Lsi01G012200 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G012200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionIron-sulfur assembly IscA-like protein
Locationchr01 : 10418105 .. 10418602 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAATTGTAATTGTTTGTTCGTCGACCAAAAACCCATCAGAATCATGAAAACCGACGGCAAAATCCTCGAATACAAATCCCCCACTAGAGTCTTCCAAGTCCTCTCCGATTTCTCCGGCCACCAAATCTCCGACGCCGTTCCAGTCACCCACCATCTCCACCGTACCGCCAAGCTCCTCTCCGGCCACCTCTATTTTCTGATCCCCACGGAAGCAGAGGAGAAAAAGCCGAAAAAGGCAGTCCGGTTTGCGGAACCAGAGAAGGAAATCGGCGGCGGGGTGGTCAGAATAAAAGTGGTTATGACGAAGAAGGAGCTGCAGGAGATGGTTGAAAGAGGGGGGATTACGGCGGAGGAAATGATTTGTAAGATAAAAAGTGGAAGTGGGGAAATTAATTGCAGAGAATTGGAGGGAGAGGATGAGGAATCGGAGTTGCAGAGATGGAAGCCGGTTCTTGAAAGTATACCGGAAAGTGAAGTTGCTTGCCAGTGTTAG

mRNA sequence

ATGGGCAATTGTAATTGTTTGTTCGTCGACCAAAAACCCATCAGAATCATGAAAACCGACGGCAAAATCCTCGAATACAAATCCCCCACTAGAGTCTTCCAAGTCCTCTCCGATTTCTCCGGCCACCAAATCTCCGACGCCGTTCCAGTCACCCACCATCTCCACCGTACCGCCAAGCTCCTCTCCGGCCACCTCTATTTTCTGATCCCCACGGAAGCAGAGGAGAAAAAGCCGAAAAAGGCAGTCCGGTTTGCGGAACCAGAGAAGGAAATCGGCGGCGGGGTGGTCAGAATAAAAGTGGTTATGACGAAGAAGGAGCTGCAGGAGATGGTTGAAAGAGGGGGGATTACGGCGGAGGAAATGATTTGTAAGATAAAAAGTGGAAGTGGGGAAATTAATTGCAGAGAATTGGAGGGAGAGGATGAGGAATCGGAGTTGCAGAGATGGAAGCCGGTTCTTGAAAGTATACCGGAAAGTGAAGTTGCTTGCCAGTGTTAG

Coding sequence (CDS)

ATGGGCAATTGTAATTGTTTGTTCGTCGACCAAAAACCCATCAGAATCATGAAAACCGACGGCAAAATCCTCGAATACAAATCCCCCACTAGAGTCTTCCAAGTCCTCTCCGATTTCTCCGGCCACCAAATCTCCGACGCCGTTCCAGTCACCCACCATCTCCACCGTACCGCCAAGCTCCTCTCCGGCCACCTCTATTTTCTGATCCCCACGGAAGCAGAGGAGAAAAAGCCGAAAAAGGCAGTCCGGTTTGCGGAACCAGAGAAGGAAATCGGCGGCGGGGTGGTCAGAATAAAAGTGGTTATGACGAAGAAGGAGCTGCAGGAGATGGTTGAAAGAGGGGGGATTACGGCGGAGGAAATGATTTGTAAGATAAAAAGTGGAAGTGGGGAAATTAATTGCAGAGAATTGGAGGGAGAGGATGAGGAATCGGAGTTGCAGAGATGGAAGCCGGTTCTTGAAAGTATACCGGAAAGTGAAGTTGCTTGCCAGTGTTAG

Protein sequence

MGNCNCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGHLYFLIPTEAEEKKPKKAVRFAEPEKEIGGGVVRIKVVMTKKELQEMVERGGITAEEMICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPESEVACQC
Homology
[Close]
BLAST of Lsi01G012200 vs. TrEMBL
Match: A0A0A0KHH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452650 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 8.8e-75
Identity = 149/172 (86.63%), Postives = 156/172 (90.70%), Query Frame = 1 

Query: 1   MGNCNCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKL 60
           MGNCNCLF+D KPIRIMKTDGKILEYKSPTRVFQVLSDFSGH+ISDAVPV+HHLHRTAKL
Sbjct: 1   MGNCNCLFIDNKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHEISDAVPVSHHLHRTAKL 60

Query: 61  LSGHLYFLIPTEAEEKKPKKAVRFAEPEKE--IGGGVVRIKVVMTKKELQEMVERGGITA 120
           LSGHLYFLIP E EEKKPKKAVRFAEPEKE   GGGVVRIKVVMTKKELQEMVERGGI+A
Sbjct: 61  LSGHLYFLIPKEPEEKKPKKAVRFAEPEKETATGGGVVRIKVVMTKKELQEMVERGGISA 120

Query: 121 EEMICKIKSGSGEINCR-ELEGE------DEESELQRWKPVLESIPESEVAC 164
           EEMICKIK+G GEI+ R E+E E      DEESELQRWKPVLESIPESEVAC
Sbjct: 121 EEMICKIKNGCGEISSRSEMEEEEDDDDDDEESELQRWKPVLESIPESEVAC 172

[Close]
BLAST of Lsi01G012200 vs. TrEMBL
Match: F6HKL5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03260 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 73/157 (46.50%), Postives = 108/157 (68.79%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL   +K I+IM+ DGK+LEYK+P +V QVLS+FSG  ISD +PV  HL +  +++ G 
Sbjct: 3   NCLAQQEKIIKIMRPDGKVLEYKTPLKVQQVLSEFSGCAISDTLPVIQHLRKDMEMVGGQ 62

Query: 65  LYFLIPTEAEEKK-PKKAVRFAEPEKEI--GGGVVRIKVVMTKKELQEMVERGGITAEEM 124
           LY+LIP      +  KKA+RF++P+ E   G GVVRI++V+TK+EL+EM+ +GG++ + M
Sbjct: 63  LYYLIPVPLPSPEVEKKALRFSDPQVEADQGTGVVRIRLVITKQELKEMLRKGGVSVDHM 122

Query: 125 ICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPE 159
           + +++ G G     +L+  D     + WKPVLESIPE
Sbjct: 123 VSQLQRGQGRNGVHKLD-VDGNGNCRGWKPVLESIPE 158

[Close]
BLAST of Lsi01G012200 vs. TrEMBL
Match: A0A067KZP0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06753 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-29
Identity = 72/157 (45.86%), Postives = 105/157 (66.88%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL + +K +++MK DGKILEYKSP RV QVLSDFSG  +S +V    HL   AKLL G+
Sbjct: 3   NCLVLQEKVVKVMKPDGKILEYKSPIRVQQVLSDFSGFAVSASVQALQHLLPDAKLLGGN 62

Query: 65  LYFLIPTEAEEKKPKKAVRFAEPE---KEIGGGVVRIKVVMTKKELQEMVERGGITAEEM 124
           LY+L+P      + KK VRF+ PE   K+   GVVRIK+V++K+ELQE++++GG++ + +
Sbjct: 63  LYYLVPLPLPSPEAKKKVRFSIPEGEDKQETTGVVRIKLVISKQELQELLQKGGVSIDYI 122

Query: 125 ICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPE 159
           + + +    +     ++  D +   + WKPVLESIPE
Sbjct: 123 VSQFQD---QKRVDGVDISDNDDNRKAWKPVLESIPE 156

[Close]
BLAST of Lsi01G012200 vs. TrEMBL
Match: A0A061ET98_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_022601 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.3e-29
Identity = 74/158 (46.84%), Postives = 106/158 (67.09%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL +D K I++MKTDGKILEY++P +V QVLSDFSGH +SD+     HL   AKLL G 
Sbjct: 3   NCLVLDLKIIKVMKTDGKILEYQAPIKVQQVLSDFSGHALSDSFSGLQHLRPDAKLLRGQ 62

Query: 65  LYFLIPTEA-EEKKPKKAVRFAEPE---KEIGGGVVRIKVVMTKKELQEMVERGGITAEE 124
           LY+L+P  +  +K  KK VRF+ PE   ++   GVVRIK++++K+ELQE++++  ++  +
Sbjct: 63  LYYLVPVPSPHQKGEKKKVRFSTPEVNDEQGSAGVVRIKLIISKQELQELLQKERVSVHD 122

Query: 125 MICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPE 159
           MI +I+S        + +G D     + WKPVLESI E
Sbjct: 123 MISQIQSKESTKGVDKSDGGD---NCKGWKPVLESIDE 157

