPADIGSGIT-NAAASFPR--GMGRGRDSN 581

Query: 243 EASIYKMGPTRELAYKDTSVGQSFIQQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTSN 302
           EASIYKMGPTRELAYKD SVGQSFIQQAMPT+ TTPTP PP  VE YSAVDGFMGH+TSN
Sbjct: 582 EASIYKMGPTRELAYKDISVGQSFIQQAMPTLATTPTP-PPTTVEPYSAVDGFMGHSTSN 641

Query: 303 HFDLYHFADAAVFENDAPKSSSTQTGTLSRLRLPPHHHHPPYFYN 348
           +FDLYHFADAAVFEND PK+S++QTGTLSRLRL PH+HHPPYFYN
Sbjct: 642 NFDLYHFADAAVFENDLPKNSTSQTGTLSRLRL-PHNHHPPYFYN 680

[Close]

BLAST of Lsi01G020250 vs. NCBI nr
Match: gi|449453187|ref|XP_004144340.1| (PREDICTED: protein FRIGIDA [Cucumis sativus])

HSP 1 Score: 589.3 bits (1518), Expect = 4.3e-165
Identity = 306/346 (88.44%), Postives = 321/346 (92.77%), Query Frame = 1


Query: 3   DIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLR 62
           DIIKGM K+SKN+EAVDIIYAFGME+VFPPQEILLSFLQECDETWKKRIN+VRGSTMQLR
Sbjct: 270 DIIKGMTKSSKNIEAVDIIYAFGMENVFPPQEILLSFLQECDETWKKRINKVRGSTMQLR 329

Query: 63  RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRK 122
           RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNAS+KRK
Sbjct: 330 RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASLKRK 389

Query: 123 TDEASTQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSSMPQ 182
           TDEASTQKYLSQEIKRSRM+A+KGGFPVMSYPVNGLLEQ A TFLEDKSCFS+SSSSMP 
Sbjct: 390 TDEASTQKYLSQEIKRSRMSANKGGFPVMSYPVNGLLEQNATTFLEDKSCFSTSSSSMPL 449

Query: 183 KLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSD-IGSTISISNAASFPRGMGMGMGRDS 242
           KLLDGGRA+QLG YQIASSLRGPGLVET VLP+D IGS IS + AA FPRGMG G GRDS
Sbjct: 450 KLLDGGRASQLGNYQIASSLRGPGLVETTVLPADIIGSGIS-NAAAPFPRGMGWGRGRDS 509

Query: 243 NEASIYKMGPTRELAYKDTSVGQSFIQQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTS 302
           NEASIYKMGPTRE AYKD SVGQSFIQQAMPT+ TTPTP PP  VE YSAV GFMGH+TS
Sbjct: 510 NEASIYKMGPTREFAYKDISVGQSFIQQAMPTLATTPTP-PPTTVEPYSAVYGFMGHSTS 569

Query: 303 NHFDLYHFADAAVFENDAPKSSSTQTGTLSRLRLPPHHHHPPYFYN 348
           N+FDLYHFADAAVFEND PK+ STQTGTLSRLRL PHHHHP YFYN
Sbjct: 570 NNFDLYHFADAAVFENDLPKNRSTQTGTLSRLRL-PHHHHPSYFYN 612

[Close]

BLAST of Lsi01G020250 vs. NCBI nr
Match: gi|225461850|ref|XP_002283789.1| (PREDICTED: protein FRIGIDA [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 3.0e-33
Identity = 121/345 (35.07%), Postives = 170/345 (49.28%), Query Frame = 1


Query: 3   DIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQLR 62
           D+I+GM+KN  NVEAVD  Y FG+E+ FP  +IL SFL+E  E WK+   E   S ++L+
Sbjct: 283 DVIQGMIKNQMNVEAVDFAYTFGLEEKFPIWKILTSFLREHKEEWKRTREE--DSPIRLK 342

Query: 63  RVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMKRK 122
           + +E  L+++K V +CLEDH++DP K L GW I E I  LEK++ +L K+ME    +KRK
Sbjct: 343 KANENYLSAMKSVTRCLEDHRVDPSKLLSGWHIDEKIIQLEKEMADLDKKMEGKVMLKRK 402

Query: 123 TDEA-STQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSSMP 182
            DE  S +K  ++EIK S +AA           V GL EQ+ A  +  +S +    S+MP
Sbjct: 403 ADEIDSLKKMKTREIKHSPIAAPSS--------VIGLQEQRVADNMASRSFY---DSTMP 462

Query: 183 QKLLDGGRAAQLGTYQIASS-LRGPGLVETKVLPSDIGSTISISNAASFPRGMGMGMGR- 242
              LD G    + TY  AS+ L G G      LP +I  T+S S + +   G G G G  
Sbjct: 463 INFLDSGFPGHISTYPAASAMLHGSG---GGSLPENITGTMSGSGSGTRVHGTGTGPGMA 522

