Lsi01G016420 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G016420
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	PR domain zinc finger protein 8, putative isoform 1
Location	chr01 : 14872058 .. 14872765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGCGCGATGTACTGATGAATCTAAGGAATCAGAAAATTCATCTACCAAATGTTGTAGTAAAGTTGAAGCTCAGCCGGAGATTGTTGAGCTAAGGGCTCCTATTGGACCTTCAACGCCTGATGCTGATAGAGAGAGTTGTGATTTTCCTTCTGATTGTAAATCCCCACTCACTCAGGTTGTGACTAGCAAACCTCTTCTGTTAACTTGTGTAGATTCTTTAGGTGAAAGGGCTGAAGCCCCTTTAGAGAGTTCTGATTCTTTTGATCCTCTTTGTAGCCCTCGTACTCCTAAGGATGGTGTTTTTGATCCCTTTTCCCCTGCCCCTGCTCATTTGGCTTTAGCTCCTCTCTCTAGAAAGTGTTTTACTGGCTCTGTTGGATTTGTTGCTCGCCGCCTTCAATTTGGTTCTTCTTCTTCTTCTTCTTCATTGCAGTTAGTGGAAGCTGAAGAAGAACAATCCATCTCTGATAGTGAGCTGTTGGAGGCAGTTTATGAGAATCTCTTGGAAGTTATTGTTTCCCATCAAGCTGAGTCTTCTCTTGCTCAGCTCTCAAGCTCTCAAAATGATTCGCTTGATTGTAATACCCCTCCTACTTCGTTTATGAGTGGGGTTGCTCAAACTTGTCCTCCTGCGCCGGTTAAGCCTTCGAGAAAATTGCGAAATCTCGACATGGGTTTGTGCAGAAAGCTTGAGTTCTGA

mRNA sequence

ATGGATTTTGCGCGATGTACTGATGAATCTAAGGAATCAGAAAATTCATCTACCAAATGTTGTAGTAAAGTTGAAGCTCAGCCGGAGATTGTTGAGCTAAGGGCTCCTATTGGACCTTCAACGCCTGATGCTGATAGAGAGAGTTGTGATTTTCCTTCTGATTGTAAATCCCCACTCACTCAGGTTGTGACTAGCAAACCTCTTCTGTTAACTTGTGTAGATTCTTTAGGTGAAAGGGCTGAAGCCCCTTTAGAGAGTTCTGATTCTTTTGATCCTCTTTGTAGCCCTCGTACTCCTAAGGATGGTGTTTTTGATCCCTTTTCCCCTGCCCCTGCTCATTTGGCTTTAGCTCCTCTCTCTAGAAAGTGTTTTACTGGCTCTGTTGGATTTGTTGCTCGCCGCCTTCAATTTGGTTCTTCTTCTTCTTCTTCTTCATTGCAGTTAGTGGAAGCTGAAGAAGAACAATCCATCTCTGATAGTGAGCTGTTGGAGGCAGTTTATGAGAATCTCTTGGAAGTTATTGTTTCCCATCAAGCTGAGTCTTCTCTTGCTCAGCTCTCAAGCTCTCAAAATGATTCGCTTGATTGTAATACCCCTCCTACTTCGTTTATGAGTGGGGTTGCTCAAACTTGTCCTCCTGCGCCGGTTAAGCCTTCGAGAAAATTGCGAAATCTCGACATGGGTTTGTGCAGAAAGCTTGAGTTCTGA

Coding sequence (CDS)

ATGGATTTTGCGCGATGTACTGATGAATCTAAGGAATCAGAAAATTCATCTACCAAATGTTGTAGTAAAGTTGAAGCTCAGCCGGAGATTGTTGAGCTAAGGGCTCCTATTGGACCTTCAACGCCTGATGCTGATAGAGAGAGTTGTGATTTTCCTTCTGATTGTAAATCCCCACTCACTCAGGTTGTGACTAGCAAACCTCTTCTGTTAACTTGTGTAGATTCTTTAGGTGAAAGGGCTGAAGCCCCTTTAGAGAGTTCTGATTCTTTTGATCCTCTTTGTAGCCCTCGTACTCCTAAGGATGGTGTTTTTGATCCCTTTTCCCCTGCCCCTGCTCATTTGGCTTTAGCTCCTCTCTCTAGAAAGTGTTTTACTGGCTCTGTTGGATTTGTTGCTCGCCGCCTTCAATTTGGTTCTTCTTCTTCTTCTTCTTCATTGCAGTTAGTGGAAGCTGAAGAAGAACAATCCATCTCTGATAGTGAGCTGTTGGAGGCAGTTTATGAGAATCTCTTGGAAGTTATTGTTTCCCATCAAGCTGAGTCTTCTCTTGCTCAGCTCTCAAGCTCTCAAAATGATTCGCTTGATTGTAATACCCCTCCTACTTCGTTTATGAGTGGGGTTGCTCAAACTTGTCCTCCTGCGCCGGTTAAGCCTTCGAGAAAATTGCGAAATCTCGACATGGGTTTGTGCAGAAAGCTTGAGTTCTGA