[Close]
BLAST of Lsi01G012200 vs. TrEMBL
Match: A0A0D2NS61_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G239800 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.5e-29
Identity = 70/159 (44.03%), Postives = 110/159 (69.18%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL +++K +R+MKTDGKILEY+ P +V QVLSDFS H +S++     +LH   KLL G 
Sbjct: 3   NCLVLEEKVVRVMKTDGKILEYRRPIKVQQVLSDFSDHALSESFSACRNLHPDTKLLPGM 62

Query: 65  LYFLIPTEAEEKKPKKAVRFA-----EPEKEIGGGVVRIKVVMTKKELQEMVERGGITAE 124
           LY+L+P+ + + K KK VRF+     + ++E   GVVRIK++++KKEL+++V++ G++  
Sbjct: 63  LYYLVPSPSIKSK-KKKVRFSSTPEVKDDEEGSHGVVRIKLIISKKELEKLVQKDGVSVH 122

Query: 125 EMICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPE 159
           EM+ KI+S    IN  + + + ++   ++WKP LESI E
Sbjct: 123 EMVSKIQS-KQSINGVDDDDDGDDDSCRKWKPALESIAE 159

[Close]
BLAST of Lsi01G012200 vs. TAIR10
Match: AT3G10120.1 (AT3G10120.1 unknown protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-24
Identity = 65/179 (36.31%), Postives = 104/179 (58.10%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGH-QISDAVPVTHHLHRTAKLLSG 64
           NCL +++K I+IM+ DGK++EY+ P +V  +L+ FS H  + D++    HLH  AKLL G
Sbjct: 3   NCLVMEKKVIKIMRNDGKVVEYRGPMKVHHILTQFSPHYSLFDSLTNNCHLHPQAKLLCG 62

Query: 65  HLYFLIPTEAEE----KKPKKAVRFAEPE------------------KEIGGGVVRIKVV 124
            LY+L+P E       KK  K VRFA PE                  KE   GVVR+K+V
Sbjct: 63  RLYYLLPQETNSIKHMKKTMKKVRFANPEVEKEEQEEDRLTDCCDNTKEKTNGVVRVKMV 122

Query: 125 MTKKELQEMVERGGITAEEMICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPESE 161
           ++K+EL+++++ G +   EM+ +       +  + L  +D+E   + W+P+L+SIPE++
Sbjct: 123 VSKQELEKLLQGGSV--HEMVYR------TLAKQHLCDDDDECHKEGWRPLLDSIPETD 173

[Close]
BLAST of Lsi01G012200 vs. TAIR10
Match: AT5G03890.1 (AT5G03890.1 unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17
Identity = 64/178 (35.96%), Postives = 91/178 (51.12%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL +++K I+I++ DGK+LEY+ P  V  +L+ FSGH IS       HL   AKLLSG 
Sbjct: 3   NCLVMEKKVIKIVRDDGKVLEYREPISVHHILTQFSGHSISHN---NTHLLPDAKLLSGR 62

Query: 65  LYFLIPTEAEEKKPKKAVRFAEPEKEIGGGVVRIKVVMTKKELQEMVERGGITAEEMICK 124
           LY+L+PT   +KK  K V FA PE E  G    ++      E    ++ G  T    + +
Sbjct: 63  LYYLLPTTMTKKKVNKKVTFANPEVE--GDERLLREEEDSSESNSNID-GDDTKNVTVVR 122

Query: 125 IK-------------SGS-GEINCRELE-------GEDEESELQR-WKPVLESIPESE 161
           +K              GS  E+  + LE        +D++ E    W+P L+SIPESE
Sbjct: 123 MKIVVHKQELEKLLQGGSVHEMMYQTLEKQLLLTSSDDDDLECNSGWRPALDSIPESE 174

[Close]
BLAST of Lsi01G012200 vs. TAIR10
Match: AT3G21680.1 (AT3G21680.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-06
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1 

Query: 68  LIPTEAEEKKPKKAVRFAEPEKEIGGGVVRIKVVMTKKELQEMV-ERGGITAEEMICKIK 127
           L+    E K   +    +E   E    VVRIKVV+TKKEL++++  + GI + + +  + 
Sbjct: 24  LVKLLEEGKTSFRGEEESERSTEEESKVVRIKVVVTKKELRQILGHKNGINSIQQLVHVL 83

Query: 128 SGSGE-INCRELEGEDEESELQRWKPVLESIPES 160
             SG  I+    E +++E   + W+P LESIPES
Sbjct: 84  KDSGRNISMASYEEDEKEEGDENWRPTLESIPES 117