Query: 243 --------------------DSNEASIYKMGP----TRELAYKDTSVGQSFI-------- 302
                               D     +   GP     R++ + D  +GQSFI        
Sbjct: 523 GTGGVPSMASFSGAHGEMLFDRTGQMMKNNGPPYAGRRDMGFNDRVIGQSFIAHPASMGV 582

Query: 303 QQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTSNHFDLYHFADA 313
                  T+  +    P   S +A +G      S+  DLY FADA
Sbjct: 583 DSIFGPSTSMESFPGMPNAPSINAANG------SSASDLYQFADA 605

[Close]

BLAST of Lsi01G020250 vs. NCBI nr
Match: gi|802770094|ref|XP_012090538.1| (PREDICTED: protein FRIGIDA [Jatropha curcas])

HSP 1 Score: 146.4 bits (368), Expect = 9.5e-32
Identity = 112/333 (33.63%), Postives = 170/333 (51.05%), Query Frame = 1


Query: 1   MKDIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQ 60
           + DI++ MM +   +EAVD+ Y FG+E  FPPQ++L SFL++ +E  K+R  E   S + 
Sbjct: 333 ISDILERMMNHGAKIEAVDVAYTFGVEKKFPPQKLLTSFLRDSNEALKRRKREANISPIV 392

Query: 61  LRRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMEDNASMK 120
           L+  SE+++A+LK V+K LED K DP K LPGW++ EMI  LEK+I ++ K++ D  + K
Sbjct: 393 LKEASEKQVAALKTVIKLLEDRKFDPTKLLPGWQLREMIDKLEKEIGDINKKIADKVTPK 452

Query: 121 RKTDEASTQKYL-SQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFSSSSSS 180
           RK DE      L SQE KRSR      G P++S P  GL EQ+AA  ++  S F   S+S
Sbjct: 453 RKADENEFASNLRSQETKRSRFT----GSPLISSPSIGLHEQRAAGHVDGNSLF---SAS 512

Query: 181 MPQKLLDGGRAAQLGTYQIASSLRGPGLVETKVLPSD-IGSTISISNAASFPRGMGMGMG 240
           +   LLDGG + Q  T   AS+   P       LP   IG    +    S  +G G+G+ 
Sbjct: 513 LRMNLLDGGFSGQ--TNNPASAGPMPYGYSVPSLPEHAIG---MVKGGGSILQGAGVGLS 572

Query: 241 RDSNEASIYKMGPTRELAYKDTSV--------------GQSFIQ--QAMPTITTTPTPTP 300
              +  +    G  +E+  ++  +              G S++        +    +   
Sbjct: 573 TGYSAPTSSFSGVHKEMLDRNGQIMGRNGPPYGWHGVGGSSYVDGPHGQSFVHQPASGLF 632

Query: 301 PPPVESYSAVDGFM---GHTTSNHFDLYHFADA 313
            P +E ++ +       G   ++  DLY FADA
Sbjct: 633 SPSIEGFAGLPNSPPTGGANRNSTSDLYRFADA 653

[Close]

BLAST of Lsi01G020250 vs. NCBI nr
Match: gi|147844133|emb|CAN80567.1| (hypothetical protein VITISV_004504 [Vitis vinifera])

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 121/352 (34.38%), Postives = 170/352 (48.30%), Query Frame = 1


Query: 3    DIIKGMMKNSKNVEAVDIIYAFGMEDVFPPQEILLSFLQECDETWKKRINEVRGSTMQL- 62
            D+I+GM+KN  NVEAVD  Y FG+E+ FP  +IL SFL+E  E WK+   E   S ++L 
Sbjct: 1294 DVIQGMIKNQMNVEAVDFAYTFGLEEKFPIWKILTSFLREHKEEWKRTREE--DSPIRLF 1353

Query: 63   ------RRVSEEKLASLKCVLKCLEDHKLDPVKSLPGWKIHEMIKNLEKDIVELGKRMED 122
                  ++ +E  L+++K V +CLEDH++DP K L GW I E I  LEK++ +L K+ME 
Sbjct: 1354 YVVYLQKKANENYLSAMKSVTRCLEDHRVDPSKLLSGWHIDEKIIQLEKEMADLDKKMEG 1413

Query: 123  NASMKRKTDEA-STQKYLSQEIKRSRMAASKGGFPVMSYPVNGLLEQKAATFLEDKSCFS 182
               +KRK DE  S +K  ++EIK S +AA           V GL EQ+ A  +  +S + 
Sbjct: 1414 KVMLKRKADEIDSLKKMKTREIKHSPIAAPSS--------VIGLQEQRVADNMASRSFY- 1473

Query: 183  SSSSSMPQKLLDGGRAAQLGTYQIASS-LRGPGLVETKVLPSDIGSTISISNAASFPRGM 242
               S+MP   LD G    + TY  AS+ L G G      LP +I  T+S S + +   G 
Sbjct: 1474 --DSTMPINFLDSGFPGHISTYPAASAMLHGSG---GGSLPENITGTMSGSGSGTRVHGT 1533

