CSPI06G24550 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G24550
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 21945844 .. 21949637 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATATGCATAATTGAGTTCATAGCTCTGAGAGCTTGTCAAGTCCAATATAGACGGATTCATAGATCTAGTAGTCTAGACTAGGAGGGACAGTGAATGGTGTTCACTATTTTCCCATTTTCTTACTGTGATCAAAGATGATGGTTGGAGCTTGTTGGGAATTAGTTATGGAGGATAATGCAAATAGCATGCAAGCTTTAAAAATACTATAAAACAACATTTGCGGGATTGTTATTATCATTAATACTTGCAGAAAATGTTCCAGATGAGACTGATTATGTGAAAGGTGTGAGAGAAGGATGCAAAATAGGCTTGAATAGTTCCATTTGATTGCCGGGTTGCACAAGTCAGAGGAAATTGTTTCGAGTGACTTGTTGAATATGATGAAGCATATGCAATATTTGGTGGTAACTGATTTGTTGTTGCTGTGAAGGACTTTCAGCAACTTGCTGCTAAAAGCACTATTTTCTTATAAAGTGGCATTAGGACCCAAGTGATAACACTACTTTTTTAATCAAGTTACATTAGTATACAACAAATCGTGGCTAAATACATATCAGCATTCTCAAAGAGGATTTAGATCTTCAGAATAAATGAAATTCGACAACAACCTATCTTCAAAGACGCAAAGGGATTTGCCGGTTATCAGGTGCGCTAGCGCGATCGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTGGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAGAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTCTTATTCTCACCCACATAGACAACCAAGTGACCCTTGGGGACGTCTCGCGGGATGAAGCAATCCTCATGCAAGGGAGACCACAAAACCCATTGGCAGCAGTGCTCACAGGCTGTGCAAGGTACAACTTTACTCCCTATCTTCCTCCATTTGTTTGCACATGCTCTTATAAACCTCCCCTTCTTCATATTCAGTATGTAGCTGTAGCTAGTGAATTTGAGAGAAGAGAGATAGAGAGAGAGGTATGGTATTAAAGAGAAGCTGATAGGTATATATAAGAGTGGATGGAGAAGACTATTAAATGGTTGACATGATAGATATAGCTAAGCAGTGGGCTTCGTTTCTGTATGGCATTTTCTCTTTGACAGTGCATTTTATATTATAGTAGATGCACCTTTGCCGTGCTGTACCGATTTACTTTATTATATTATTGCATCTCTAAATGATACGAATTGTACGAACATTCATGGCATAGTTTTGAGATGAGAGATTTTATATATTCAAATATAGAAAAATATTATACTTTCCATATGGGGAAGAGAGAGATAGATGGATCTGCCATATGAAATCTCTTTCTTCTTTTGGCAAAGCATGGTGTAATGGTTGACTGATTTTTTTCCCCAAAGTTCTTGTAGTTAAATTTGTAATGGACCCACATGATTGGAGTGGACAAGAGATAAGATTTGAAAGAGGGGATGGAGATAACTTTCTTGGGCTTAGTGGCGATCCCACTTATTTCTATGACTTTTAAGTTTTAAGCTTGGATATTGTAGAATATCAATTTGTTCACACTCATAGAGGTGATTTCATCTCTTCTAAGCCACTTTTTATTGATAAACTTCATGCATTATTGCTCATGGAAGATGAATTTTCATGGTAGATAACTTTTTGGATAACTGTATGATCATTGTTATTGACCACTATGAGTGCTCATCTTTATTTGGTAGTTGCTTTGATTTTAGGCCCCAAAAACTATGTTTCTCGTTGAAAAACAAGGGAATTATGGATATTGATGTTTATTCAAATTATCTTGGTGTTGGGAGCACTTCCTACAAATTTTTTTGTCTGAAATAGAAAAAGGAAATGACAATGTACTACATAGTAATAACTGCAACTAACTTTTTGAAAAAAGATATCACTGTTCTTTCAAATCTAAAAAATTAGTGGGATCTATTATTCTACAGTAGAAACAAACTACAAAATAATATACATTTGCTTAGAAATAAACCCCATAAGAAAGTAGACACGCTCCTATACCATACTTAGTAAATAGCCTTAGCCAAGTTTCATTCTTTTGCAGAACCATTTCAACGTAGTTAATTTGACAATATTGATACGTCAGAATCAGCATAAAGCAAAGTGTGTAGCAAAGTGTGTATATCTTGTGAAAAAAAATACATCATCACTTGTCTTATTCATCATAGCTCTTGAGTCATATTTAAATTGTTGCTCTTATGACTTATCTTTTTTTTTTTTTTACATATTTGGATTGATTTGAGCGCACCATGAGATGTTAAGTACTTCATCAGAATCTTTATATCTATTTTATTATGAAGAATTTGGTTTTGGTGTACTATAGCCGTACAGTTATGTTTATTTGAAACAGTACCTTATGGCCTATGGGATTCTTATCTTAATATTATGCAGAGAAAGCAGCTGCATCCATTTTTCTTTCATCTGCTGCAGAAGGTTTTGTTTTGGGATAAGCTTCTCTGCAGCATTACATCTGGGTGCAGGTGATGGGCCACTCTCACTCATACATAACTTTTATTTCAGTTTTTCAAACCTCTTTCTTCTTGAACTTCAATAAATTTTACATATATTTTTGTTTGTTTTCATATTGAAGTCTAGATTTGGTTCCTTTCAGAAATCAGTTCCTCGTATCTGGACCCTTTTTTTAAATTTTCTTCTCAAGTCTGTTCGTATATAAAGAATGAAAGCTGAAAATATTCTCCTTACGAGGAAAATGTAGTCCCATTTCATAATATAATTTTGTACTTTGACTCAGTCCTTTGTACTCTTAATTTATTAAAGTGGATAAGACCTATGATATAGAGTTCTAAGTTTGATCAGAAGGATCCTTCTAGTAGTGTAGCTTCAAATAATTATATAGAGCTTTAAACTATAATTTCCTTCAAGTTGAACCTACAATCGTTTCCTTTGTTCGTTATTTCATTAAAAAAAAATTTAATTTGTTCTCATTTCATATTATTCCCTTTTATGTGCATAATGAGATGAAAACAATACATGAAATAAAAAAAAAGGACTGAAATGCTCCCATTATGGATTGATGGGACTTGCGTTTCTAGCCAACATTATTTTAAAATATCTTTTCTTTGCCTCAAGTGTGTTGTTACTGGATAAAAATGATCACTCTGATAATGTCTTTGTCCTCAATGCCTCCAAATTTTCCTGAAGTAGTCACTCAACGGTCTTTGATGGTTATACAGGTATCCATAATACCAACGAGATGGATGTTGTGTTCCAACGACTTCTTAGGTTTCTATGATCCTAATAAATAAAATGGATAATTCATAGCAAGATTTCCATGTTATCTTAGTACAATTGCAAGGATAGAAAGAATATGAGACCAAACTTTCCAATTCAAGGAAGGGAATGCATGTCAATTATCATTGAAGTAAAGTCGATGTGTTGTTGATTCTTAGGCATAGTGCTTCATTTTCCTTCCCTAATTTTTTTTATATAATCTTCCTTTATCTTAGAAGTGTGAAGATAGAGAGCATATTATTTGGAGCAATCTAACATATGGAGAAACTCTGGCAACAAAAGGAGACAAAGCAAGAGGCAAGTCATGAAAGATGAAACATGCTAGAGGAATAATGAGTTTCCCTTTTTTCTTTTTCTCTCTTCTTTTGGTAAAATAATGTGTTGAATTGAAACATACAAATGAATTTTTGGGCATTATGATGATAAAAGTGTGGTGAAAAGGTAGGATGGGCAATGCCCCCAATAATTTCATTGTGATTCCAAC