[Close]
BLAST of Lsi01G012200 vs. NCBI nr
Match: gi|659125222|ref|XP_008462573.1| (PREDICTED: uncharacterized protein LOC103500900 [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 4.3e-75
Identity = 150/174 (86.21%), Postives = 154/174 (88.51%), Query Frame = 1 

Query: 1   MGNCNCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKL 60
           MGNCNCLFVD KPIRIMKTDGKILEYKSPTRVFQVLSDFSGH+ISDAVPVTHHLHRTAKL
Sbjct: 1   MGNCNCLFVDHKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHEISDAVPVTHHLHRTAKL 60

Query: 61  LSGHLYFLIPTEAEEKKPKKAVRFAEPEKE-----IGGGVVRIKVVMTKKELQEMVERGG 120
           LSGHLYFLIP E  EKKPKKAVRFAEPEKE      GGGVVRIKVVMTKKELQEMVERGG
Sbjct: 61  LSGHLYFLIPKEPHEKKPKKAVRFAEPEKETASATTGGGVVRIKVVMTKKELQEMVERGG 120

Query: 121 ITAEEMICKIKSGSGEINCR------ELEGEDEESELQRWKPVLESIPESEVAC 164
           I+AEEMICKIK+G GEI+ R      E E EDEESELQRWKPVLESIPESEVAC
Sbjct: 121 ISAEEMICKIKNGRGEISSRSEMEEEEEEEEDEESELQRWKPVLESIPESEVAC 174

[Close]
BLAST of Lsi01G012200 vs. NCBI nr
Match: gi|778717509|ref|XP_004143322.2| (PREDICTED: uncharacterized protein LOC101213283 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-74
Identity = 149/172 (86.63%), Postives = 156/172 (90.70%), Query Frame = 1 

Query: 1   MGNCNCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKL 60
           MGNCNCLF+D KPIRIMKTDGKILEYKSPTRVFQVLSDFSGH+ISDAVPV+HHLHRTAKL
Sbjct: 1   MGNCNCLFIDNKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHEISDAVPVSHHLHRTAKL 60

Query: 61  LSGHLYFLIPTEAEEKKPKKAVRFAEPEKE--IGGGVVRIKVVMTKKELQEMVERGGITA 120
           LSGHLYFLIP E EEKKPKKAVRFAEPEKE   GGGVVRIKVVMTKKELQEMVERGGI+A
Sbjct: 61  LSGHLYFLIPKEPEEKKPKKAVRFAEPEKETATGGGVVRIKVVMTKKELQEMVERGGISA 120

Query: 121 EEMICKIKSGSGEINCR-ELEGE------DEESELQRWKPVLESIPESEVAC 164
           EEMICKIK+G GEI+ R E+E E      DEESELQRWKPVLESIPESEVAC
Sbjct: 121 EEMICKIKNGCGEISSRSEMEEEEDDDDDDEESELQRWKPVLESIPESEVAC 172

[Close]
BLAST of Lsi01G012200 vs. NCBI nr
Match: gi|719974464|ref|XP_010245005.1| (PREDICTED: uncharacterized protein LOC104588679 [Nelumbo nucifera])

HSP 1 Score: 142.1 bits (357), Expect = 8.5e-31
Identity = 72/157 (45.86%), Postives = 107/157 (68.15%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL + +  I++MKTDGK+LEY++P RV QVL+DF+GH ISD +PV  HL    ++LSG 
Sbjct: 3   NCLVLSRDSIKVMKTDGKVLEYQAPLRVHQVLADFAGHAISDTLPVLRHLPPDTEMLSGR 62

Query: 65  LYFLIPTEAEEKKPKKAVRFAEPEKEIGGGVVRIKVVMTKKELQEMVERGGITAEEMICK 124
           LY+L+P       P  +   AEP +E   GVVRIK+V+TK+EL+EM+ +GG++ +EM+ +
Sbjct: 63  LYYLLP------PPLPSTNVAEPRRE--AGVVRIKLVITKQELREMLXKGGVSVDEMVSQ 122

Query: 125 IKSGSGEINCRELEGEDEESELQRWKPVLESIPESEV 162
           ++S   E+       +D+    + W+PVLESIPE E+
Sbjct: 123 LQSRQSEVGV----VDDDTECCKGWRPVLESIPEGEM 147

