Lsi01G019910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	PAD4
Location	chr01 : 26664137 .. 26664695 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACATTTCCCCTCAATTTCAAGAGAGAGAGAGAAAGAAGAAGAAAAACAGAGAGCTTTGAAGTTGCATCTATGGAGTCCGAAGCTTCAACGTAATTTAATTCAATTTTTTCCTACTTTCAATTTTTTCAACTCTCTTTTCAATTCCCCAATTTCCCTTTTCTTTTCTTTTCAGATTCGAAAGTTGTGAGATTATGGCGGCTCTTTTGGGTTCCAGTCCTCTGCTTCTGCAGTCCTGGAGCCTCTGCGCCACCGCTAACGCCGCCGTACCGGAGAGTTTCACGGCGGAGGTCATTGGAGATGTGGCTTATGTTGCTTTCTCCGGCGTCCAAATTCTTCCGAGATGCGGCGGCGGAAGAGAGTTGGTGACGTTGGATGCTGGAGGAGTTGAGGAGCTGTTTTGGCCGTTGAACCGCCACCGTGAGGAGCTCCGGGAACCGGCCATGGCGGATTCCGGCATCCTCAAAATCTTTGTTCATATTTATACTCATCACAATCTTCTTGAAAAGGTCAGTTTTCAAGTCTCTTCACTTTCTTTACAACTTTTATGCTCACTTTAA

mRNA sequence

CCACATTTCCCCTCAATTTCAAGAGAGAGAGAGAAAGAAGAAGAAAAACAGAGAGCTTTGAAGTTGCATCTATGGAGTCCGAAGCTTCAACATTCGAAAGTTGTGAGATTATGGCGGCTCTTTTGGGTTCCAGTCCTCTGCTTCTGCAGTCCTGGAGCCTCTGCGCCACCGCTAACGCCGCCGTACCGGAGAGTTTCACGGCGGAGGTCATTGGAGATGTGGCTTATGTTGCTTTCTCCGGCGTCCAAATTCTTCCGAGATGCGGCGGCGGAAGAGAGTTGGTGACGTTGGATGCTGGAGGAGTTGAGGAGCTGTTTTGGCCGTTGAACCGCCACCGTGAGGAGCTCCGGGAACCGGCCATGGCGGATTCCGGCATCCTCAAAATCTTTGTTCATATTTATACTCATCACAATCTTCTTGAAAAGGTCAGTTTTCAAGTCTCTTCACTTTCTTTACAACTTTTATGCTCACTTTAA

Coding sequence (CDS)

ATGGAGTCCGAAGCTTCAACATTCGAAAGTTGTGAGATTATGGCGGCTCTTTTGGGTTCCAGTCCTCTGCTTCTGCAGTCCTGGAGCCTCTGCGCCACCGCTAACGCCGCCGTACCGGAGAGTTTCACGGCGGAGGTCATTGGAGATGTGGCTTATGTTGCTTTCTCCGGCGTCCAAATTCTTCCGAGATGCGGCGGCGGAAGAGAGTTGGTGACGTTGGATGCTGGAGGAGTTGAGGAGCTGTTTTGGCCGTTGAACCGCCACCGTGAGGAGCTCCGGGAACCGGCCATGGCGGATTCCGGCATCCTCAAAATCTTTGTTCATATTTATACTCATCACAATCTTCTTGAAAAGGTCAGTTTTCAAGTCTCTTCACTTTCTTTACAACTTTTATGCTCACTTTAA

Protein sequence

MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQILPRCGGGRELVTLDAGGVEELFWPLNRHREELREPAMADSGILKIFVHIYTHHNLLEKVSFQVSSLSLQLLCSL

Homology

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BLAST of Lsi01G019910 vs. TrEMBL
Match: A0A0A0L3S4_CUCSA (PAD4 OS=Cucumis sativus GN=Csa_4G496760 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-46
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           MESEASTFESC +MAALLGS+PLLLQSW  CA ANAA PESFT  VI DVAYV FSGVQ+
Sbjct: 1   MESEASTFESCHVMAALLGSTPLLLQSWEFCAAANAASPESFTTVVIDDVAYVGFSGVQV 60

