Lsi01G014500 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G014500
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Regulator of chromosome condensation (RCC1) family protein
Location	chr01 : 12644066 .. 12644489 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGAATTTCCATATGCAGAAGCATCGGAAACAGAGAGAGAAAGATGAAGTAAAGCTTCCATTTTATGTAACAACATACTTTTTTGTTTTTCTGATTAAATTAAGAATTTCTTTGCGTTGTTATTTATCGTCTTCTAATGGATTAGGGAGGAGAATGCAGGAGATCAGAACGGTGCAAAAATGGCGAACAAAATCGATGCTCTCGTTTATATGTGGGGTTATCTTCCTGGAGCCTTGCCGGATAAATCCCTTTTGCTCTCGCCGGAGCCGGTACGCCTTCCGGGTTCGATCGACGGTGGGGATTCGTGGAAGGAGGTCTGTGGCGGCGGTTGTGGATTCGCTATGGCCATTTCAGGTCTTAAAGCTCTCGATCTTTGGAATCTTGTTTGTTCTTTTGTTGTTTTCTTGAATTTTGGTCGATGA

mRNA sequence

GGTTGAATTTCCATATGCAGAAGCATCGGAAACAGAGAGAGAAAGATGAAGGAGGAGAATGCAGGAGATCAGAACGGTGCAAAAATGGCGAACAAAATCGATGCTCTCGTTTATATGTGGGGTTATCTTCCTGGAGCCTTGCCGGATAAATCCCTTTTGCTCTCGCCGGAGCCGGTACGCCTTCCGGGTTCGATCGACGGTGGGGATTCGTGGAAGGAGGTCTGTGGCGGCGGTTGTGGATTCGCTATGGCCATTTCAGGTCTTAAAGCTCTCGATCTTTGGAATCTTGTTTGTTCTTTTGTTGTTTTCTTGAATTTTGGTCGATGA

Coding sequence (CDS)

ATGAAGGAGGAGAATGCAGGAGATCAGAACGGTGCAAAAATGGCGAACAAAATCGATGCTCTCGTTTATATGTGGGGTTATCTTCCTGGAGCCTTGCCGGATAAATCCCTTTTGCTCTCGCCGGAGCCGGTACGCCTTCCGGGTTCGATCGACGGTGGGGATTCGTGGAAGGAGGTCTGTGGCGGCGGTTGTGGATTCGCTATGGCCATTTCAGGTCTTAAAGCTCTCGATCTTTGGAATCTTGTTTGTTCTTTTGTTGTTTTCTTGAATTTTGGTCGATGA

Protein sequence

MKEENAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDLWNLVCSFVVFLNFGR

Homology

[Close]

BLAST of Lsi01G014500 vs. TrEMBL
Match: W9QNB4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016988 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-17
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 5  NAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGC 64
          N  +    K+    +A+VYMWGYLPGA P+KS +LSP PVR    I G DSW++VCGGGC
Sbjct: 2  NGNEGGEVKIEECKEAMVYMWGYLPGASPEKSPILSPTPVRFSDGIGGEDSWRDVCGGGC 61

Query: 65 GFAMAISGLKALDLWNLV 83
          GFAMAISG   L  W  V
Sbjct: 62 GFAMAISGSGKLITWGSV 79

[Close]

BLAST of Lsi01G014500 vs. TrEMBL
Match: R0H3D3_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10016999mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 21  LVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDLW 80
           LVYM GYLPGA P+KS +LSP PVRLP ++ GGDSWK+VCGGGCGFAMAIS    L  W
Sbjct: 78  LVYMSGYLPGAAPEKSPILSPVPVRLPAAVHGGDSWKDVCGGGCGFAMAISEKGKLITW 136

[Close]

BLAST of Lsi01G014500 vs. TrEMBL
Match: R0HFC2_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10016999mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 21  LVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDLW 80
           LVYM GYLPGA P+KS +LSP PVRLP ++ GGDSWK+VCGGGCGFAMAIS    L  W
Sbjct: 78  LVYMSGYLPGAAPEKSPILSPVPVRLPAAVHGGDSWKDVCGGGCGFAMAISEKGKLITW 136

[Close]