Protein sequence

MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF

Homology

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BLAST of Lsi01G016420 vs. Swiss-Prot
Match: UP1_HELAN (Unknown protein 1 OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-07
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 123 CFTGSVGFVARRLQFGSSSSSSSLQLVEAE--EEQSISDSELLEAVYENLLEVIVSHQAE 182
           C +GS     ++   G+S++   L     E   E    +  L+E VYE++LE I+  QAE
Sbjct: 65  CVSGS----NQKNNLGTSAAKKKLVFSSNEYVSENECENGSLMETVYESVLEDIICKQAE 124

Query: 183 SSLAQLSSSQNDSLDCNTPPTSFMS-GVAQTCPPAPVKPS--RKLRNLDMGLCRKLEF 236
             LA++  S +      TPP++  + G+ +TCP AP+K    R  R +DM LCRKL+F
Sbjct: 125 DILAEILVSGSSRDVLKTPPSAARADGLVETCPGAPMKRKQVRNKRTVDMNLCRKLDF 178

[Close]

BLAST of Lsi01G016420 vs. TrEMBL
Match: A0A0A0KYB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337350 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 7.5e-112
Identity = 217/235 (92.34%), Postives = 222/235 (94.47%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESENSSTKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 1   MDFARCTDESKESENSSTKCCSKVETQVEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 61  QVVTSKPLLLTCLDSLGERTEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQLSSSQ+DS DCNTPPTSFMSGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 181 SSLAQLSSSQSDSPDCNTPPTSFMSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 233

[Close]

BLAST of Lsi01G016420 vs. TrEMBL
Match: A0A067FM19_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026739mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 103/248 (41.53%), Postives = 136/248 (54.84%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEA---------QPEIVELRAPIGPSTPDADRESCDF 60
           MD   C D+S + +  S     K++             +    AP GP TP   RE  D 
Sbjct: 1   MDSGACADQSNQCQGLSRNFSEKLDEVRNKEAAVDSSTMAGEAAPQGPITPVLKREVVDV 60

Query: 61  PSDCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAP 120
           P DC SPLT+       ++  +    + A      +D      SPRTPKD VFDPF+P P
Sbjct: 61  PFDCDSPLTEATKVSLFVVETITKEDQVASV----NDG-----SPRTPKDVVFDPFAPGP 120

Query: 121 AHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVE----AEEEQSISDSELLEAVY 180
            HLA+APL +K         ARRL F      SSL+L+E     ++ +SISD E+ E+VY
Sbjct: 121 DHLAMAPLCKKYVCQMKTSAARRLNF-----DSSLKLMEDSTDVDDMESISDEEMFESVY 180

Query: 181 ENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDM 236
            NLLE IVS QAE  L ++S+ + D   C TPPT+ +SG+A+TCP AP+KPS K R +D+
Sbjct: 181 NNLLEAIVSKQAEDLLTEISNVEWDPDSCKTPPTTQLSGIAETCPGAPMKPSAKSRKIDL 234

[Close]

BLAST of Lsi01G016420 vs. TrEMBL
Match: V4S617_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012636mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 103/248 (41.53%), Postives = 136/248 (54.84%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEA---------QPEIVELRAPIGPSTPDADRESCDF 60
           MD   C D+S + +  S     K++             +    AP GP TP   RE  D 
Sbjct: 1   MDSGACADQSNQCQGLSRNFSEKLDEVRNKEAAVDSSTMAGEAAPQGPITPVLKREVVDV 60

Query: 61  PSDCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAP 120
           P DC SPLT+       ++  +    + A      +D      SPRTPKD VFDPF+P P
Sbjct: 61  PFDCDSPLTEATKVSLFVVETITKEDQVASV----NDG-----SPRTPKDVVFDPFAPGP 120

Query: 121 AHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVE----AEEEQSISDSELLEAVY 180
            HLA+APL +K         ARRL F      SSL+L+E     ++ +SISD E+ E+VY
Sbjct: 121 DHLAMAPLCKKYVCQMKTSAARRLNF-----DSSLKLMEDSTDVDDMESISDEEMFESVY 180

Query: 181 ENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDM 236
            NLLE IVS QAE  L ++S+ + D   C TPPT+ +SG+A+TCP AP+KPS K R +D+
Sbjct: 181 NNLLEAIVSKQAEDLLTEISNVEWDPDSCKTPPTTQLSGIAETCPGAPMKPSAKSRKIDL 234

[Close]

BLAST of Lsi01G016420 vs. TrEMBL
Match: A0A067JDC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00614 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-35
Identity = 110/234 (47.01%), Postives = 147/234 (62.82%), Query Frame = 1


Query: 5   RCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLTQVVT 64
           +C D S++S   S +   + EA    VEL   +GP TPD ++E+ DFP D  SPLT  V 
Sbjct: 15  KCQDLSQKSTEISDEISGE-EANNGKVELS--LGPITPDVNKENGDFPLDLSSPLT--VL 74

Query: 65  SKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLSRKCF 124
            K   +   DS  +  + PL S D      SPRTPKDGVFDPF+P P   A+APL +K  
Sbjct: 75  KKLSKVLTFDSKTDLNQDPLASIDDSS---SPRTPKDGVFDPFAPGPDDKAMAPLCKKYS 134

Query: 125 TGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAESSLA 184
             +   VARRL FGSS    S  +   +E +SISD E+ ++VYENLLEVIV +Q E++LA
Sbjct: 135 DEARISVARRLNFGSSIKDLSF-ISPGDEAKSISDEEMFKSVYENLLEVIVYNQTETALA 194

Query: 185 QLSS--SQNDSLDCNTPPTS-FMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           +LS+   + DS  C TPP++  +SGVA+TCP AP+K + K R +D+GLC+KLEF
Sbjct: 195 ELSNMDMEWDSEACTTPPSAPRISGVAETCPGAPLKSTGKSRIIDLGLCKKLEF 239

[Close]

BLAST of Lsi01G016420 vs. TrEMBL
Match: W9SCL9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022770 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 105/246 (42.68%), Postives = 145/246 (58.94%), Query Frame = 1


Query: 6   CTDESKESENSSTKCCSK------VEAQPEIVELRAP-----IGPSTPDADRESCDFPSD 65
           CT++    E+  T    K      VE   E+ E+        +GP TPD+DRE+ DFP  
Sbjct: 6   CTNQVNNFEDLGTNSFKKLDSISVVETHKEVAEISEAHKTDSLGPITPDSDRENGDFPIT 65

Query: 66  CKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHL 125
            KSP + V   K     C DS     E  +E+   FD   SPRTPKDG+FDPF+P P  L
Sbjct: 66  LKSPPSSV--KKRESGVCFDS---ETEQMVENPSCFDDHASPRTPKDGIFDPFAPGPDDL 125

Query: 126 ALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVE----AEEEQSISDSELLEAVYENL 185
           ALAP  RK  + S   VARRL F       S+++++      +  SISD E++EA+YE+L
Sbjct: 126 ALAPQCRKYVSKSRSVVARRLSF-----DFSVKVLDDKDCRNDALSISDEEIVEAMYESL 185

Query: 186 LEVIVSHQAESSLAQLSSSQNDSLDCNTPPTS-FMSGVAQTCPPAPVKPSRKLRNLDMGL 236
           L+ IVS Q E  LA++SS + DS +C TPP++  +SGVA+TCP AP++P+ K R +D+ L
Sbjct: 186 LDTIVSCQTEVVLAEISSLEWDSNNCRTPPSAPHLSGVAETCPGAPLRPAGKSRKIDLAL 241

[Close]

BLAST of Lsi01G016420 vs. TAIR10
Match: AT2G28330.1 (AT2G28330.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = 1


Query: 81  EAPLESSDSFDPLCSPRTPKDGVFD--PFSPAPAHLALAPLSRKCFTGSVGFVARRLQFG 140
           E P E+ ++      P+TP   V D  P   + + L+   +  +   G V       Q  
Sbjct: 4   EEPCEAKETASSSIEPKTPNPNVPDSIPAIDSDSSLSEEEIVTEKDRGIVTLSPLCKQRI 63

Query: 141 SSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQNDSLDCNT 200
            S+S S   LV        SD E++E++Y+NLL VI+S Q   S+A +         C T
Sbjct: 64  DSASISDCVLV--------SDDEIIESLYQNLLRVILSLQQIQSVAVVPEIWCFD-GCKT 123

Query: 201 PPTSFMS----GVAQTCPPAPVKPSRKLRNLDMGLCRKL 234
           PP S  +     V+ TCP AP+K ++  RN+D GL RKL
Sbjct: 124 PPPSSRNLDSNMVSDTCPGAPMKLTKISRNIDSGLRRKL 153