Query: 243  GMGMGR---------------------DSNEASIYKMGP----TRELAYKDTSVGQSFI- 302
            G G G                      D     +   GP     R++ + D  +GQSFI 
Sbjct: 1534 GTGPGMAGTGGVPSMASFSGAHGEMLFDRTGQMMKNNGPPYAGRRDMGFNDRVIGQSFIA 1593

Query: 303  -------QQAMPTITTTPTPTPPPPVESYSAVDGFMGHTTSNHFDLYHFADA 313
                          T+  +    P   S +A +G      S+  DLY FADA
Sbjct: 1594 HPASMGVDSIFGPSTSMESFPGMPNAPSINAANG------SSASDLYQFADA 1623

The following BLAST results are available for this feature:

BLAST of Lsi01G020250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FRIGI_ARATH	2.9e-20	37.86	Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1	[more]
FRL4A_ARATH	5.3e-06	26.13	FRIGIDA-like protein 4a OS=Arabidopsis thaliana GN=FRL4A PE=2 SV=1	[more]

BLAST of Lsi01G020250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYX9_CUCSA	3.0e-165	88.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437530 PE=4 SV=1	[more]
A0A067JI55_JATCU	6.6e-32	33.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26334 PE=4 SV=1	[more]
A5AYD6_VITVI	2.5e-31	34.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004504 PE=4 SV=1	[more]
K7KVE1_SOYBN	5.6e-31	34.07	Uncharacterized protein OS=Glycine max GN=GLYMA_06G162100 PE=4 SV=1	[more]
B9RA29_RICCO	1.1e-29	32.49	Protein FRIGIDA, putative OS=Ricinus communis GN=RCOM_1502940 PE=4 SV=1	[more]

BLAST of Lsi01G020250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22440.1	3.0e-07	26.13	FRIGIDA-like protein	[more]
AT5G16320.1	1.1e-06	25.60	FRIGIDA like 1	[more]
AT5G48385.1	5.6e-06	28.85	FRIGIDA-like protein	[more]
AT4G14900.1	7.3e-06	24.32	FRIGIDA-like protein	[more]

BLAST of Lsi01G020250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069372\|ref\|XP_008449489.1\|	1.5e-165	89.28	PREDICTED: protein FRIGIDA [Cucumis melo]	[more]
gi\|449453187\|ref\|XP_004144340.1\|	4.3e-165	88.44	PREDICTED: protein FRIGIDA [Cucumis sativus]	[more]
gi\|225461850\|ref\|XP_002283789.1\|	3.0e-33	35.07	PREDICTED: protein FRIGIDA [Vitis vinifera]	[more]
gi\|802770094\|ref\|XP_012090538.1\|	9.5e-32	33.63	PREDICTED: protein FRIGIDA [Jatropha curcas]	[more]
gi\|147844133\|emb\|CAN80567.1\|	3.6e-31	34.38	hypothetical protein VITISV_004504 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012474	Frigida

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009908	flower development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020250.1	Lsi01G020250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012474	Frigida-like	PFAM	PF07899	Frigida	coord: 1..110 score: 2.6
None	No IPR available	PANTHER	PTHR31791	FAMILY NOT NAMED	coord: 1..142 score: 8.7
None	No IPR available	PANTHER	PTHR31791:SF3	SUBFAMILY NOT NAMED	coord: 1..142 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G020250	Csa4G437530	Cucumber (Chinese Long) v2	culsiB251
Lsi01G020250	CSPI04G19440	Wild cucumber (PI 183967)	cpilsiB249
Lsi01G020250	Cucsa.169900	Cucumber (Gy14) v1	cgylsiB283
Lsi01G020250	CmaCh03G000010	Cucurbita maxima (Rimu)	cmalsiB599
Lsi01G020250	CmoCh03G000200	Cucurbita moschata (Rifu)	cmolsiB589
Lsi01G020250	Cla006106	Watermelon (97103) v1	lsiwmB149
Lsi01G020250	MELO3C003262	Melon (DHL92) v3.5.1	lsimeB153
Lsi01G020250	ClCG04G003180	Watermelon (Charleston Gray)	lsiwcgB138
Lsi01G020250	MELO3C003262.2	Melon (DHL92) v3.6.1	lsimedB160
Lsi01G020250	Cp4.1LG10g12300	Cucurbita pepo (Zucchini)	cpelsiB050
Lsi01G020250	CsGy4G018330	Cucumber (Gy14) v2	cgyblsiB238
Lsi01G020250	Carg26108	Silver-seed gourd	carlsiB470
Lsi01G020250	CsaV3_4G029810	Cucumber (Chinese Long) v3	cuclsiB274

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G020250	Silver-seed gourd	carlsiB430
Lsi01G020250	Watermelon (97103) v2	lsiwmbB136
Lsi01G020250	Wax gourd	lsiwgoB173
Lsi01G020250	Cucurbita maxima (Rimu)	cmalsiB789
Lsi01G020250	Cucurbita maxima (Rimu)	cmalsiB795
Lsi01G020250	Cucurbita moschata (Rifu)	cmolsiB775
Lsi01G020250	Cucurbita pepo (Zucchini)	cpelsiB399