Lsi01G004820 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004820
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 4009199 .. 4009983 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGACCCTACGGACTACCGTGAGGGTGAAGGGTTAACGCAGTTTGTGTATGGGTCTTACGTGGCAGAATCGCGTCTGGGAGTTTACGACAATAGTCAGCATACAGCTGTAACTTTAGCGGTGAAACTAACACGTGTTAGTTTACTGATCCGCCGTACCCGATCCCAGCCCTCCTTTCGTTTATGTACTGCTCCCCGGGTTTTTAGTTTTAATTTTTTCAAGGCGAGAGGCATGCACACGTGCCGAAGAGTAGCAATGCACACGTGCCTGACGGCGGAAGGAATTTTCCACTGGATAAGTGGGTAGCCGTGGTCCTCAAATGGCTCGTTTACCACCGGCATGGAGTCCGGTAAAAAAAATTTCATATCGAGGAATTAATATTTGTGAATATGGACAAAAATATGGGTACAAATAGAAATTTCCAAAAAACAGAAAAAAAAAGGTTAAAATTTTTACCACTTGCTTAGGGGAGATCAAAAGAGACATTGCTGTCAATTATTTGCAAATTGCAAGGCTACTAGTGATACTAAATACACGTGTGGAGTCGACAGAAATGGCTTAGAAACATCTTATTTATTCAACTTTGTTTAGAAAATGGAGATAACTAAATTTAAGGGAAAAAAGTTGTCTGGATGTGACTTTAGATAAATTAAAATAGATTTATATAAGCATTGTATATTTTAATATTTTTGTAATAGTGCTTGATTTTTTTTTTTTTTTTTTTAATGTTACTTAGGAACGATAGAACAGATTTTTACAATGCGGCAAACTGCATAGTGAAAATG

mRNA sequence

CAAGACCCTACGGACTACCGTGAGGGTGAAGGGTTAACGCAGTTTGTGTATGGGTCTTACGTGGCAGAATCGCGTCTGGGAGTTTACGACAATAGTCAGCATACAGCTGTAACTTTAGCGGTGAAACTAACACGTGTTAGTTTACTGATCCGCCGTACCCGATCCCAGCCCTCCTTTCGCGAGAGGCATGCACACGTGCCGAAGAGTAGCAATGCACACGTGCCTGACGGCGGAAGGAATTTTCCACTGGATAAGTGGGTAGCCGTGGTCCTCAAATGGCTCGTTTACCACCGGCATGGAGTCCGGAACGATAGAACAGATTTTTACAATGCGGCAAACTGCATAGTGAAAATG

Coding sequence (CDS)

CAAGACCCTACGGACTACCGTGAGGGTGAAGGGTTAACGCAGTTTGTGTATGGGTCTTACGTGGCAGAATCGCGTCTGGGAGTTTACGACAATAGTCAGCATACAGCTGTAACTTTAGCGGTGAAACTAACACGTGTTAGTTTACTGATCCGCCGTACCCGATCCCAGCCCTCCTTTCGCGAGAGGCATGCACACGTGCCGAAGAGTAGCAATGCACACGTGCCTGACGGCGGAAGGAATTTTCCACTGGATAAGTGGGTAGCCGTGGTCCTCAAATGGCTCGTTTACCACCGGCATGGAGTCCGGAACGATAGAACAGATTTTTACAATGCGGCAAACTGCATAGTGAAAATG

Protein sequence

QDPTDYREGEGLTQFVYGSYVAESRLGVYDNSQHTAVTLAVKLTRVSLLIRRTRSQPSFRERHAHVPKSSNAHVPDGGRNFPLDKWVAVVLKWLVYHRHGVRNDRTDFYNAANCIVKM
Homology
[Close]
BLAST of Lsi01G004820 vs. TrEMBL
Match: A0A0A0KHQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511680 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 47/73 (64.38%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 18 GSYVAESRLGVYDNSQHTAVTLAVKLTRVSLLIRRTRSQP------SFRERHAHVPKSSN 77
          GSYVAESRLGVYDNSQ TAVTLAVKLTRV     R+   P          +HAHVP S +
Sbjct: 2  GSYVAESRLGVYDNSQRTAVTLAVKLTRV-----RSSDTPYPILPLLLGSKHAHVPMSGD 61

Query: 78 AHVPDGGRNFPLD 85
          AHVPDG RNFP D
Sbjct: 62 AHVPDGARNFPSD 69

[Close]
BLAST of Lsi01G004820 vs. NCBI nr
Match: gi|700193849|gb|KGN49053.1| (hypothetical protein Csa_6G511680 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 47/73 (64.38%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 18 GSYVAESRLGVYDNSQHTAVTLAVKLTRVSLLIRRTRSQP------SFRERHAHVPKSSN 77
          GSYVAESRLGVYDNSQ TAVTLAVKLTRV     R+   P          +HAHVP S +
Sbjct: 2  GSYVAESRLGVYDNSQRTAVTLAVKLTRV-----RSSDTPYPILPLLLGSKHAHVPMSGD 61

Query: 78 AHVPDGGRNFPLD 85
          AHVPDG RNFP D
Sbjct: 62 AHVPDGARNFPSD 69

The following BLAST results are available for this feature:
BLAST of Lsi01G004820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G004820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHQ3_CUCSA1.1e-1364.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511680 PE=4 SV=1[more]
BLAST of Lsi01G004820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G004820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193849|gb|KGN49053.1|1.5e-1364.38hypothetical protein Csa_6G511680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004820.1Lsi01G004820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G004820Csa6G511680Cucumber (Chinese Long) v2culsiB434
Lsi01G004820ClCG01G021430Watermelon (Charleston Gray)lsiwcgB127
Lsi01G004820Cla97C01G021000Watermelon (97103) v2lsiwmbB115
Lsi01G004820CsaV3_6G048450Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G004820Bottle gourd (USVL1VR-Ls)lsilsiB064
Lsi01G004820Cucumber (Gy14) v1cgylsiB022
Lsi01G004820Cucurbita maxima (Rimu)cmalsiB367
Lsi01G004820Cucurbita maxima (Rimu)cmalsiB597
Lsi01G004820Cucurbita maxima (Rimu)cmalsiB786
Lsi01G004820Cucurbita moschata (Rifu)cmolsiB582
Lsi01G004820Cucurbita moschata (Rifu)cmolsiB774
Lsi01G004820Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G004820Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G004820Cucurbita pepo (Zucchini)cpelsiB413
Lsi01G004820Wild cucumber (PI 183967)cpilsiB019
Lsi01G004820Wild cucumber (PI 183967)cpilsiB439
Lsi01G004820Cucumber (Chinese Long) v2culsiB020
Lsi01G004820Melon (DHL92) v3.5.1lsimeB129
Lsi01G004820Melon (DHL92) v3.5.1lsimeB149
Lsi01G004820Watermelon (97103) v1lsiwmB144
Lsi01G004820Cucumber (Gy14) v2cgyblsiB014
Lsi01G004820Cucumber (Gy14) v2cgyblsiB016
Lsi01G004820Cucumber (Gy14) v2cgyblsiB398
Lsi01G004820Melon (DHL92) v3.6.1lsimedB156
Lsi01G004820Silver-seed gourdcarlsiB364
Lsi01G004820Silver-seed gourdcarlsiB585
Lsi01G004820Cucumber (Chinese Long) v3cuclsiB017
Lsi01G004820Watermelon (97103) v2lsiwmbB112
Lsi01G004820Wax gourdlsiwgoB168