mRNA sequence

ATGAAATTCGACAACAACCTATCTTCAAAGACGCAAAGGGATTTGCCGGTTATCAGGTGCGCTAGCGCGATCGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTGGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAGAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTCTTATTCTCACCCACATAGACAACCAAGTGACCCTTGGGGACGTCTCGCGGGATGAAGCAATCCTCATGCAAGGGAGACCACAAAACCCATTGGCAGCAGTGCTCACAGGCTGTGCAAGAGAAAGCAGCTGCATCCATTTTTCTTTCATCTGCTGCAGAAGGTTTTGTTTTGGGATAAGCTTCTCTGCAGCATTACATCTGGGTGCAGAAGTGTGA

Coding sequence (CDS)

ATGAAATTCGACAACAACCTATCTTCAAAGACGCAAAGGGATTTGCCGGTTATCAGGTGCGCTAGCGCGATCGACAACACTAAGGAAAAGGTTCTCATCACAAGGAATGCAGAGTTTGGAGTTTGCAGTGAAATCAAACTCATCTTGTGCTTGATCCAGCAATGCCTTGAACAGAGGGTGATTGAGAAGGCTAATTTTGATTACAAACCTTCTCTTATTCTCACCCACATAGACAACCAAGTGACCCTTGGGGACGTCTCGCGGGATGAAGCAATCCTCATGCAAGGGAGACCACAAAACCCATTGGCAGCAGTGCTCACAGGCTGTGCAAGAGAAAGCAGCTGCATCCATTTTTCTTTCATCTGCTGCAGAAGGTTTTGTTTTGGGATAAGCTTCTCTGCAGCATTACATCTGGGTGCAGAAGTGTGA
Homology
[Close]
BLAST of CSPI06G24550 vs. TrEMBL
Match: A0A0A0KEQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446320 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1 

Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120
           IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF
Sbjct: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120

Query: 121 ICCRRFCFGISFSAALHLGA 141
           IC RRFCFGISFSAALHLGA
Sbjct: 121 ICRRRFCFGISFSAALHLGA 140

[Close]
BLAST of CSPI06G24550 vs. TrEMBL
Match: W9RWZ4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024366 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-10
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 25 DNTKEKVLITRNAEFGVCS-EIKLILCLIQQCLEQRVIEKANFDYKPSLILTHIDNQVTL 84
          ++ +EK L+  +AEFGV S E+KLI  L++QCLE+RVIE+ +FD KP ++L +ID+QVTL
Sbjct: 23 NDVEEKALVAGDAEFGVSSGEVKLIASLVKQCLEERVIEQGDFDDKPLVVLAYIDHQVTL 82

Query: 85 GDVSRD 90
           D+  D
Sbjct: 83 WDILWD 88

[Close]
BLAST of CSPI06G24550 vs. NCBI nr
Match: gi|700192966|gb|KGN48170.1| (hypothetical protein Csa_6G446320 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1 

Query: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60
           MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV
Sbjct: 1   MKFDNNLSSKTQRDLPVIRCASAIDNTKEKVLITRNAEFGVCSEIKLILCLIQQCLEQRV 60

Query: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120
           IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF
Sbjct: 61  IEKANFDYKPSLILTHIDNQVTLGDVSRDEAILMQGRPQNPLAAVLTGCARESSCIHFSF 120

Query: 121 ICCRRFCFGISFSAALHLGA 141
           IC RRFCFGISFSAALHLGA
Sbjct: 121 ICRRRFCFGISFSAALHLGA 140

[Close]
BLAST of CSPI06G24550 vs. NCBI nr
Match: gi|703141482|ref|XP_010107513.1| (hypothetical protein L484_024366 [Morus notabilis])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 25 DNTKEKVLITRNAEFGVCS-EIKLILCLIQQCLEQRVIEKANFDYKPSLILTHIDNQVTL 84
          ++ +EK L+  +AEFGV S E+KLI  L++QCLE+RVIE+ +FD KP ++L +ID+QVTL
Sbjct: 23 NDVEEKALVAGDAEFGVSSGEVKLIASLVKQCLEERVIEQGDFDDKPLVVLAYIDHQVTL 82

