CmaCh03G004130 (gene) Cucurbita maxima (Rimu)

NameCmaCh03G004130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRegulator of chromosome condensation (RCC1) family protein
LocationCma_Chr03 : 4466047 .. 4466622 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTTTTTTGGCTGAATTTTCATGTGCAGAGGCATCGGAATGCAAAGAGAGAAAGATGAAGTAAAGCTTTCCGTTTCTTCTTCTACAAAATAGTTTTTGTTTTCTGAATAAAATTAGAATTTCTCTGAGTTGTTATTTATCGGTTTCGAATGGATTAGGGAGGAGAATGCAGCAGGACAGAACTGTGCAAAAATGGCGAACAAAATCGATGCCCTTGTTTTTATGTGGGGTTATCTTCCCGGAGCTTTGCCGGATAAATCCCTTTTGCTCTCGCCGGAGCCTGTGCGGCTTCCGGGTTCGATCGACGGCGGGGATTTGTGGAAGGAAGTCTGTGGCGGTGGTTGTGGGTTTGCTATGGCCATTTCAGGTTTTAAAGCTCTCGATCCTTGGAATCTTGTTCTTTTTGTTTTCTGGAATTCTGGTTTTCTTTTTTTCCTTTGAATTTTGGTCGATGAACTGTTCATGGATTTGGGTTTTAGATTCTGGAAAGTTAATTACGTGGGGTGCGGCGGATGAGGAAAGTCAAATTTACCTGACTTCGGGAAAACATGGGGTAATGTGGATGTTTGAGTGA

mRNA sequence

TCTTCTTTTTTGGCTGAATTTTCATGTGCAGAGGCATCGGAATGCAAAGAGAGAAAGATGAAGGAGGAGAATGCAGCAGGACAGAACTGTGCAAAAATGGCGAACAAAATCGATGCCCTTGTTTTTATGTGGGGTTATCTTCCCGGAGCTTTGCCGGATAAATCCCTTTTGCTCTCGCCGGAGCCTGTGCGGCTTCCGGGTTCGATCGACGGCGGGGATTTGTGGAAGGAAGTCTGTGGCGGTGGTTGTGGGTTTGCTATGGCCATTTCAGATTCTGGAAAGTTAATTACGTGGGGTGCGGCGGATGAGGAAAGTCAAATTTACCTGACTTCGGGAAAACATGGGGTAATGTGGATGTTTGAGTGA

Coding sequence (CDS)

ATGAAGGAGGAGAATGCAGCAGGACAGAACTGTGCAAAAATGGCGAACAAAATCGATGCCCTTGTTTTTATGTGGGGTTATCTTCCCGGAGCTTTGCCGGATAAATCCCTTTTGCTCTCGCCGGAGCCTGTGCGGCTTCCGGGTTCGATCGACGGCGGGGATTTGTGGAAGGAAGTCTGTGGCGGTGGTTGTGGGTTTGCTATGGCCATTTCAGATTCTGGAAAGTTAATTACGTGGGGTGCGGCGGATGAGGAAAGTCAAATTTACCTGACTTCGGGAAAACATGGGGTAATGTGGATGTTTGAGTGA

Protein sequence

MKEENAAGQNCAKMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISDSGKLITWGAADEESQIYLTSGKHGVMWMFE
BLAST of CmaCh03G004130 vs. TrEMBL
Match: A0A068TXR6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029947001 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-27
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 19  DALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISDSGKLIT 78
           + LV+MWGYLPGALP +S LLSP  VRLP SI  G  WK+VCGGGCGFAMAIS+SGKLIT
Sbjct: 23  ERLVYMWGYLPGALPQRSPLLSPVVVRLPQSIGAGTSWKDVCGGGCGFAMAISESGKLIT 82

Query: 79  WGAADEESQIYLTSGKHGVM 99
           WG+AD+  Q Y+TSGKHG M
Sbjct: 83  WGSADDLGQSYVTSGKHGEM 102

BLAST of CmaCh03G004130 vs. TrEMBL
Match: A0A103YIV0_CYNCS (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II OS=Cynara cardunculus var. scolymus GN=Ccrd_011748 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-27
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1

Query: 5  NAAGQNCAKMANKIDAL-VFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGG 64
          N  G    KM  K +   V+MWGYLPGALP +S +LSP  VRLP SID G LW +VCGGG
Sbjct: 2  NGEGDEDMKMEMKCEEKSVYMWGYLPGALPQRSPILSPVEVRLPQSIDAGRLWADVCGGG 61

Query: 65 CGFAMAISDSGKLITWGAADEESQIYLTSGKHG 97
          CGFAMAISD+GKLITWG+ D+  Q Y+TSGKHG
Sbjct: 62 CGFAMAISDTGKLITWGSTDDLGQSYVTSGKHG 94

BLAST of CmaCh03G004130 vs. TrEMBL
Match: R0H3D3_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10016999mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-26
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1

Query: 21  LVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISDSGKLITWG 80
           LV+M GYLPGA P+KS +LSP PVRLP ++ GGD WK+VCGGGCGFAMAIS+ GKLITWG
Sbjct: 78  LVYMSGYLPGAAPEKSPILSPVPVRLPAAVHGGDSWKDVCGGGCGFAMAISEKGKLITWG 137

Query: 81  AADEESQIYLTSGKHG 97
           + D+E Q Y+ SGKHG
Sbjct: 138 STDDEGQSYVASGKHG 153

BLAST of CmaCh03G004130 vs. TrEMBL
Match: M5W4I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005731mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-26
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1

Query: 13 KMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISD 72
          K   + +ALV+M GYLPG  P+KS +LS  PVR P  +DGGD WK+VCGGGCGFAMAIS+
Sbjct: 2  KTEERREALVYMCGYLPGVSPEKSPVLSLAPVRFPNRMDGGDSWKDVCGGGCGFAMAISE 61

Query: 73 SGKLITWGAADEESQIYLTSGKHG 97
           GKLITWG+AD+E Q YL SGKHG
Sbjct: 62 CGKLITWGSADDEGQSYLVSGKHG 85

BLAST of CmaCh03G004130 vs. TrEMBL
Match: V4L456_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010341mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-26
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1

Query: 20 ALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISDSGKLITW 79
          ++V+M GYLPGA P+KS +LSP PVRLP +  GGD WK+VCGGGCGFAMAISD+GKLITW
Sbjct: 16 SVVYMSGYLPGAAPEKSPILSPVPVRLPEAFHGGDSWKDVCGGGCGFAMAISDNGKLITW 75

Query: 80 GAADEESQIYLTSGKHG 97
          G++D+E Q Y+ SGKHG
Sbjct: 76 GSSDDEGQCYVASGKHG 92

BLAST of CmaCh03G004130 vs. TAIR10
Match: AT3G53830.1 (AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.9e-27
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1

Query: 21 LVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISDSGKLITWG 80
          +V+M GYLPGA  +KS +LSP PVRL  ++ GGD WK+VCGGGCGFAMAIS+ GKLITWG
Sbjct: 18 VVYMSGYLPGAASEKSPILSPVPVRLSAAVHGGDSWKDVCGGGCGFAMAISEKGKLITWG 77

Query: 81 AADEESQIYLTSGKHG 97
          + D+E Q Y+ SGKHG
Sbjct: 78 STDDEGQSYVASGKHG 93

BLAST of CmaCh03G004130 vs. TAIR10
Match: AT3G55580.1 (AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-23
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 1

Query: 21  LVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGGGCGFAMAISDSGKLITWG 80
           +V+MWGYLPGA P +S L+SP  V++P +++    WK+V GGGCGFAMA ++SGKLITWG
Sbjct: 32  VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESS--WKDVSGGGCGFAMATAESGKLITWG 91

Query: 81  AADEESQIYLTSGKHG 97
           + D+  Q Y+TSGKHG
Sbjct: 92  STDDLGQSYVTSGKHG 105

BLAST of CmaCh03G004130 vs. NCBI nr
Match: gi|659069112|ref|XP_008448203.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 7.6e-46
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 1

Query: 1  MKEENAAGQNCAKMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVC 60
          MKEENAA QN AKMANKIDALV+MWGYLPGALPDKSLLLSPEPVRLPGS DGGD WKEVC
Sbjct: 1  MKEENAADQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSTDGGDSWKEVC 60

Query: 61 GGGCGFAMAISDSGKLITWGAADEESQIYLTSGKHG 97
          GGGCGFAMAISDSGKLITWGAADEE QIYLTSGKHG
Sbjct: 61 GGGCGFAMAISDSGKLITWGAADEEGQIYLTSGKHG 96

BLAST of CmaCh03G004130 vs. NCBI nr
Match: gi|659069110|ref|XP_008448195.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 1

Query: 3   EENAAGQNCAKMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVCGG 62
           EENAA QN AKMANKIDALV+MWGYLPGALPDKSLLLSPEPVRLPGS DGGD WKEVCGG
Sbjct: 20  EENAADQNGAKMANKIDALVYMWGYLPGALPDKSLLLSPEPVRLPGSTDGGDSWKEVCGG 79

Query: 63  GCGFAMAISDSGKLITWGAADEESQIYLTSGKHG 97
           GCGFAMAISDSGKLITWGAADEE QIYLTSGKHG
Sbjct: 80  GCGFAMAISDSGKLITWGAADEEGQIYLTSGKHG 113

BLAST of CmaCh03G004130 vs. NCBI nr
Match: gi|449448608|ref|XP_004142058.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X5 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-44
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1

Query: 1  MKEENAAGQNCAKMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVC 60
          MKEENAA  N AKMANKIDALV+MWGYLPGALPDKSLLL PEPVRLP SIDGGD WKEVC
Sbjct: 1  MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 61 GGGCGFAMAISDSGKLITWGAADEESQIYLTSGKHG 97
          GGGCGFAMAISDSGKLITWGAADEE QI+LTSGKHG
Sbjct: 61 GGGCGFAMAISDSGKLITWGAADEEGQIFLTSGKHG 96

BLAST of CmaCh03G004130 vs. NCBI nr
Match: gi|778693505|ref|XP_011653649.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-44
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1

Query: 1  MKEENAAGQNCAKMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVC 60
          MKEENAA  N AKMANKIDALV+MWGYLPGALPDKSLLL PEPVRLP SIDGGD WKEVC
Sbjct: 1  MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 61 GGGCGFAMAISDSGKLITWGAADEESQIYLTSGKHG 97
          GGGCGFAMAISDSGKLITWGAADEE QI+LTSGKHG
Sbjct: 61 GGGCGFAMAISDSGKLITWGAADEEGQIFLTSGKHG 96

BLAST of CmaCh03G004130 vs. NCBI nr
Match: gi|778693509|ref|XP_011653650.1| (PREDICTED: ultraviolet-B receptor UVR8-like isoform X4 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-44
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1

Query: 1  MKEENAAGQNCAKMANKIDALVFMWGYLPGALPDKSLLLSPEPVRLPGSIDGGDLWKEVC 60
          MKEENAA  N AKMANKIDALV+MWGYLPGALPDKSLLL PEPVRLP SIDGGD WKEVC
Sbjct: 1  MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 61 GGGCGFAMAISDSGKLITWGAADEESQIYLTSGKHG 97
          GGGCGFAMAISDSGKLITWGAADEE QI+LTSGKHG
Sbjct: 61 GGGCGFAMAISDSGKLITWGAADEEGQIFLTSGKHG 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A068TXR6_COFCA7.2e-2772.50Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029947001 PE=4 SV=1[more]
A0A103YIV0_CYNCS9.4e-2764.52Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II OS=Cy... [more]
R0H3D3_9BRAS3.6e-2671.05Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10016999mg PE=4... [more]
M5W4I0_PRUPE3.6e-2666.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005731mg PE=4 SV=1[more]
V4L456_EUTSA3.6e-2670.13Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010341mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G53830.12.9e-2767.11 Regulator of chromosome condensation (RCC1) family protein[more]
AT3G55580.12.5e-2359.21 Regulator of chromosome condensation (RCC1) family protein[more]
Match NameE-valueIdentityDescription
gi|659069112|ref|XP_008448203.1|7.6e-4693.75PREDICTED: ultraviolet-B receptor UVR8-like isoform X2 [Cucumis melo][more]
gi|659069110|ref|XP_008448195.1|1.1e-4493.62PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cucumis melo][more]
gi|449448608|ref|XP_004142058.1|5.4e-4490.63PREDICTED: ultraviolet-B receptor UVR8-like isoform X5 [Cucumis sativus][more]
gi|778693505|ref|XP_011653649.1|5.4e-4490.63PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Cucumis sativus][more]
gi|778693509|ref|XP_011653650.1|5.4e-4490.63PREDICTED: ultraviolet-B receptor UVR8-like isoform X4 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G004130.1CmaCh03G004130.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 14..96
score: 1.8
NoneNo IPR availablePANTHERPTHR22870:SF204REGULATOR OF CHROMOSOME CONDENSATION REPEAT-CONTAINING PROTEINcoord: 14..96
score: 1.8

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G004130Lsi01G014500Bottle gourd (USVL1VR-Ls)cmalsiB601
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh03G004130CmaCh07G010080Cucurbita maxima (Rimu)cmacmaB529
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G004130Cucumber (Gy14) v2cgybcmaB404
CmaCh03G004130Cucumber (Gy14) v2cgybcmaB533
CmaCh03G004130Cucumber (Gy14) v2cgybcmaB645
CmaCh03G004130Cucumber (Gy14) v2cgybcmaB832
CmaCh03G004130Melon (DHL92) v3.6.1cmamedB671
CmaCh03G004130Melon (DHL92) v3.6.1cmamedB687
CmaCh03G004130Melon (DHL92) v3.6.1cmamedB705
CmaCh03G004130Silver-seed gourdcarcmaB0031
CmaCh03G004130Silver-seed gourdcarcmaB0114
CmaCh03G004130Silver-seed gourdcarcmaB0815
CmaCh03G004130Silver-seed gourdcarcmaB1276
CmaCh03G004130Silver-seed gourdcarcmaB1384
CmaCh03G004130Cucumber (Chinese Long) v3cmacucB0785
CmaCh03G004130Cucumber (Chinese Long) v3cmacucB0797
CmaCh03G004130Cucumber (Chinese Long) v3cmacucB0805
CmaCh03G004130Wax gourdcmawgoB0799
CmaCh03G004130Watermelon (97103) v2cmawmbB675
CmaCh03G004130Watermelon (97103) v2cmawmbB676
CmaCh03G004130Watermelon (97103) v2cmawmbB684
CmaCh03G004130Watermelon (97103) v2cmawmbB697
CmaCh03G004130Wax gourdcmawgoB0779
CmaCh03G004130Cucurbita maxima (Rimu)cmacmaB268
CmaCh03G004130Cucurbita maxima (Rimu)cmacmaB514
CmaCh03G004130Cucurbita maxima (Rimu)cmacmaB515
CmaCh03G004130Cucurbita maxima (Rimu)cmacmaB516
CmaCh03G004130Cucurbita maxima (Rimu)cmacmaB520
CmaCh03G004130Cucumber (Gy14) v1cgycmaB0105
CmaCh03G004130Cucumber (Gy14) v1cgycmaB0373
CmaCh03G004130Cucumber (Gy14) v1cgycmaB0470
CmaCh03G004130Cucumber (Gy14) v1cgycmaB0503
CmaCh03G004130Cucurbita moschata (Rifu)cmacmoB639
CmaCh03G004130Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G004130Cucurbita moschata (Rifu)cmacmoB659
CmaCh03G004130Cucurbita moschata (Rifu)cmacmoB664
CmaCh03G004130Cucurbita moschata (Rifu)cmacmoB673
CmaCh03G004130Wild cucumber (PI 183967)cmacpiB665
CmaCh03G004130Wild cucumber (PI 183967)cmacpiB685
CmaCh03G004130Wild cucumber (PI 183967)cmacpiB677
CmaCh03G004130Wild cucumber (PI 183967)cmacpiB690
CmaCh03G004130Cucumber (Chinese Long) v2cmacuB657
CmaCh03G004130Cucumber (Chinese Long) v2cmacuB668
CmaCh03G004130Cucumber (Chinese Long) v2cmacuB677
CmaCh03G004130Cucumber (Chinese Long) v2cmacuB682
CmaCh03G004130Melon (DHL92) v3.5.1cmameB588
CmaCh03G004130Melon (DHL92) v3.5.1cmameB604
CmaCh03G004130Melon (DHL92) v3.5.1cmameB619
CmaCh03G004130Watermelon (Charleston Gray)cmawcgB575
CmaCh03G004130Watermelon (Charleston Gray)cmawcgB574
CmaCh03G004130Watermelon (Charleston Gray)cmawcgB585
CmaCh03G004130Watermelon (Charleston Gray)cmawcgB600
CmaCh03G004130Watermelon (97103) v1cmawmB615
CmaCh03G004130Watermelon (97103) v1cmawmB624
CmaCh03G004130Watermelon (97103) v1cmawmB633
CmaCh03G004130Watermelon (97103) v1cmawmB648
CmaCh03G004130Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G004130Cucurbita pepo (Zucchini)cmacpeB664
CmaCh03G004130Cucurbita pepo (Zucchini)cmacpeB668
CmaCh03G004130Cucurbita pepo (Zucchini)cmacpeB680
CmaCh03G004130Bottle gourd (USVL1VR-Ls)cmalsiB610
CmaCh03G004130Bottle gourd (USVL1VR-Ls)cmalsiB612
CmaCh03G004130Bottle gourd (USVL1VR-Ls)cmalsiB616