[Close]
BLAST of Lsi01G012200 vs. NCBI nr
Match: gi|225440876|ref|XP_002282533.1| (PREDICTED: uncharacterized protein LOC100254636 [Vitis vinifera])

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 73/157 (46.50%), Postives = 108/157 (68.79%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL   +K I+IM+ DGK+LEYK+P +V QVLS+FSG  ISD +PV  HL +  +++ G 
Sbjct: 3   NCLAQQEKIIKIMRPDGKVLEYKTPLKVQQVLSEFSGCAISDTLPVIQHLRKDMEMVGGQ 62

Query: 65  LYFLIPTEAEEKK-PKKAVRFAEPEKEI--GGGVVRIKVVMTKKELQEMVERGGITAEEM 124
           LY+LIP      +  KKA+RF++P+ E   G GVVRI++V+TK+EL+EM+ +GG++ + M
Sbjct: 63  LYYLIPVPLPSPEVEKKALRFSDPQVEADQGTGVVRIRLVITKQELKEMLRKGGVSVDHM 122

Query: 125 ICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPE 159
           + +++ G G     +L+  D     + WKPVLESIPE
Sbjct: 123 VSQLQRGQGRNGVHKLD-VDGNGNCRGWKPVLESIPE 158

[Close]
BLAST of Lsi01G012200 vs. NCBI nr
Match: gi|747093074|ref|XP_011094328.1| (PREDICTED: uncharacterized protein LOC105174061 [Sesamum indicum])

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-30
Identity = 76/161 (47.20%), Postives = 106/161 (65.84%), Query Frame = 1 

Query: 5   NCLFVDQKPIRIMKTDGKILEYKSPTRVFQVLSDFSGHQISDAVPVTHHLHRTAKLLSGH 64
           NCL +++K +++MKTDGKI+EYKSP +V QVLS+FS H ISD +PV  HLH  A++L GH
Sbjct: 3   NCLVIEEKTVKVMKTDGKIIEYKSPIKVHQVLSEFSHHAISDKLPVVKHLHPNAEMLGGH 62

Query: 65  LYFL----IPTEAEEKKPKKAVRFAEPEKE---IGGGVVRIKVVMTKKELQEMVERGGIT 124
           LY+L    +P  A   K KK VRF++   E       VVRIK+V++K+ELQ M+  GG++
Sbjct: 63  LYYLLPLPVPVPAPSPKKKKTVRFSDEVVEGARRAPEVVRIKLVISKQELQAMMGSGGVS 122

Query: 125 AEEMICKIKSGSGEINCRELEGEDEESELQRWKPVLESIPE 159
            E++I +++   G IN      + E  +  RW P LESIPE
Sbjct: 123 VEDVIAQVQR-EGSIN------KIESGDTDRWLPDLESIPE 156