BLAST of Lsi01G014500 vs. TrEMBL
Match: A0A068TXR6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029947001 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.2e-16
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 19 DALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDL 78
          + LVYMWGYLPGALP +S LLSP  VRLP SI  G SWK+VCGGGCGFAMAIS    L  
Sbjct: 23 ERLVYMWGYLPGALPQRSPLLSPVVVRLPQSIGAGTSWKDVCGGGCGFAMAISESGKLIT 82

Query: 79 W 80
          W
Sbjct: 83 W 83

[Close]

BLAST of Lsi01G014500 vs. TrEMBL
Match: D7LUM8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485777 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-16
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 21 LVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDLW 80
          +VYM GYLPGA P+KS +LSP PVRLP ++ GGDSWK+VCGGGCGFAMAIS    L  W
Sbjct: 18 VVYMSGYLPGAAPEKSPILSPVPVRLPAAVHGGDSWKDVCGGGCGFAMAISEKGKLITW 76

[Close]

BLAST of Lsi01G014500 vs. TAIR10
Match: AT3G53830.1 (AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-17
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 21 LVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDLW 80
          +VYM GYLPGA  +KS +LSP PVRL  ++ GGDSWK+VCGGGCGFAMAIS    L  W
Sbjct: 18 VVYMSGYLPGAASEKSPILSPVPVRLSAAVHGGDSWKDVCGGGCGFAMAISEKGKLITW 76

[Close]

BLAST of Lsi01G014500 vs. TAIR10
Match: AT3G55580.1 (AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 21 LVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGGGCGFAMAISGLKALDLW 80
          +VYMWGYLPGA P +S L+SP  V++P +++   SWK+V GGGCGFAMA +    L  W
Sbjct: 32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVE--SSWKDVSGGGCGFAMATAESGKLITW 88

[Close]

BLAST of Lsi01G014500 vs. NCBI nr
Match: gi|659069112|ref|XP_008448203.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 71/79 (89.87%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1  MKEENAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVC 60
          MKEENA DQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGS DGGDSWKEVC
Sbjct: 1  MKEENAADQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSTDGGDSWKEVC 60

Query: 61 GGGCGFAMAISGLKALDLW 80
          GGGCGFAMAIS    L  W
Sbjct: 61 GGGCGFAMAISDSGKLITW 79

[Close]

BLAST of Lsi01G014500 vs. NCBI nr
Match: gi|659069110|ref|XP_008448195.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 69/77 (89.61%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 3  EENAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVCGG 62
          EENA DQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGS DGGDSWKEVCGG
Sbjct: 20 EENAADQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSTDGGDSWKEVCGG 79

Query: 63 GCGFAMAISGLKALDLW 80
          GCGFAMAIS    L  W
Sbjct: 80 GCGFAMAISDSGKLITW 96

[Close]

BLAST of Lsi01G014500 vs. NCBI nr
Match: gi|449448608|ref|XP_004142058.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X5 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 69/79 (87.34%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MKEENAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVC 60
          MKEENA D NGAKMANKIDALVYMWGYLPGALPDKSLLL PEPVRLP SIDGGDSWKEVC
Sbjct: 1  MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 61 GGGCGFAMAISGLKALDLW 80
          GGGCGFAMAIS    L  W
Sbjct: 61 GGGCGFAMAISDSGKLITW 79

[Close]

BLAST of Lsi01G014500 vs. NCBI nr
Match: gi|778693505|ref|XP_011653649.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 69/79 (87.34%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MKEENAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVC 60
          MKEENA D NGAKMANKIDALVYMWGYLPGALPDKSLLL PEPVRLP SIDGGDSWKEVC
Sbjct: 1  MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 61 GGGCGFAMAISGLKALDLW 80
          GGGCGFAMAIS    L  W
Sbjct: 61 GGGCGFAMAISDSGKLITW 79

[Close]

BLAST of Lsi01G014500 vs. NCBI nr
Match: gi|778693509|ref|XP_011653650.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X4 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 69/79 (87.34%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MKEENAGDQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDSWKEVC 60
          MKEENA D NGAKMANKIDALVYMWGYLPGALPDKSLLL PEPVRLP SIDGGDSWKEVC
Sbjct: 1  MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 61 GGGCGFAMAISGLKALDLW 80
          GGGCGFAMAIS    L  W
Sbjct: 61 GGGCGFAMAISDSGKLITW 79

The following BLAST results are available for this feature:

BLAST of Lsi01G014500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G014500 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QNB4_9ROSA	3.6e-17	56.41	Uncharacterized protein OS=Morus notabilis GN=L484_016988 PE=4 SV=1	[more]
R0H3D3_9BRAS	3.1e-16	71.19	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10016999mg PE=4...	[more]
R0HFC2_9BRAS	3.1e-16	71.19	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10016999mg PE=4...	[more]
A0A068TXR6_COFCA	5.2e-16	70.49	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029947001 PE=4 SV=1	[more]
D7LUM8_ARALL	6.8e-16	69.49	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Lsi01G014500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53830.1	2.5e-17	66.10	Regulator of chromosome condensation (RCC1) family protein	[more]
AT3G55580.1	2.8e-13	54.24	Regulator of chromosome condensation (RCC1) family protein	[more]

BLAST of Lsi01G014500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069112\|ref\|XP_008448203.1\|	1.4e-33	89.87	PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Cucumis melo]	[more]
gi\|659069110\|ref\|XP_008448195.1\|	2.0e-32	89.61	PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cucumis melo]	[more]
gi\|449448608\|ref\|XP_004142058.1\|	3.3e-32	87.34	PREDICTED: ultraviolet-B receptor UVR8-like isoform X5 [Cucumis sativus]	[more]
gi\|778693505\|ref\|XP_011653649.1\|	3.3e-32	87.34	PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Cucumis sativus]	[more]
gi\|778693509\|ref\|XP_011653650.1\|	3.3e-32	87.34	PREDICTED: ultraviolet-B receptor UVR8-like isoform X4 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G014500.1	Lsi01G014500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 21..71 score: 2.9
None	No IPR available	PANTHER	PTHR22870:SF172	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN	coord: 21..71 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G014500	Csa4G296280	Cucumber (Chinese Long) v2	culsiB248
Lsi01G014500	CSPI04G14900	Wild cucumber (PI 183967)	cpilsiB247
Lsi01G014500	CmaCh04G011640	Cucurbita maxima (Rimu)	cmalsiB642
Lsi01G014500	CmaCh03G004130	Cucurbita maxima (Rimu)	cmalsiB601
Lsi01G014500	CmoCh03G004230	Cucurbita moschata (Rifu)	cmolsiB587
Lsi01G014500	Cla018187	Watermelon (97103) v1	lsiwmB152
Lsi01G014500	MELO3C003150	Melon (DHL92) v3.5.1	lsimeB151
Lsi01G014500	MELO3C003150.2	Melon (DHL92) v3.6.1	lsimedB158
Lsi01G014500	MELO3C023889.2	Melon (DHL92) v3.6.1	lsimedB129
Lsi01G014500	Cla97C07G131930	Watermelon (97103) v2	lsiwmbB146
Lsi01G014500	Cla97C04G074600	Watermelon (97103) v2	lsiwmbB140
Lsi01G014500	Bhi03G001588	Wax gourd	lsiwgoB169
Lsi01G014500	Cp4.1LG10g08490	Cucurbita pepo (Zucchini)	cpelsiB048
Lsi01G014500	CsGy5G007310	Cucumber (Gy14) v2	cgyblsiB314
Lsi01G014500	CsGy4G014370	Cucumber (Gy14) v2	cgyblsiB236
Lsi01G014500	Carg13824	Silver-seed gourd	carlsiB844
Lsi01G014500	CsaV3_4G025250	Cucumber (Chinese Long) v3	cuclsiB272
Lsi01G014500	CsaV3_5G008410	Cucumber (Chinese Long) v3	cuclsiB365

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi01G014500	Lsi04G009110	Bottle gourd (USVL1VR-Ls)	lsilsiB077

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G014500	Cucumber (Gy14) v1	cgylsiB059
Lsi01G014500	Cucurbita maxima (Rimu)	cmalsiB644
Lsi01G014500	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G014500	Cucurbita moschata (Rifu)	cmolsiB630
Lsi01G014500	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G014500	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G014500	Wild cucumber (PI 183967)	cpilsiB255
Lsi01G014500	Wild cucumber (PI 183967)	cpilsiB345
Lsi01G014500	Cucumber (Chinese Long) v2	culsiB341
Lsi01G014500	Watermelon (Charleston Gray)	lsiwcgB142
Lsi01G014500	Watermelon (Charleston Gray)	lsiwcgB148
Lsi01G014500	Silver-seed gourd	carlsiB526