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BLAST of Lsi01G016420 vs. NCBI nr
Match: gi|449449942|ref|XP_004142723.1| (PREDICTED: uncharacterized protein LOC101204540 isoform X1 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 1.1e-111
Identity = 217/235 (92.34%), Postives = 222/235 (94.47%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESENSSTKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 1   MDFARCTDESKESENSSTKCCSKVETQVEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 61  QVVTSKPLLLTCLDSLGERTEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQLSSSQ+DS DCNTPPTSFMSGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 181 SSLAQLSSSQSDSPDCNTPPTSFMSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 233

[Close]

BLAST of Lsi01G016420 vs. NCBI nr
Match: gi|659126676|ref|XP_008463308.1| (PREDICTED: uncharacterized protein LOC103501496 [Cucumis melo])

HSP 1 Score: 404.4 bits (1038), Expect = 1.3e-109
Identity = 214/235 (91.06%), Postives = 220/235 (93.62%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESEN STKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 76  MDFARCTDESKESENLSTKCCSKVETQLEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 135

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 136 QVVTSKPLLLTCLDSLGERIEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 195

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 196 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 255

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQ SSSQ+DS DCNTPPTSF+SGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 256 SSLAQPSSSQSDSPDCNTPPTSFLSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 308

[Close]

BLAST of Lsi01G016420 vs. NCBI nr
Match: gi|778694086|ref|XP_011653738.1| (PREDICTED: unknown protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 6.0e-62
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1


Query: 95  SPRTPKDGVFDPFSPAPAHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEE 154
           SPRTPKDGVFDPFSPAPAHLALAP+SRK F+GSVGFV RRLQFG  SSSSSLQLVEAEEE
Sbjct: 19  SPRTPKDGVFDPFSPAPAHLALAPISRKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEE 78

Query: 155 QSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPA 214
           QSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQ+DS DCNTPPTSFMSGVAQTCP A
Sbjct: 79  QSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQSDSPDCNTPPTSFMSGVAQTCPAA 138

Query: 215 PVKPSRKLRNLDMGLCRKLEF 236
           PVKPSRKLRNLDMGLCRKLEF
Sbjct: 139 PVKPSRKLRNLDMGLCRKLEF 157

[Close]

BLAST of Lsi01G016420 vs. NCBI nr
Match: gi|985452947|ref|XP_015386731.1| (PREDICTED: unknown protein 1 isoform X1 [Citrus sinensis])

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 103/248 (41.53%), Postives = 136/248 (54.84%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEA---------QPEIVELRAPIGPSTPDADRESCDF 60
           MD   C D+S + +  S     K++             +    AP GP TP   RE  D 
Sbjct: 19  MDSGACADQSNQCQGLSRNFSEKLDEVRNKEAAVDSSTMAGEAAPQGPITPVLKREVVDV 78

Query: 61  PSDCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAP 120
           P DC SPLT+       ++  +    + A      +D      SPRTPKD VFDPF+P P
Sbjct: 79  PFDCDSPLTEATKVSLFVVETITKEDQVASV----NDG-----SPRTPKDVVFDPFAPGP 138

Query: 121 AHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVE----AEEEQSISDSELLEAVY 180
            HLA+APL +K         ARRL F      SSL+L+E     ++ +SISD E+ E+VY
Sbjct: 139 DHLAMAPLCKKYVCQMKTSAARRLNF-----DSSLKLMEDSTDVDDMESISDEEMFESVY 198

Query: 181 ENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDM 236
            NLLE IVS QAE  L ++S+ + D   C TPPT+ +SG+A+TCP AP+KPS K R +D+
Sbjct: 199 NNLLEAIVSKQAEDLLTEISNVEWDPDSCKTPPTTQLSGIAETCPGAPMKPSAKSRKIDL 252

[Close]

BLAST of Lsi01G016420 vs. NCBI nr
Match: gi|567874137|ref|XP_006429658.1| (hypothetical protein CICLE_v10012636mg [Citrus clementina])

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 103/248 (41.53%), Postives = 136/248 (54.84%), Query Frame = 1


Query: 1   MDFARCTDESKESENSSTKCCSKVEA---------QPEIVELRAPIGPSTPDADRESCDF 60
           MD   C D+S + +  S     K++             +    AP GP TP   RE  D 
Sbjct: 1   MDSGACADQSNQCQGLSRNFSEKLDEVRNKEAAVDSSTMAGEAAPQGPITPVLKREVVDV 60

