Lsi01G016270 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCTTTGTTTGCTTTGTCATAAGCTTGATGGGTTTTTTGAATCTTCTCGTTTTTGTGTGTAGATCATGGCTTCGAAGCGTATCTTGAAGGAACTTAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGTATGGTTCTAAGCCTTGATCTCTTTATTTGGTGACCTATTTTGACCATTTTCTTCGGATTTATTGCGTTTGTTTTGTTGATGGGAATGAATGAGTGAATAAAATGAATTGGTATCTGTTGATTGGTTTTTTTTGTGTTGTTGACCTTTTGATCTGTCTTGATGTGAAGATGTTTATTTGTTTTCTAGTTTTGAGCTTGGGATGTTTTTTTTAGAGATTTTTGTATGGATGACCCAATCGACGCCCTAATCCTAGAAAAACAAATGAAAATTAACCTTCAGCTGATTTCACAAAGCACTATCATGTTTGGAGCGTCTCTCCCATCGGAAAATAGTTGTAGCCCTAACGAGATATTCATTTCATTGCAATTTTTTAAAAATCAACCATTTTTTTTAATTGCAATGATTGAAAATGAAAATCATGAAATGGTCGAGTGAGACGTCCCTAACGTGATAATGGGTGGTAAATTGCTCTATGACGTAAGCAGAATGTTAGTTTTCATTGACTTTTTAGAATTGGTTTATTCAACATTAACTAACGCCGTTGGAATTGGGTCGTCCGTACAAAAATCTTTGTTTTTATTTTATTTTATTTATTTCGTTTGCTTTCGAGGATAGGCCCTGTAGCTGAAGATATGTTCCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTGAATGATGTTTGTCGTTTGTTTGTTGCTCTTAATGATTGCGCAAGATGATTCTATGTTTGTTGTTTCCTTTTCGAATATAATAGGATTGCGAGGTTTAATAGTTATGGATTGTTGTTCAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGATATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCTAAGGTTCGTTTGGCATTTTGTTTCTGAATTCACTCATAGTTCATCATTTTGTTTCAAATTCTCTGGATTGTCATTGTGCTGTTTGCATAAATATAGCTATTTTTGTCATGTTTGAGATCTATATGCTTCTGCCATAGTAAAGTTCTGTGTAGCATGGATGCTTACTCGAAGTTCCCTATTTGATGGAGAATCTTACAACACTTCAGTAGTACTGAAAATTTCACGAACTCGGTTGTGTGGTCTATAATGGACAGCATGTTCAATTTCCATTCTTCGTTTTCTTGGCTGGCTGGTTTGATCACATAAACAGTCTGGATATTTCTTTGAGCCATGGTTTCTTTATGCAATTAGGAGTTCTTTTTTCTGTGAATAATTTGGGTCTCGCTCGACTCCTCGCATTATATTCCCGGGATGGGAGCCATTCCACGGGTAGCTTCGGGGCAGTTGAGAACAGTGGTTGATTTGTGTTTCTACCCCAAAAAGTGTTTGAAGAAGTAGTTGTAGTGTGGCCATTAGTTTGTTTGTTCTACCTTTTCCCTCTCCTTGTCTATATTTAGGAACTACTGCTGTTAAAGTGTAGAAGCCTTCATTTTACCCACATGGCTATTAAATAGCTTAGCTTGATATCTTCACTATGACCTTTTGATCATGGAATAAAATCCCATTTGAGCAGGAAACTCACATTCTCATCAACTTTTTGTTGATTTATGTTCTAGAAATGTTAAAAGTTAAGGTTGACTGACTTTGCGAGAGACCGTAATCATTACCCATCAGTCATGGCCCTCCTGACTGAAAACAAGAGAGAGACTAGAAAATTTTGACTGAGTTAATTCTAAACATAAATGGTGTTCATGAAACAGGTACTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCATATGTACAAGACCGACCGAACCAAGTATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCTATGGGTTGAGACGTTTTTGTAGCTTGATGTTGATGATGGATGATGCTAGTGGTGGTATCTTTGGCATGGCATCCTTATGTATTACCTCGTTTCTTCCAGTTATTTGGGCTGTGTAGGTATTTTAAAGCAGAAAAAAAAAGAAACAAAATATGAAAAAAAAAAAAAAAAGAAAAAGAAGAAAGTCTTGTGATGTTTTTTTCCCCTTTGCCACTGATTTATGAATGAAAGATGCAAGCAGGTTGTGTAAGGTTGTCAAATTAACTGGATTCAACATTCCTCTTTGTGGGGATTTGATGCAAGCAGTTATTTATCTCATAGAGAGTAGCATTGTTCAATTTATCTTTTCTTTTTTTTTTTTTATGGGATTTTTGGTTACCAATCCCTTAAAAAGAAAAGTTTCGGGATGGGGACGGAGATGGGGATTTTCTCTGAAAATTTGTTAAGAATTGGTTTTTTAGGAACATTTTTTATATAATTTTTTTTAATTTATCCATTTATAGATGTTCATTATTAAAGGGAGAATAATGCTATATATGAAAATTTTCCTTGGAATGATATACACATTTTTATTGAAATATGTACTTTCAATATAAACGGTTGTGTAATGTATAATAGGAAAATGGGATGGGATTTAGAATTTGGTTTAGAATTGGCTGTACTTTTTTTTTTGTTCTCATGGCTATTCTCTCTCAAATAGAATGATTGTATATATATGTGTGTGTCAGTGTTTAGGCCGGTTCACGCGCAACACCTCGATTAATCTTACGAATAACCGGTTTAGTCTTTTACAACATTTGGGTGTCATTAACCATTGAAATATGTTATCAAGTTCTAGACCTTCAAAAAATAGGATTGACTTGACATGACGATTGAGTTACTGGATCGATGTAACAAATTAGGGCATGTTGCATATGGAACATTAGATGGAAATTCAAAGTTCTATACATGATGGTCAGGGACTACATCATTTACTATATGGGTTCTTCTACATGATATGCGTTGTCATTTATGTCTTCACCATTAACATTTGCGACTACTTCCTCTCCATCATCACCTGTTTCCCTCTAGGACCAATCGTTAAAATCTTGAGTTTGAGATACATGGTCCACATCATCCCTCAAATTATTCGTCGTCACCATTAACATTTGCGACTACTTCCTCTCCATCATCACCTGTTTCCCTCTAGGACCAATCGTTAAAATCTTGAGTTTGAGATACATGGTCCACATCATCCCTCAAATTATTCGTCG