Lsi01G010840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G010840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	BnaCnng48510D protein
Location	chr01 : 8985477 .. 8985944 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACCGACCGACCCGGGTTTTCATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCGGGTTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCTGTCTCATTCAACTACATTTGTTCCTATAATTCATAGCCTAACAGAACGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGTGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGGTCATTTGACGGAAATGGAAGGCTTTTCCCCTATTAGAAAAGGCTCTATGAAGTAAAGGGAAGTGCATCAATTCTTGGAAAAAGAGGGAGCGAGCCTATAGAAAAAATCTAA

mRNA sequence

ATGGAGGACCGACCGACCCGGGTTTTCATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCGGGTTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCTGTCTCATTCAACTACATTTGTTCCTATAATTCATAGCCTAACAGAACGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGTGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGAAAAGGCTCTATGAAGTAAAGGGAAGTGCATCAATTCTTGGAAAAAGAGGGAGCGAGCCTATAGAAAAAATCTAA

Coding sequence (CDS)

ATGGAGGACCGACCGACCCGGGTTTTCATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCGGGTTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCTGTCTCATTCAACTACATTTGTTCCTATAATTCATAGCCTAACAGAACGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGTGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGAAAAGGCTCTATGAAGTAAAGGGAAGTGCATCAATTCTTGGAAAAAGAGGGAGCGAGCCTATAGAAAAAATCTAA

Protein sequence

MEDRPTRVFMSVGGSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHSLTERSSEGQPAHTASGEDGTTGKDRLAKTPQARSVKRLYEVKGSASILGKRGSEPIEKI

Homology

[Close]

BLAST of Lsi01G010840 vs. TrEMBL
Match: V9P5B5_SALMI (Uncharacterized protein OS=Salvia miltiorrhiza GN=orf103b PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1  MEDRPTRVFMSVGGSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHSL 60
          MEDRPTRV  ++ GS    +G    PG+IITTCT HLGTVERVTRLL HSTTFVP+IHSL
Sbjct: 1  MEDRPTRVSRALAGSGVPVKGASAYPGVIITTCTLHLGTVERVTRLLFHSTTFVPVIHSL 60

Query: 61 TERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV 95
          TERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV
Sbjct: 61 TERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV 94

[Close]

BLAST of Lsi01G010840 vs. TrEMBL
Match: A0A0J8BHU9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022400 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 70/95 (73.68%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1   MEDRPTRVFM-SVGGSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHS 60
           +EDRP   F  ++ G     +G    P +IITTCTSHLGTVERVTRLLSH T FVP+IHS
Sbjct: 10  IEDRPRPGFSRTLAGPGVPVKGASAYPRVIITTCTSHLGTVERVTRLLSHLTRFVPLIHS 69

Query: 61  LTERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV 95
           LTERSSEGQPAHTASGEDGTTGKDRLAKT QARSV
Sbjct: 70  LTERSSEGQPAHTASGEDGTTGKDRLAKTLQARSV 104

[Close]

BLAST of Lsi01G010840 vs. TrEMBL
Match: W9QM76_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007585 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.3e-27
Identity = 65/78 (83.33%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 14  GSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHSLTERSSEGQPAHTA 73
           G   + +G    PG+IITT TSHLGTVERVTRLLSHSTTFVP+IHSLTERSSEGQPAHTA
Sbjct: 99  GPGVSVKGASAYPGVIITTYTSHLGTVERVTRLLSHSTTFVPVIHSLTERSSEGQPAHTA 158

Query: 74  SGEDGTTGKDRLAKTPQA 92
           SGEDGTTGKDRLAKTPQA
Sbjct: 159 SGEDGTTGKDRLAKTPQA 176

[Close]

BLAST of Lsi01G010840 vs. TrEMBL
Match: K4DEB9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-22
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 20 QGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHSLTERSSEGQPAHTASGEDGT 79
          + L   PG+IITTCTSHL TVERVTR+L HSTTFVP+IHSL E SSEGQPA+ ASGED T
Sbjct: 22 RALAHNPGVIITTCTSHLDTVERVTRMLFHSTTFVPLIHSLEEHSSEGQPAYIASGEDDT 81

Query: 80 TGKDRLAKTPQARSV 95
          TGKD L KTPQA+SV
Sbjct: 82 TGKDCLEKTPQAQSV 96

[Close]

BLAST of Lsi01G010840 vs. TrEMBL
Match: A0A103YIR5_CYNCS (UDP-glucuronosyl/UDP-glucosyltransferase OS=Cynara cardunculus var. scolymus GN=Ccrd_011728 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 17   SACQGLPRIPGLIITTCTSHLGTVER-VTRLLSHSTTFVPIIHSLTERSSEGQPAHTASG 76
            S C+G+P    ++ + C      + R V  +            SLTERSSEGQPAH ASG
Sbjct: 1265 SICEGVP----MVCSPCFVDQPIIARYVCDVWKIGVLLKDDFESLTERSSEGQPAHIASG 1324

Query: 77   EDGTTGKDRLAKTPQARSV 95
            EDGTTGKDRLAKTPQARSV
Sbjct: 1325 EDGTTGKDRLAKTPQARSV 1339

[Close]

BLAST of Lsi01G010840 vs. NCBI nr
Match: gi|570700012|ref|YP_008992385.1| (hypothetical protein Salmi_Mp140 (mitochondrion) [Salvia miltiorrhiza])

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-33
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1  MEDRPTRVFMSVGGSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHSL 60
          MEDRPTRV  ++ GS    +G    PG+IITTCT HLGTVERVTRLL HSTTFVP+IHSL
Sbjct: 1  MEDRPTRVSRALAGSGVPVKGASAYPGVIITTCTLHLGTVERVTRLLFHSTTFVPVIHSL 60