Query: 61  PSDCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAP 120
           P DC SPLT+       ++  +    + A      +D      SPRTPKD VFDPF+P P
Sbjct: 61  PFDCDSPLTEATKVSLFVVETITKEDQVASV----NDG-----SPRTPKDVVFDPFAPGP 120

Query: 121 AHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVE----AEEEQSISDSELLEAVY 180
            HLA+APL +K         ARRL F      SSL+L+E     ++ +SISD E+ E+VY
Sbjct: 121 DHLAMAPLCKKYVCQMKTSAARRLNF-----DSSLKLMEDSTDVDDMESISDEEMFESVY 180

Query: 181 ENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDM 236
            NLLE IVS QAE  L ++S+ + D   C TPPT+ +SG+A+TCP AP+KPS K R +D+
Sbjct: 181 NNLLEAIVSKQAEDLLTEISNVEWDPDSCKTPPTTQLSGIAETCPGAPMKPSAKSRKIDL 234

The following BLAST results are available for this feature:

BLAST of Lsi01G016420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UP1_HELAN	9.4e-07	35.59	Unknown protein 1 OS=Helianthus annuus PE=1 SV=1	[more]

BLAST of Lsi01G016420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYB8_CUCSA	7.5e-112	92.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337350 PE=4 SV=1	[more]
A0A067FM19_CITSI	1.5e-35	41.53	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026739mg PE=4 SV=1	[more]
V4S617_9ROSI	1.5e-35	41.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012636mg PE=4 SV=1	[more]
A0A067JDC8_JATCU	2.0e-35	47.01	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00614 PE=4 SV=1	[more]
W9SCL9_9ROSA	2.5e-35	42.68	Uncharacterized protein OS=Morus notabilis GN=L484_022770 PE=4 SV=1	[more]

BLAST of Lsi01G016420 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28330.1	1.7e-06	32.70	unknown protein	[more]

BLAST of Lsi01G016420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449942\|ref\|XP_004142723.1\|	1.1e-111	92.34	PREDICTED: uncharacterized protein LOC101204540 isoform X1 [Cucumis sativus]	[more]
gi\|659126676\|ref\|XP_008463308.1\|	1.3e-109	91.06	PREDICTED: uncharacterized protein LOC103501496 [Cucumis melo]	[more]
gi\|778694086\|ref\|XP_011653738.1\|	6.0e-62	93.62	PREDICTED: unknown protein 1 isoform X2 [Cucumis sativus]	[more]
gi\|985452947\|ref\|XP_015386731.1\|	2.1e-35	41.53	PREDICTED: unknown protein 1 isoform X1 [Citrus sinensis]	[more]
gi\|567874137\|ref\|XP_006429658.1\|	2.1e-35	41.53	hypothetical protein CICLE_v10012636mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G016420.1	Lsi01G016420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36310	FAMILY NOT NAMED	coord: 25..235 score: 1.2
None	No IPR available	PANTHER	PTHR36310:SF1	T6D22.11	coord: 25..235 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G016420	Csa4G337350	Cucumber (Chinese Long) v2	culsiB248
Lsi01G016420	CSPI04G16870	Wild cucumber (PI 183967)	cpilsiB247
Lsi01G016420	Cucsa.130820	Cucumber (Gy14) v1	cgylsiB202
Lsi01G016420	CmaCh03G002680	Cucurbita maxima (Rimu)	cmalsiB601
Lsi01G016420	CmoCh03G002810	Cucurbita moschata (Rifu)	cmolsiB587
Lsi01G016420	Cla012058	Watermelon (97103) v1	lsiwmB152
Lsi01G016420	MELO3C025269	Melon (DHL92) v3.5.1	lsimeB157
Lsi01G016420	ClCG04G006100	Watermelon (Charleston Gray)	lsiwcgB142
Lsi01G016420	MELO3C025269.2	Melon (DHL92) v3.6.1	lsimedB164
Lsi01G016420	Cla97C04G072660	Watermelon (97103) v2	lsiwmbB140
Lsi01G016420	Bhi03G001798	Wax gourd	lsiwgoB169
Lsi01G016420	Carg19542	Silver-seed gourd	carlsiB571
Lsi01G016420	CsaV3_4G027460	Cucumber (Chinese Long) v3	cuclsiB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G016420	Cucurbita maxima (Rimu)	cmalsiB791
Lsi01G016420	Cucurbita moschata (Rifu)	cmolsiB779
Lsi01G016420	Cucurbita pepo (Zucchini)	cpelsiB048
Lsi01G016420	Cucurbita pepo (Zucchini)	cpelsiB391
Lsi01G016420	Cucumber (Gy14) v2	cgyblsiB236
Lsi01G016420	Silver-seed gourd	carlsiB258