ATGCCCTTTATCATGGCTTCGAAGCGTATCTTGAAGGAACTTAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGATATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCTAAGGTACTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCATATGTACAAGACCGACCGAACCAAGTATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCTATGGGTTGAGACGTTTTTGTAGCTTGATGTTGATGATGGATGATGCTAGTGGTGGTATCTTTGGCATGGCATCCTTATGTATTACCTCGTTTCTTCCAGTTATTTGGGCTGTGTAGGTATTTTAAAGCAGAAAAAAAAAGAAACAAAATATGAAAAAAAAAAAAAAAAGAAAAAGAAGAAAGTCTTGTGATGTTTTTTTCCCCTTTGCCACTGATTTATGAATGAAAGATGCAAGCAGGTTGTGTAAGGTTGTCAAATTAACTGGATTCAACATTCCTCTTTGTGGGGATTTGATGCAAGCAGTTATTTATCTCATAGAGAGTAGCATTGTTCAATTTATCTTTTCTTTTTTTTTTTTTATGGGATTTTTGGTTACCAATCCCTTAAAAAGAAAAGTTTCGGGATGGGGACGGAGATGGGGATTTTCTCTGAAAATTTGTTAAGAATTGGTTTTTTAGGAACATTTTTTATATAATTTTTTTTAATTTATCCATTTATAGATGTTCATTATTAAAGGGAGAATAATGCTATATATGAAAATTTTCCTTGGAATGATATACACATTTTTATTGAAATATGTACTTTCAATATAAACGGTTGTGTAATGTATAATAGGAAAATGGGATGGGATTTAGAATTTGGTTTAGAATTGGCTGTACTTTTTTTTTTGTTCTCATGGCTATTCTCTCTCAAATAGAATGATTGTATATATATGTGTGTGTCAGTGTTTAGGCCGGTTCACGCGCAACACCTCGATTAATCTTACGAATAACCGGTTTAGTCTTTTACAACATTTGGGTGTCATTAACCATTGAAATATGTTATCAAGTTCTAGACCTTCAAAAAATAGGATTGACTTGACATGACGATTGAGTTACTGGATCGATGTAACAAATTAGGGCATGTTGCATATGGAACATTAGATGGAAATTCAAAGTTCTATACATGATGGTCAGGGACTACATCATTTACTATATGGGTTCTTCTACATGATATGCGTTGTCATTTATGTCTTCACCATTAACATTTGCGACTACTTCCTCTCCATCATCACCTGTTTCCCTCTAGGACCAATCGTTAAAATCTTGAGTTTGAGATACATGGTCCACATCATCCCTCAAATTATTCGTCGTCACCATTAACATTTGCGACTACTTCCTCTCCATCATCACCTGTTTCCCTCTAGGACCAATCGTTAAAATCTTGAGTTTGAGATACATGGTCCACATCATCCCTCAAATTATTCGTCG ATGCCCTTTATCATGGCTTCGAAGCGTATCTTGAAGGAACTTAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGATATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCTAAGGTACTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCATATGTACAAGACCGACCGAACCAAGTATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCTATGGGTTGA MPFIMASKRILKELKDLQKDPPTSCSAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEASARSWTQKYAMG
BLAST of Lsi01G016270 vs. Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 7.8e-64 Identity = 121/148 (81.76%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 7.8e-64 Identity = 121/148 (81.76%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. Swiss-Prot
Match: UBC28_ARATH (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.0e-63 Identity = 120/148 (81.08%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 1.7e-63 Identity = 120/148 (81.08%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 3.9e-63 Identity = 119/148 (80.41%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. TrEMBL
Match: A0A077S4E7_WHEAT (Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF006600070CFD_c1 PE=3 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 5.5e-64 Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 1
BLAST of Lsi01G016270 vs. TrEMBL
Match: A0A0E0JQC5_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.2e-63 Identity = 120/130 (92.31%), Postives = 123/130 (94.62%), Query Frame = 1