Query: 85 GDVSRD 90
           D+  D
Sbjct: 83 WDILWD 88

The following BLAST results are available for this feature:
BLAST of CSPI06G24550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G24550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEQ0_CUCSA2.1e-7299.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446320 PE=4 SV=1[more]
W9RWZ4_9ROSA8.6e-1053.03Uncharacterized protein OS=Morus notabilis GN=L484_024366 PE=4 SV=1[more]
BLAST of CSPI06G24550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G24550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192966|gb|KGN48170.1|3.0e-7299.29hypothetical protein Csa_6G446320 [Cucumis sativus][more]
gi|703141482|ref|XP_010107513.1|1.2e-0953.03hypothetical protein L484_024366 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G24550.1CSPI06G24550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G24550Csa6G446320Cucumber (Chinese Long) v2cpicuB313
CSPI06G24550Lsi01G013220Bottle gourd (USVL1VR-Ls)cpilsiB440
CSPI06G24550MELO3C033472.2Melon (DHL92) v3.6.1cpimedB498
CSPI06G24550CsaV3_6G039750Cucumber (Chinese Long) v3cpicucB363
CSPI06G24550Bhi03G001218Wax gourdcpiwgoB635
CSPI06G24550CsGy6G023950Cucumber (Gy14) v2cgybcpiB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G24550Wild cucumber (PI 183967)cpicpiB124
CSPI06G24550Wild cucumber (PI 183967)cpicpiB186
CSPI06G24550Cucumber (Gy14) v1cgycpiB168
CSPI06G24550Cucumber (Gy14) v1cgycpiB462
CSPI06G24550Cucumber (Gy14) v1cgycpiB571
CSPI06G24550Cucurbita maxima (Rimu)cmacpiB271
CSPI06G24550Cucurbita maxima (Rimu)cmacpiB689
CSPI06G24550Cucurbita maxima (Rimu)cmacpiB857
CSPI06G24550Cucurbita maxima (Rimu)cmacpiB894
CSPI06G24550Cucurbita moschata (Rifu)cmocpiB259
CSPI06G24550Cucurbita moschata (Rifu)cmocpiB681
CSPI06G24550Cucurbita moschata (Rifu)cmocpiB838
CSPI06G24550Cucurbita moschata (Rifu)cmocpiB874
CSPI06G24550Cucumber (Chinese Long) v2cpicuB282
CSPI06G24550Cucumber (Chinese Long) v2cpicuB315
CSPI06G24550Melon (DHL92) v3.5.1cpimeB481
CSPI06G24550Melon (DHL92) v3.5.1cpimeB487
CSPI06G24550Melon (DHL92) v3.5.1cpimeB514
CSPI06G24550Watermelon (Charleston Gray)cpiwcgB444
CSPI06G24550Watermelon (Charleston Gray)cpiwcgB463
CSPI06G24550Watermelon (Charleston Gray)cpiwcgB488
CSPI06G24550Watermelon (97103) v1cpiwmB467
CSPI06G24550Watermelon (97103) v1cpiwmB481
CSPI06G24550Watermelon (97103) v1cpiwmB524
CSPI06G24550Watermelon (97103) v1cpiwmB534
CSPI06G24550Cucurbita pepo (Zucchini)cpecpiB081
CSPI06G24550Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G24550Cucurbita pepo (Zucchini)cpecpiB627
CSPI06G24550Cucurbita pepo (Zucchini)cpecpiB880
CSPI06G24550Bottle gourd (USVL1VR-Ls)cpilsiB452
CSPI06G24550Melon (DHL92) v3.6.1cpimedB420
CSPI06G24550Melon (DHL92) v3.6.1cpimedB473
CSPI06G24550Cucumber (Gy14) v2cgybcpiB140
CSPI06G24550Cucumber (Gy14) v2cgybcpiB290
CSPI06G24550Silver-seed gourdcarcpiB0187
CSPI06G24550Silver-seed gourdcarcpiB0271
CSPI06G24550Silver-seed gourdcarcpiB0282
CSPI06G24550Cucumber (Chinese Long) v3cpicucB334
CSPI06G24550Cucumber (Chinese Long) v3cpicucB367
CSPI06G24550Watermelon (97103) v2cpiwmbB442
CSPI06G24550Watermelon (97103) v2cpiwmbB458
CSPI06G24550Watermelon (97103) v2cpiwmbB479
CSPI06G24550Wax gourdcpiwgoB532