Query: 61 TERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV 95
          TERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV
Sbjct: 61 TERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV 94

[Close]

BLAST of Lsi01G010840 vs. NCBI nr
Match: gi|870847185|gb|KMS99593.1| (hypothetical protein BVRB_1g022400 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-27
Identity = 70/95 (73.68%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1   MEDRPTRVFM-SVGGSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHS 60
           +EDRP   F  ++ G     +G    P +IITTCTSHLGTVERVTRLLSH T FVP+IHS
Sbjct: 10  IEDRPRPGFSRTLAGPGVPVKGASAYPRVIITTCTSHLGTVERVTRLLSHLTRFVPLIHS 69

Query: 61  LTERSSEGQPAHTASGEDGTTGKDRLAKTPQARSV 95
           LTERSSEGQPAHTASGEDGTTGKDRLAKT QARSV
Sbjct: 70  LTERSSEGQPAHTASGEDGTTGKDRLAKTLQARSV 104

[Close]

BLAST of Lsi01G010840 vs. NCBI nr
Match: gi|703078659|ref|XP_010090950.1| (hypothetical protein L484_007585 [Morus notabilis])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 65/78 (83.33%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 14  GSWSACQGLPRIPGLIITTCTSHLGTVERVTRLLSHSTTFVPIIHSLTERSSEGQPAHTA 73
           G   + +G    PG+IITT TSHLGTVERVTRLLSHSTTFVP+IHSLTERSSEGQPAHTA
Sbjct: 99  GPGVSVKGASAYPGVIITTYTSHLGTVERVTRLLSHSTTFVPVIHSLTERSSEGQPAHTA 158

Query: 74  SGEDGTTGKDRLAKTPQA 92
           SGEDGTTGKDRLAKTPQA
Sbjct: 159 SGEDGTTGKDRLAKTPQA 176

[Close]

BLAST of Lsi01G010840 vs. NCBI nr
Match: gi|976925995|gb|KVI09874.1| (UDP-glucuronosyl/UDP-glucosyltransferase [Cynara cardunculus var. scolymus])

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 17   SACQGLPRIPGLIITTCTSHLGTVER-VTRLLSHSTTFVPIIHSLTERSSEGQPAHTASG 76
            S C+G+P    ++ + C      + R V  +            SLTERSSEGQPAH ASG
Sbjct: 1265 SICEGVP----MVCSPCFVDQPIIARYVCDVWKIGVLLKDDFESLTERSSEGQPAHIASG 1324

Query: 77   EDGTTGKDRLAKTPQARSV 95
            EDGTTGKDRLAKTPQARSV
Sbjct: 1325 EDGTTGKDRLAKTPQARSV 1339

The following BLAST results are available for this feature:

BLAST of Lsi01G010840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G010840 vs. TrEMBL


Match Name	E-value	Identity	Description
V9P5B5_SALMI	1.2e-33	80.85	Uncharacterized protein OS=Salvia miltiorrhiza GN=orf103b PE=4 SV=1	[more]
A0A0J8BHU9_BETVU	1.3e-27	73.68	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022400 PE=4 S...	[more]
W9QM76_9ROSA	8.3e-27	83.33	Uncharacterized protein OS=Morus notabilis GN=L484_007585 PE=4 SV=1	[more]
K4DEB9_SOLLC	8.1e-22	76.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A103YIR5_CYNCS	4.6e-09	53.16	UDP-glucuronosyl/UDP-glucosyltransferase OS=Cynara cardunculus var. scolymus GN=...	[more]

BLAST of Lsi01G010840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G010840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|570700012\|ref\|YP_008992385.1\|	1.7e-33	80.85	hypothetical protein Salmi_Mp140 (mitochondrion) [Salvia miltiorrhiza]	[more]
gi\|870847185\|gb\|KMS99593.1\|	1.8e-27	73.68	hypothetical protein BVRB_1g022400 [Beta vulgaris subsp. vulgaris]	[more]
gi\|703078659\|ref\|XP_010090950.1\|	1.2e-26	83.33	hypothetical protein L484_007585 [Morus notabilis]	[more]
gi\|976925995\|gb\|KVI09874.1\|	6.6e-09	53.16	UDP-glucuronosyl/UDP-glucosyltransferase [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G010840.1	Lsi01G010840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G010840	CsaV3_UNG208490	Cucumber (Chinese Long) v3	cuclsiB159
Lsi01G010840	CsaV3_6G024140	Cucumber (Chinese Long) v3	cuclsiB461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G010840	Cucumber (Gy14) v1	cgylsiB125
Lsi01G010840	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G010840	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G010840	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G010840	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G010840	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G010840	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G010840	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G010840	Cucumber (Chinese Long) v2	culsiB434
Lsi01G010840	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G010840	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G010840	Watermelon (97103) v1	lsiwmB142
Lsi01G010840	Cucumber (Gy14) v2	cgyblsiB096
Lsi01G010840	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G010840	Melon (DHL92) v3.6.1	lsimedB134
Lsi01G010840	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G010840	Silver-seed gourd	carlsiB364
Lsi01G010840	Silver-seed gourd	carlsiB742
Lsi01G010840	Cucumber (Chinese Long) v3	cuclsiB116
Lsi01G010840	Cucumber (Chinese Long) v3	cuclsiB462
Lsi01G010840	Watermelon (97103) v2	lsiwmbB115
Lsi01G010840	Watermelon (97103) v2	lsiwmbB126
Lsi01G010840	Wax gourd	lsiwgoB162
Lsi01G010840	Wax gourd	lsiwgoB183