BLAST of Lsi01G016270 vs. TrEMBL
Match: A0A0A0L2X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334720 PE=3 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 3.5e-63 Identity = 124/148 (83.78%), Postives = 124/148 (83.78%), Query Frame = 1
BLAST of Lsi01G016270 vs. TrEMBL
Match: A0A0A0KKF5_CUCSA (Ubiquitin carrier protein OS=Cucumis sativus GN=Csa_5G151540 PE=3 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 6.0e-63 Identity = 123/148 (83.11%), Postives = 125/148 (84.46%), Query Frame = 1
BLAST of Lsi01G016270 vs. TrEMBL
Match: A0A0A0KEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133760 PE=3 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 7.9e-63 Identity = 123/148 (83.11%), Postives = 125/148 (84.46%), Query Frame = 1
BLAST of Lsi01G016270 vs. TAIR10
Match: AT5G53300.1 (AT5G53300.1 ubiquitin-conjugating enzyme 10) HSP 1 Score: 243.0 bits (619), Expect = 9.8e-65 Identity = 120/148 (81.08%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. TAIR10
Match: AT4G27960.2 (AT4G27960.2 ubiquitin conjugating enzyme 9) HSP 1 Score: 241.9 bits (616), Expect = 2.2e-64 Identity = 119/148 (80.41%), Postives = 123/148 (83.11%), Query Frame = 1
BLAST of Lsi01G016270 vs. TAIR10
Match: AT5G41700.4 (AT5G41700.4 ubiquitin conjugating enzyme 8) HSP 1 Score: 240.4 bits (612), Expect = 6.4e-64 Identity = 119/149 (79.87%), Postives = 122/149 (81.88%), Query Frame = 1
BLAST of Lsi01G016270 vs. TAIR10
Match: AT3G08690.1 (AT3G08690.1 ubiquitin-conjugating enzyme 11) HSP 1 Score: 238.8 bits (608), Expect = 1.9e-63 Identity = 116/148 (78.38%), Postives = 125/148 (84.46%), Query Frame = 1
BLAST of Lsi01G016270 vs. TAIR10
Match: AT5G56150.1 (AT5G56150.1 ubiquitin-conjugating enzyme 30) HSP 1 Score: 232.6 bits (592), Expect = 1.3e-61 Identity = 113/148 (76.35%), Postives = 121/148 (81.76%), Query Frame = 1
BLAST of Lsi01G016270 vs. NCBI nr
Match: gi|669030285|emb|CDM84761.1| (unnamed protein product [Triticum aestivum]) HSP 1 Score: 251.5 bits (641), Expect = 7.8e-64 Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 1
BLAST of Lsi01G016270 vs. NCBI nr
Match: gi|974994276|pdb|4X57|A (Chain A, Structure Of An Arabidopsis E2 / Membrane-anchored Ubiquitin-fold Protein Complex) HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63 Identity = 123/151 (81.46%), Postives = 125/151 (82.78%), Query Frame = 1
BLAST of Lsi01G016270 vs. NCBI nr
Match: gi|449449847|ref|XP_004142676.1| (PREDICTED: ubiquitin-conjugating enzyme E2 28 [Cucumis sativus]) HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63 Identity = 124/148 (83.78%), Postives = 124/148 (83.78%), Query Frame = 1
BLAST of Lsi01G016270 vs. NCBI nr
Match: gi|778699419|ref|XP_011654707.1| (PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Cucumis sativus]) HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63 Identity = 123/148 (83.11%), Postives = 125/148 (84.46%), Query Frame = 1
BLAST of Lsi01G016270 vs. NCBI nr
Match: gi|659074001|ref|XP_008437368.1| (PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Cucumis melo]) HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63 Identity = 123/148 (83.11%), Postives = 125/148 (84.46%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |