Lsi01G013220 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G013220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 11468738 .. 11474371 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGCATTCATGGTTTGTAAAAGGTGTTATGTTGCAATCTATGAAGAAAAGAAATTGAGATGATTTTGGTTTCTCTCGCTGAAAATTTATGCATTCTCATTATGCAAGAGACTATCTGTTGTACTTCTAAAGATTATGATGGTAGATTGAAACGACTATAATTGTAGTTGACTTATTAATTGTCTGCAAATACGACGATTGGACTTGTGTTTATTATTGCCCACTAACGTTTGGGAAAGATATATGAAGCCTTAAAATTGGAGTGGTTTTAGCTTGACTGAAAGCCATGGATTTTTCCTGAAAATTTAAGGTTCATAGTCAAGTCATTTGAGAGCATGAATCTTTTCTTTCTTTGTTCCGTAACTTTTGTATACTTATGCAATGTCCAAAAACTTGGCTGTTTCTTTATTTGAGAGAATGTACTGGGGTGTCAATCACTGTTGCAGATTTTGTGTGTGGAGTTGGTTATCTGGCATCAAAGTAATTGCAATTTATCTGACTTTTAGAATCCTGTGCGAAACTGGAGTTTAGTTGCTGTGGTTCGAGCTATGCAGAGATGTTCTATATCTTTAAATAGGCAATTGGGCCTAACAATGAGTGGCCATTGGTCAAAGGGAGAGTCGAAAATTTTGCCTGGAGTTGAAATGTTGCAACCGTTATGGCCATTTCAAATCACATTTGTCATTTGTTCTTGAAGATCAGCAACTAGATTATTTCTGGAGCTGTTTTCCTTTACTTAACCTGAAATATTTGAAACAAATCAAGGCCTATTATCCTGCCACTGTTTTCAAATACAGTCTTTACCTAGCTTACTGATGTAGGCATTAACGATCACAAGTGGTGTTGCTTGTTATAAATGACTCACTCGACACTTTATGAATGATTTCCTTGGAATTTTTACATTTCACCCATTTATGGGAGTTTCTTCCCCTTTTTTGAGACAGAACATTTATGGGAAGCGTTTTTCTTTTTTATAAGAATAAGACAACAAAACATTTACCATGTATTTCTATTTGCATCTTATGAGAAATGAAACCGAAAGTTTCCATAAACTAGTTTTAAATTCAAGTTGGTCATTTTACGTTTATTAGTTCGGATTCTGCACATTTAGGATAACGCAATTACTTTGCCAAATTTGGGTTGGTCCATTTAAGTCTATCAAAATTGGTGTCTCAATCAACTATGCATCAGAAGCTCATGAAAGATCATGAGGCCCACGGAGGGAGAGAAAACCTTGAGACTTAATCTTCCTAAGAAACAAACCTTGAGACTTTATCTGCACGTATCAGTTCAATAGAATCTGGTTTTCTCTTGCAAAGAAATTGACAATCTTTACAGTTAACTTGTTTTGGGGGGGTTGAGCTGATTCCTAGCCATATCCATTATCTAGAGTCCCAAATTTCTATTTAATTCAATTCAATTTGTCGTAAGAAAATCAATAGTCAAGGTAGTAAGTTTGAGGTTTGAGATTTTAGATTGAGTTGTATGGACTTAAAATGGATATGCACATATATATTATTAGATCATGTCTGGTGGGAAGCAGTAAAAATTGTCATTTTGAACTTGCTTATCGAGAATTGAGTTCATAGCTCTGAGAGCTTGTCAAGTGCAAATATGGACAGATTCATAGATCTAGGGAGAGTGAATGGTGTTCCCCATTTTCTTTCTGTGATCAAAGACGATGGTTTGATCTCATAAGAATTAGATATGGAGATGACGCAGATAGCCTGCAAGCTTTATAATTCTGTAAAACAACATTTGCAGGATTCTTCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTACTACTACTAGTACTTGCAGAAAATGTTACAGATGAGGCTGATTAAGTGAAAGTTGTGAGAGAAGGATGCAAAATAGGCTGGAATAGATCCATTTGATTGCCGGGTTGAACAAATCAGTGGAAATTTTTGTGAGTGACTTGTTGAATAAGTTGAAGCATATGCAATATTTGGTGGTAACTGATTTGTTGTTGCTGTGAAGGACTTTCAGCAACTTGCTGCTAAAAGCACCATTTTCTTATAAAGTGGCATTAGGTCCCCAAGTGGTAACACTAACTTTTAATCAAGTTACATTAGTATACAACAAATCGTGGCTAAATACATATCAGCATTCTCAAAGAGGATTTAGATCTTCAGAATAAATCAAATTCGACAGCAACCTATCTTCAAAGACGCAGAGGGATTTGTCGGTTATCAGGTGAGCTAGCGAGGCGGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTTGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAAAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTGTTATTCTCACCCACATAGACAACCAAGTGACCCTTTGGGACGTCTCGCGGAATGAAGCAATCCTCATGCAAGGGAGACCACAAAATCCATTGGCAGCAGTGCTCGCAGGCTGTACAAGGTACAACTTTGCTTCCTATCTTCCTCCATTTGTTTGCACATGCTCTTATAAACCTCCCCTTCATCATATTTTCAGTATGTAGCTTTAGCTAGTGAATTTGAGAGAAAGGGAGATAGAGAGAGAGGTATGGTATTAAAGAGAAACTGAAAGGTATATATAAGAGTGGATGGAGAAGACTATTAAATGGTTGACATGATAGATATAGCTAAGAAGTGGGCTTCGTTTCTGTATGGCATTTTCTCTTTGACAGTGCATTATATATTATAGTAGATGCACCTTTGCCGTGCTGTACCAATTTACTTTATTATATTATTTCATCTCTAAATGATACGAATTGTACGAACATTCATGGCATAGTTTTGAGATGAGAGATTTTATTTATATATTCAAATATGGAAAAATATTATTTTTTACTAAATGGGGAAGAGAGAGATGGATCTGCCATATGAAATCTCTTTCTTCTTTTGGCAAAGCATGGAGTGATGGTTGACTGTATTCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCCTTTTTCCCCCCCCCCCCCCCCAAAGTTCTTGAAGTTAAATTTGTAATGGACCCACATGATTGGAGTGGACAAGAGATAAGATTTGAAAGGGAATGGAGATAACTTTCTTGGGCTTAGTGGCGATGCCACTTATTTCTATGACTTTTAAGTTTTAAGCTTGGATATTGTAGAATATCACCTTGTTCACACTCATAGAGGTGATTTCTTCTTTCCTGAGCTAGTGAATGTAATAATGTAATCTGGATACTTATTATCGATAAACTTCATGCATTATTGCTCATGGAAGATGAATTCTCAGTTATATAATAGATATCTTTTTGGATAACTCTATGATCAGTTTTATTGATGTTTTTTCTTTTCTTTTCTTTTTAGTTACTGCCTTTATTGAGGCTCCACCGCAAATTAACGGCTTCAAAAGACATCTAGATTTTTCTCAAGATTTGTCACTGACTACTAGAATTTTATTCTATATGATCACTACTATGAATTATTGAAGAAGCTCATCTTCATTTGGCAGTTGGTTTGATTTTAGGCCCCAAAAATCAGTTATGTTTCTCGTTGTAAAAACAAGGGAATTATGGATTGATGTTTACTCCAAGTCATCTTTGAGTTGTTGGGAGTAGTTCCTAAATTGTCTTTGTCTGAATAAATAAAGGAAATGGCAATATACTACTTAGTAATAACTACAACTAACTTTTTGAAAAAAGATAAAAAATTATGTTCTTTCAAATCTAAAAAATTAGTGGGATCTATTATTATTTACAATAGAAACAAACTACACAATAATAGAAAATCACAGTGAAAATATACATATGCTTAGAAATAAACCCCATAAGAAAGTAGAAGCTCCTATGCCATACTAGTTAATAGCCAAGTTTCATTCTTTTGCAGAATCATTTCAATAGAGTAAACTTGACTCTATTGATGTGTCAGAATCAGCATAAAGTAAAGTTTGTGTATATCTTATGAAGAAATACATCATCACTTGTCTTATTCATCATAACTCTGAATCATATTTAAATTGTTGCTCTTATCTTTTTTACATGTTTGGATTGATTTGAGCGCACCATAAGATGTTTAGTACTTCATCAGAATCTTTATATCTTTTTATTATGAAGAGTGTGATTTGGAGTACTATAGCCGTACAGATGTGTTTATTTGAAACAGTATCTTATGGGATTCTTATCTTATTATGCAGAGGAAGCAGCTGCATTGCCATCCATTTTTCTTTCATCTGCTGCAGATGGTTTTGGGATAAGCTTCTCTGCAGCATCACATCTGGGAGCAGGTGATGGGCCACTCTCACTCAAACATAACTTTTATTTCAGTTTTCAAACATCTTTCTTCTTAAACTTCATTAAATTTTACATATTTTTTTGTTTGTTTTGGTATTGAAGTCTAGATTTGGTTTCTCTCAGTCATCAGTTCCTCGTATCTGGACCCTTTTTTAAAATTTTCTTCTCAAGTCTGTTTGTATATAAAGAATGAAAGCTGAAAATATTCTCCTTACTAGGAAAATGTAGTCCCATTTCATAATAATTTTGTACTTTGACTCAGTCCTTGTACTCTTAATTTATTAAAGTGGATAAGACCTAGAGTTATAACTTTGATCGTAAGGATCCATCTAGTGGCGTAGCTTCATAATAATTATGTAGAGCTTCAAAGCATAATTTTCTTCAGATTGAACCGACAACCGTTACGATTGTTCGTTATTCCATTTTTGTTCGCATTTCTTACAACTCCCCATTATGTGCATAATGAGATGAAAAAAATACATGAAATAAAAAAAGACTAAAATACTCTCATTATGAATTGATGGACTAGCATTTCTAAAAAAGAATGAAAAAATAACTCTAGCCAACATTATTTTAAAATATATTTTCTTCACATCAAGCATGTCATTACTAGATAAAAATGGTAGGGTAACTCTAATAATTTCTTTGTCCTCAATGCCTCTAAATTTTTCAGGAAATAGTCACTTCAACTGTCCAATATACAAATGAGATAGATGTTTGTTGTCTCAACTATTTTTTAATCTTTTGTTTTTAATAAGTAAATGGATAAATAATAACAAAGTTCTTCGTGTTTTTTTCTTATTACAACAATTATGAAGATAGGGAATCAAATATTTAAACTCAAGGAAGGAAGTGCATGTCAATTATCCAATTGAAGCAAAGTTTTTGTGTTGTTGATTCTTAGGTACGGTGCTTCTCCTTTACTATTTTATTTTTTTTAATCTTCATTTATTTTAGATATGTGAAGCTTGAATATCTATATATGGAGAAACTCTTGCAAGAAAAAGGAGACAAAGCAAGAGGCAAGTCATAA

mRNA sequence

ATCGCATTCATGAATAAATCAAATTCGACAGCAACCTATCTTCAAAGACGCAGAGGGATTTGTCGGTTATCAGGTGAGCTAGCGAGGCGGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTTGATGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAAAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTGTTATTCTCACCCACATAGACAACCAAGTGACCCTTTGGGACGTCTCGCGGAATGAAGCAATCCTCATGCAAGGGAGACCACAAAATCCATTGGCAGCAGTGCTCGCAGGCTGTACAAGAGGAAGCAGCTGCATTGCCATCCATTTTTCTTTCATCTGCTGCAGATGGTTTTGGGATAAGCTTCTCTGCAGCATCACATCTGGGAGCAGATATGTGAAGCTTGAATATCTATATATGGAGAAACTCTTGCAAGAAAAAGGAGACAAAGCAAGAGGCAAGTCATAA

Coding sequence (CDS)

ATCGCATTCATGAATAAATCAAATTCGACAGCAACCTATCTTCAAAGACGCAGAGGGATTTGTCGGTTATCAGGTGAGCTAGCGAGGCGGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTTGATGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAAAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTGTTATTCTCACCCACATAGACAACCAAGTGACCCTTTGGGACGTCTCGCGGAATGAAGCAATCCTCATGCAAGGGAGACCACAAAATCCATTGGCAGCAGTGCTCGCAGGCTGTACAAGAGGAAGCAGCTGCATTGCCATCCATTTTTCTTTCATCTGCTGCAGATGGTTTTGGGATAAGCTTCTCTGCAGCATCACATCTGGGAGCAGATATGTGAAGCTTGAATATCTATATATGGAGAAACTCTTGCAAGAAAAAGGAGACAAAGCAAGAGGCAAGTCATAA

Protein sequence

IAFMNKSNSTATYLQRRRGICRLSGELARRTTLRKRFSSQGMQSFDEIKLILCLIQQCLEQRVIEKANFDYKPSVILTHIDNQVTLWDVSRNEAILMQGRPQNPLAAVLAGCTRGSSCIAIHFSFICCRWFWDKLLCSITSGSRYVKLEYLYMEKLLQEKGDKARGKS
BLAST of Lsi01G013220 vs. TrEMBL
Match: A0A0A0KEQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446320 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.2e-32
Identity = 84/130 (64.62%), Postives = 95/130 (73.08%), Query Frame = 1

Query: 4   MNKSNSTATYLQRRRGICRLSGEL--ARRTTLRKRFSSQGMQSFDEIKLILCLIQQCLEQ 63
           M   N+ ++  QR   + R +  +   +   L  R +  G+ S  EIKLILCLIQQCLEQ
Sbjct: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCS--EIKLILCLIQQCLEQ 60

Query: 64  RVIEKANFDYKPSVILTHIDNQVTLWDVSRNEAILMQGRPQNPLAAVLAGCTRGSSCIAI 123
           RVIEKANFDYKPS+ILTHIDNQVTL DVSR+EAILMQGRPQNPLAAVL GC R SSC  I
Sbjct: 61  RVIEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSC--I 120

Query: 124 HFSFICCRWF 132
           HFSFIC R F
Sbjct: 121 HFSFICRRRF 126

BLAST of Lsi01G013220 vs. TrEMBL
Match: W9RWZ4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024366 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 44 SFDEIKLILCLIQQCLEQRVIEKANFDYKPSVILTHIDNQVTLWDV 90
          S  E+KLI  L++QCLE+RVIE+ +FD KP V+L +ID+QVTLWD+
Sbjct: 40 SSGEVKLIASLVKQCLEERVIEQGDFDDKPLVVLAYIDHQVTLWDI 85

BLAST of Lsi01G013220 vs. NCBI nr
Match: gi|700192966|gb|KGN48170.1| (hypothetical protein Csa_6G446320 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 84/130 (64.62%), Postives = 95/130 (73.08%), Query Frame = 1

Query: 4   MNKSNSTATYLQRRRGICRLSGEL--ARRTTLRKRFSSQGMQSFDEIKLILCLIQQCLEQ 63
           M   N+ ++  QR   + R +  +   +   L  R +  G+ S  EIKLILCLIQQCLEQ
Sbjct: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCS--EIKLILCLIQQCLEQ 60

Query: 64  RVIEKANFDYKPSVILTHIDNQVTLWDVSRNEAILMQGRPQNPLAAVLAGCTRGSSCIAI 123
           RVIEKANFDYKPS+ILTHIDNQVTL DVSR+EAILMQGRPQNPLAAVL GC R SSC  I
Sbjct: 61  RVIEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSC--I 120

Query: 124 HFSFICCRWF 132
           HFSFIC R F
Sbjct: 121 HFSFICRRRF 126

BLAST of Lsi01G013220 vs. NCBI nr
Match: gi|703141482|ref|XP_010107513.1| (hypothetical protein L484_024366 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 44 SFDEIKLILCLIQQCLEQRVIEKANFDYKPSVILTHIDNQVTLWDV 90
          S  E+KLI  L++QCLE+RVIE+ +FD KP V+L +ID+QVTLWD+
Sbjct: 40 SSGEVKLIASLVKQCLEERVIEQGDFDDKPLVVLAYIDHQVTLWDI 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEQ0_CUCSA7.2e-3264.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446320 PE=4 SV=1[more]
W9RWZ4_9ROSA1.6e-0760.87Uncharacterized protein OS=Morus notabilis GN=L484_024366 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700192966|gb|KGN48170.1|1.0e-3164.62hypothetical protein Csa_6G446320 [Cucumis sativus][more]
gi|703141482|ref|XP_010107513.1|2.3e-0760.87hypothetical protein L484_024366 [Morus notabilis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G013220.1Lsi01G013220.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G013220Wax gourdlsiwgoB147
Lsi01G013220Bottle gourd (USVL1VR-Ls)lsilsiB025
Lsi01G013220Bottle gourd (USVL1VR-Ls)lsilsiB070
Lsi01G013220Bottle gourd (USVL1VR-Ls)lsilsiB086
Lsi01G013220Cucumber (Gy14) v1cgylsiB190
Lsi01G013220Cucumber (Gy14) v1cgylsiB219
Lsi01G013220Cucumber (Gy14) v1cgylsiB494
Lsi01G013220Cucumber (Gy14) v1cgylsiB626
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB230
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB518
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB566
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB597
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB638
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB747
Lsi01G013220Cucurbita maxima (Rimu)cmalsiB786
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB218
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB260
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB503
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB547
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB582
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB626
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB739
Lsi01G013220Cucurbita moschata (Rifu)cmolsiB774
Lsi01G013220Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G013220Cucurbita pepo (Zucchini)cpelsiB324
Lsi01G013220Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G013220Cucurbita pepo (Zucchini)cpelsiB491
Lsi01G013220Cucurbita pepo (Zucchini)cpelsiB702
Lsi01G013220Wild cucumber (PI 183967)cpilsiB167
Lsi01G013220Wild cucumber (PI 183967)cpilsiB441
Lsi01G013220Wild cucumber (PI 183967)cpilsiB442
Lsi01G013220Cucumber (Chinese Long) v2culsiB168
Lsi01G013220Cucumber (Chinese Long) v2culsiB436
Lsi01G013220Melon (DHL92) v3.5.1lsimeB134
Lsi01G013220Melon (DHL92) v3.5.1lsimeB139
Lsi01G013220Melon (DHL92) v3.5.1lsimeB151
Lsi01G013220Watermelon (Charleston Gray)lsiwcgB118
Lsi01G013220Watermelon (Charleston Gray)lsiwcgB130
Lsi01G013220Watermelon (Charleston Gray)lsiwcgB142
Lsi01G013220Watermelon (97103) v1lsiwmB127
Lsi01G013220Watermelon (97103) v1lsiwmB135
Lsi01G013220Watermelon (97103) v1lsiwmB152
Lsi01G013220Watermelon (97103) v1lsiwmB161
Lsi01G013220Cucumber (Gy14) v2cgyblsiB153
Lsi01G013220Cucumber (Gy14) v2cgyblsiB399
Lsi01G013220Melon (DHL92) v3.6.1lsimedB133
Lsi01G013220Melon (DHL92) v3.6.1lsimedB146
Lsi01G013220Silver-seed gourdcarlsiB138
Lsi01G013220Silver-seed gourdcarlsiB214
Lsi01G013220Silver-seed gourdcarlsiB223
Lsi01G013220Silver-seed gourdcarlsiB622
Lsi01G013220Cucumber (Chinese Long) v3cuclsiB185
Lsi01G013220Cucumber (Chinese Long) v3cuclsiB463
Lsi01G013220Watermelon (97103) v2lsiwmbB116
Lsi01G013220Watermelon (97103) v2lsiwmbB124
Lsi01G013220Watermelon (97103) v2lsiwmbB140