The following BLAST results are available for this feature:
BLAST of Lsi01G012200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G012200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHH5_CUCSA8.8e-7586.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452650 PE=4 SV=1[more]
F6HKL5_VITVI1.0e-3046.50Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03260 PE=4 SV=... [more]
A0A067KZP0_JATCU4.3e-2945.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06753 PE=4 SV=1[more]
A0A061ET98_THECC7.3e-2946.84Uncharacterized protein OS=Theobroma cacao GN=TCM_022601 PE=4 SV=1[more]
A0A0D2NS61_GOSRA9.5e-2944.03Uncharacterized protein OS=Gossypium raimondii GN=B456_002G239800 PE=4 SV=1[more]
BLAST of Lsi01G012200 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10120.11.3e-2436.31 unknown protein[more]
AT5G03890.12.6e-1735.96 unknown protein[more]
AT3G21680.14.5e-0635.11 unknown protein[more]
BLAST of Lsi01G012200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125222|ref|XP_008462573.1|4.3e-7586.21PREDICTED: uncharacterized protein LOC103500900 [Cucumis melo][more]
gi|778717509|ref|XP_004143322.2|1.3e-7486.63PREDICTED: uncharacterized protein LOC101213283 [Cucumis sativus][more]
gi|719974464|ref|XP_010245005.1|8.5e-3145.86PREDICTED: uncharacterized protein LOC104588679 [Nelumbo nucifera][more]
gi|225440876|ref|XP_002282533.1|1.5e-3046.50PREDICTED: uncharacterized protein LOC100254636 [Vitis vinifera][more]
gi|747093074|ref|XP_011094328.1|5.5e-3047.20PREDICTED: uncharacterized protein LOC105174061 [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025322DUF4228_plant
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G012200.1Lsi01G012200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..158
score: 9.0
NoneNo IPR availablePANTHERPTHR33148FAMILY NOT NAMEDcoord: 5..163
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G012200Csa6G452650Cucumber (Chinese Long) v2culsiB435
Lsi01G012200CSPI06G25500Wild cucumber (PI 183967)cpilsiB440
Lsi01G012200Cucsa.083390Cucumber (Gy14) v1cgylsiB087
Lsi01G012200CmaCh03G011560Cucurbita maxima (Rimu)cmalsiB597
Lsi01G012200CmaCh07G008510Cucurbita maxima (Rimu)cmalsiB786
Lsi01G012200CmoCh07G008830Cucurbita moschata (Rifu)cmolsiB774
Lsi01G012200CmoCh03G011460Cucurbita moschata (Rifu)cmolsiB582
Lsi01G012200Cla018399Watermelon (97103) v1lsiwmB152
Lsi01G012200MELO3C024547Melon (DHL92) v3.5.1lsimeB150
Lsi01G012200ClCG04G010060Watermelon (Charleston Gray)lsiwcgB142
Lsi01G012200MELO3C024547.2Melon (DHL92) v3.6.1lsimedB157
Lsi01G012200Cla97C04G076900Watermelon (97103) v2lsiwmbB140
Lsi01G012200Bhi03G001419Wax gourdlsiwgoB172
Lsi01G012200Cp4.1LG19g05080Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G012200Cp4.1LG10g03980Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G012200CsGy6G024950Cucumber (Gy14) v2cgyblsiB398
Lsi01G012200Carg10481Silver-seed gourdcarlsiB214
Lsi01G012200Carg05363Silver-seed gourdcarlsiB742
Lsi01G012200CsaV3_6G040690Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G012200Cucumber (Chinese Long) v3cuclsiB021
Lsi01G012200Cucumber (Chinese Long) v3cuclsiB185
Lsi01G012200Cucumber (Chinese Long) v3cuclsiB463
Lsi01G012200Watermelon (97103) v2lsiwmbB114
Lsi01G012200Watermelon (97103) v2lsiwmbB116
Lsi01G012200Watermelon (97103) v2lsiwmbB124
Lsi01G012200Wax gourdlsiwgoB152
Lsi01G012200Wax gourdlsiwgoB161
Lsi01G012200Bottle gourd (USVL1VR-Ls)lsilsiB025
Lsi01G012200Bottle gourd (USVL1VR-Ls)lsilsiB070
Lsi01G012200Cucumber (Gy14) v1cgylsiB398
Lsi01G012200Cucurbita maxima (Rimu)cmalsiB230
Lsi01G012200Cucurbita maxima (Rimu)cmalsiB564
Lsi01G012200Cucurbita maxima (Rimu)cmalsiB747
Lsi01G012200Cucurbita moschata (Rifu)cmolsiB218
Lsi01G012200Cucurbita moschata (Rifu)cmolsiB546
Lsi01G012200Cucurbita moschata (Rifu)cmolsiB740
Lsi01G012200Cucurbita pepo (Zucchini)cpelsiB491
Lsi01G012200Cucurbita pepo (Zucchini)cpelsiB701
Lsi01G012200Wild cucumber (PI 183967)cpilsiB020
Lsi01G012200Wild cucumber (PI 183967)cpilsiB169
Lsi01G012200Cucumber (Chinese Long) v2culsiB021
Lsi01G012200Cucumber (Chinese Long) v2culsiB170
Lsi01G012200Melon (DHL92) v3.5.1lsimeB140
Lsi01G012200Watermelon (Charleston Gray)lsiwcgB118
Lsi01G012200Watermelon (Charleston Gray)lsiwcgB130
Lsi01G012200Watermelon (97103) v1lsiwmB127
Lsi01G012200Watermelon (97103) v1lsiwmB161
Lsi01G012200Cucumber (Gy14) v2cgyblsiB017
Lsi01G012200Cucumber (Gy14) v2cgyblsiB153
Lsi01G012200Cucumber (Gy14) v2cgyblsiB399
Lsi01G012200Melon (DHL92) v3.6.1lsimedB133
Lsi01G012200Melon (DHL92) v3.6.1lsimedB146
Lsi01G012200Silver-seed gourdcarlsiB134
Lsi01G012200Silver-seed gourdcarlsiB223