CsaV3_6G048450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048450
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 28408524 .. 28408838 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCTTACGTGGCAGAATCGCGTCTGGGAGTTTACGACAATAGTCAGCGTACAGCTGTAACCTTAGCTGTGAAACTAACACGTGTTCGTTCTTCCGATACGCCCTACCCGATCCTTCCACTCCTCCTCGGTTTTTTTATTTTTTATTTTTAAGGCTCGAAGCATGCACACGTGCCGATGAGTGGCGATGCACACGTGCCCGACGGCGCAAGGAATTTTCCATCGGATAACGAGAACCCTTTTTTACTCTTTACTTCTCACTTCTCAAATCAAACACCTCCTTTTACCCCACCGCCATTCTTTAAGGGGTAA

mRNA sequence

ATGGGGTCTTACGTGGCAGAATCGCGTCTGGGAGTTTACGACAATAGTCAGCGTACAGCTGTAACCTTAGCTGTGAAACTAACACGTGTTCGTTCTTCCGATACGCCCTACCCGATCCTTCCACTCCTCCTCGGCTCGAAGCATGCACACGTGCCGATGAGTGGCGATGCACACGTGCCCGACGGCGCAAGGAATTTTCCATCGGATAACGAGAACCCTTTTTTACTCTTTACTTCTCACTTCTCAAATCAAACACCTCCTTTTACCCCACCGCCATTCTTTAAGGGGTAA

Coding sequence (CDS)

ATGGGGTCTTACGTGGCAGAATCGCGTCTGGGAGTTTACGACAATAGTCAGCGTACAGCTGTAACCTTAGCTGTGAAACTAACACGTGTTCGTTCTTCCGATACGCCCTACCCGATCCTTCCACTCCTCCTCGGCTCGAAGCATGCACACGTGCCGATGAGTGGCGATGCACACGTGCCCGACGGCGCAAGGAATTTTCCATCGGATAACGAGAACCCTTTTTTACTCTTTACTTCTCACTTCTCAAATCAAACACCTCCTTTTACCCCACCGCCATTCTTTAAGGGGTAA

Protein sequence

MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVPDGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG
Homology
[Close]
BLAST of CsaV3_6G048450 vs. NCBI nr
Match: KGN49053.1 (hypothetical protein Csa_6G511680 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVP 60
          MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVP
Sbjct: 1  MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVP 60

Query: 61 DGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG 97
          DGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG
Sbjct: 61 DGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG 96

[Close]
BLAST of CsaV3_6G048450 vs. TrEMBL
Match: tr|A0A0A0KHQ3|A0A0A0KHQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511680 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVP 60
          MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVP
Sbjct: 1  MGSYVAESRLGVYDNSQRTAVTLAVKLTRVRSSDTPYPILPLLLGSKHAHVPMSGDAHVP 60

Query: 61 DGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG 97
          DGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG
Sbjct: 61 DGARNFPSDNENPFLLFTSHFSNQTPPFTPPPFFKG 96

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49053.13.9e-48100.00hypothetical protein Csa_6G511680 [Cucumis sativus][more]
BLAST of CsaV3_6G048450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHQ3|A0A0A0KHQ3_CUCSA2.6e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048450.1CsaV3_6G048450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G048450ClCG01G021430Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G048450Lsi01G004820Bottle gourd (USVL1VR-Ls)cuclsiB462
CsaV3_6G048450Cla97C01G021000Watermelon (97103) v2cucwmbB430
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G048450Cucumber (Chinese Long) v3cuccucB053
CsaV3_6G048450Silver-seed gourdcarcucB0442
CsaV3_6G048450Silver-seed gourdcarcucB0674
CsaV3_6G048450Cucumber (Gy14) v2cgybcucB046
CsaV3_6G048450Cucumber (Gy14) v2cgybcucB298
CsaV3_6G048450Cucumber (Gy14) v1cgycucB028
CsaV3_6G048450Cucurbita maxima (Rimu)cmacucB0509
CsaV3_6G048450Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G048450Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G048450Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G048450Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G048450Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G048450Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G048450Cucurbita pepo (Zucchini)cpecucB0654
CsaV3_6G048450Wild cucumber (PI 183967)cpicucB052
CsaV3_6G048450Wild cucumber (PI 183967)cpicucB363
CsaV3_6G048450Bottle gourd (USVL1VR-Ls)cuclsiB470
CsaV3_6G048450Melon (DHL92) v3.5.1cucmeB520
CsaV3_6G048450Melon (DHL92) v3.6.1cucmedB508
CsaV3_6G048450Watermelon (97103) v1cucwmB526
CsaV3_6G048450Watermelon (97103) v2cucwmbB432
CsaV3_6G048450Wax gourdcucwgoB648