Query: 61  LPRC-GGGRELVTLDAGGVE-ELFWPLNRHREELREPAMADSGILKIFVHIYTHHNLLEK 120
           LPRC GGGRELV LD  GVE ELFWPLNRHREEL+EPAMADSGILK+FV IYTH NL+E 
Sbjct: 61  LPRCGGGGRELVALDGEGVEAELFWPLNRHREELQEPAMADSGILKMFVDIYTHKNLVET 120

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BLAST of Lsi01G019910 vs. TrEMBL
Match: A0A068VB12_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008633001 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           ME+EAS+FE  E++A LL S+PLL +SW LC  ANA  P+S+  + +G V Y+AFSG+Q+
Sbjct: 1   MEAEASSFECSEMLATLLASTPLLEESWKLCGQANAEAPQSYGTKQMGHVTYIAFSGIQM 60

Query: 61  L----PRCGGGRELVTLDAGGVEELFWPLNRHREELREPAMADSGILKIFVHIYT 112
           L    P C     LV +++     LF  L+RH E   EP M  +G+L +F+  Y+
Sbjct: 61  LAGLDPSCS---NLVPIES-SANGLFSSLHRHGEG-EEPVMVHAGLLHLFLSFYS 110

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BLAST of Lsi01G019910 vs. TrEMBL
Match: B9H4M4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06970g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.9e-15
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           M++E S+FE+ E++A  L S+PLL +SW LC  ANA  P+ F AE IG + YVAFSG++ 
Sbjct: 1   MDTETSSFETSEMLATFLASTPLLPESWRLCNLANANSPQGFVAEQIGSIGYVAFSGIES 60

Query: 61  LPRCGGG-RELVTLDAGGVEELFWPLNRHREELREPAMADSGILKIFVHIYTHHNLLEKV 120
           +       + LV L  GG   +F PL+ H+ E  EP +    +L+IF +IY   +   +V
Sbjct: 61  VSGSDPSFKNLVPLPDGG-NSMFHPLH-HQTEGEEPVLVQGALLRIFENIYKDPSFQNQV 119

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BLAST of Lsi01G019910 vs. TrEMBL
Match: A0A067KC85_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19288 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           M++EAS FES E++A+ L S+PLL +SW LC  AN   P SF  + IG V YVAFSG+Q 
Sbjct: 1   MDTEASPFESSEMLASFLASTPLLSESWRLCDLANTTSPHSFVTKQIGTVGYVAFSGIQE 60

Query: 61  LPRCGGGRELVTLDAGGVEELFWPL-----NRHREELREPAMADSGILKIFVHIYTHHNL 120
              C     L  L +    +LF PL     +   EE  E  M    +L+IF+ I+++ N 
Sbjct: 61  PTSC---TNLEPLHSDITNDLFCPLQNRNEDEEEEEREETVMVHGSLLQIFLSIHSNQNF 120

Query: 121 LEKVSF 122
             +  F
Sbjct: 121 RNQTMF 123

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BLAST of Lsi01G019910 vs. TrEMBL
Match: U5G3U6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04680g PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           M++E S FE+ E++A  L S+PLL +SW LC  A A  P+SF  + +G + YVAFSG   
Sbjct: 1   MDTETSPFETSEMLADFLASTPLLSESWRLCNLATANSPQSFVVDQVGSIGYVAFSGTLF 60

Query: 61  LPRCGGG-RELVTLDAGGV--EELFWPLNRHREELREPAMADSGILKIFVHIYTHHNLLE 120
           +       + LV L    V   +LF PL+  + E  EP M    +L+IF +IY+  +   
Sbjct: 61  VSGSDPSFKNLVRLPVHDVAGNDLFVPLH-DQNEGEEPVMVQGALLRIFENIYSDPSFQN 120

Query: 121 KVSF 122
           +VSF
Sbjct: 121 QVSF 123

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BLAST of Lsi01G019910 vs. NCBI nr
Match: gi|778694921|ref|XP_011653897.1| (PREDICTED: lipase-like PAD4 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           MESEASTFESC +MAALLGS+PLLLQSW  CA ANAA PESFT  VI DVAYV FSGVQ+
Sbjct: 1   MESEASTFESCHVMAALLGSTPLLLQSWEFCAAANAASPESFTTVVIDDVAYVGFSGVQV 60

Query: 61  LPRC-GGGRELVTLDAGGVE-ELFWPLNRHREELREPAMADSGILKIFVHIYTHHNLLEK 120
           LPRC GGGRELV LD  GVE ELFWPLNRHREEL+EPAMADSGILK+FV IYTH NL+E 
Sbjct: 61  LPRCGGGGRELVALDGEGVEAELFWPLNRHREELQEPAMADSGILKMFVDIYTHKNLVET 120

[Close]

BLAST of Lsi01G019910 vs. NCBI nr
Match: gi|659083007|ref|XP_008442139.1| (PREDICTED: senescence-associated carboxylesterase 101 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 95/123 (77.24%), Postives = 103/123 (83.74%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           MESEASTFESC +MAALLGS+PLLLQSW  CA ANAA PESFT  VI DVAYVAFSGVQ+
Sbjct: 1   MESEASTFESCHVMAALLGSTPLLLQSWEFCAAANAASPESFTTLVIDDVAYVAFSGVQV 60

Query: 61  LPRCGGG--RELVTLDAGGVE-ELFWPLNRHREELREPAMADSGILKIFVHIYTHHNLLE 120
           LP CGGG  RELV LD  GVE ELFWPL RHREEL+EPAMADSGILK+FV IY H NL+E
Sbjct: 61  LPGCGGGRVRELVALDGEGVEGELFWPLKRHREELQEPAMADSGILKMFVDIYAHKNLVE 120

[Close]

BLAST of Lsi01G019910 vs. NCBI nr
Match: gi|1009172596|ref|XP_015867358.1| (PREDICTED: lipase-like PAD4 [Ziziphus jujuba])

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-17
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           ME+EAS FE+ E+++  L S+PLL ++W LC+ AN   P SF  E+IGDV YVAFSG+Q+
Sbjct: 1   MEAEASPFETSEMLSTFLASTPLLSEAWRLCSLANTTAPMSFVTELIGDVGYVAFSGIQM 60

Query: 61  --LPRCGGGRELVTLDAGG--VEELFWPLNRHREELREPAMADSGILKIF 107
             +      RE+V L++ G  +E  F PL   R E  EP M   G+LK+F
Sbjct: 61  VDVSEPASCREMVPLESAGGLIENPFHPLLSARNEDEEPLMVHGGLLKLF 110

[Close]

BLAST of Lsi01G019910 vs. NCBI nr
Match: gi|702451631|ref|XP_010025747.1| (PREDICTED: lipase-like PAD4 [Eucalyptus grandis])

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           M++EAS+FE+ EI+   L S+PLL ++W LC+TANA    +F  E +G V YVA SGVQ 
Sbjct: 1   MDAEASSFETSEILGTFLTSTPLLKEAWRLCSTANAMGCGAFVVEQVGGVGYVAISGVQE 60

Query: 61  LPRCGGGRE---LVTLDAGGVEELFWPLNRHREELREPAMADSGILKIFVHIYTHHN 115
           LP  G       LV+LDA G   LF PL ++R +  EP M  SG+L++F+H   HH+
Sbjct: 61  LPMLGWDPNYGMLVSLDAAG-HGLFPPL-KYRYDGEEPVMVHSGVLRLFLH---HHS 112

[Close]

BLAST of Lsi01G019910 vs. NCBI nr
Match: gi|661878201|emb|CDP18030.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-15
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 1   MESEASTFESCEIMAALLGSSPLLLQSWSLCATANAAVPESFTAEVIGDVAYVAFSGVQI 60
           ME+EAS+FE  E++A LL S+PLL +SW LC  ANA  P+S+  + +G V Y+AFSG+Q+
Sbjct: 1   MEAEASSFECSEMLATLLASTPLLEESWKLCGQANAEAPQSYGTKQMGHVTYIAFSGIQM 60

Query: 61  L----PRCGGGRELVTLDAGGVEELFWPLNRHREELREPAMADSGILKIFVHIYT 112
           L    P C     LV +++     LF  L+RH E   EP M  +G+L +F+  Y+
Sbjct: 61  LAGLDPSCS---NLVPIES-SANGLFSSLHRHGEG-EEPVMVHAGLLHLFLSFYS 110

The following BLAST results are available for this feature:

BLAST of Lsi01G019910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G019910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S4_CUCSA	7.0e-46	79.51	PAD4 OS=Cucumis sativus GN=Csa_4G496760 PE=4 SV=1	[more]
A0A068VB12_COFCA	3.7e-15	43.48	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008633001 PE=4 SV=1	[more]
B9H4M4_POPTR	4.9e-15	41.32	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06970g PE=4 SV=1	[more]
A0A067KC85_JATCU	2.4e-14	39.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19288 PE=4 SV=1	[more]
U5G3U6_POPTR	2.3e-12	38.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04680g PE=4 SV=1	[more]

BLAST of Lsi01G019910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G019910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694921\|ref\|XP_011653897.1\|	1.0e-45	79.51	PREDICTED: lipase-like PAD4 [Cucumis sativus]	[more]
gi\|659083007\|ref\|XP_008442139.1\|	1.2e-43	77.24	PREDICTED: senescence-associated carboxylesterase 101 [Cucumis melo]	[more]
gi\|1009172596\|ref\|XP_015867358.1\|	4.4e-17	46.36	PREDICTED: lipase-like PAD4 [Ziziphus jujuba]	[more]
gi\|702451631\|ref\|XP_010025747.1\|	4.8e-16	47.01	PREDICTED: lipase-like PAD4 [Eucalyptus grandis]	[more]
gi\|661878201\|emb\|CDP18030.1\|	5.3e-15	43.48	unnamed protein product [Coffea canephora]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0008150	biological_process
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0010225	response to UV-C
biological_process	GO:0009625	response to insect
biological_process	GO:0001666	response to hypoxia
biological_process	GO:0080142	regulation of salicylic acid biosynthetic process
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0080151	positive regulation of salicylic acid mediated signaling pathway
biological_process	GO:1900367	positive regulation of defense response to insect
biological_process	GO:1900426	positive regulation of defense response to bacterium
biological_process	GO:0010942	positive regulation of cell death
biological_process	GO:1901183	positive regulation of camalexin biosynthetic process
biological_process	GO:0010105	negative regulation of ethylene-activated signaling pathway
biological_process	GO:0010150	leaf senescence
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0010941	regulation of cell death
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0098542	defense response to other organism
biological_process	GO:0045087	innate immune response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0009617	response to bacterium
biological_process	GO:0009719	response to endogenous stimulus
biological_process	GO:0007165	signal transduction
biological_process	GO:0010618	aerenchyma formation
biological_process	GO:0071327	cellular response to trehalose stimulus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019910.1	Lsi01G019910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019910	Csa4G496760	Cucumber (Chinese Long) v2	culsiB250
Lsi01G019910	CSPI04G20000	Wild cucumber (PI 183967)	cpilsiB250
Lsi01G019910	Cucsa.353810	Cucumber (Gy14) v1	cgylsiB572
Lsi01G019910	CmaCh07G012740	Cucurbita maxima (Rimu)	cmalsiB788
Lsi01G019910	CmoCh07G013120	Cucurbita moschata (Rifu)	cmolsiB776
Lsi01G019910	Cla011657	Watermelon (97103) v1	lsiwmB146
Lsi01G019910	MELO3C008938	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019910	ClCG04G001930	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019910	MELO3C008938.2	Melon (DHL92) v3.6.1	lsimedB159
Lsi01G019910	Cla97C04G069670	Watermelon (97103) v2	lsiwmbB133
Lsi01G019910	Bhi03G002289	Wax gourd	lsiwgoB173
Lsi01G019910	Cp4.1LG19g01060	Cucurbita pepo (Zucchini)	cpelsiB400
Lsi01G019910	CsGy4G019080	Cucumber (Gy14) v2	cgyblsiB243
Lsi01G019910	Carg12699	Silver-seed gourd	carlsiB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019910	Silver-seed gourd	carlsiB259
Lsi01G019910	Silver-seed gourd	carlsiB260
Lsi01G019910	Silver-seed gourd	carlsiB430
Lsi01G019910	Cucumber (Chinese Long) v3	cuclsiB279
Lsi01G019910	Watermelon (97103) v2	lsiwmbB136
Lsi01G019910	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019910	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G019910	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019910	Cucurbita pepo (Zucchini)	cpelsiB399