Lsi01G004370 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004370
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHydantoin utilization protein B
Locationchr01 : 3664982 .. 3665438 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACATACCAAAAGCTCCTATTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACACATTATACGCAATGGGCCTTGAAAACCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGTGCGCAGTGGACGTGGATTGGGGAGACTCCCATTTGAGTAGCGTAAAAGTAAGCTGTAAGCAGCCGTAAACAGAAGATTAATATTTGCGATTTCCATTCCACAGACGCGAACAAATTGGGGAGAAAAAGGAAGTGTGGGCGTCAGAATTGGTGCTCGGCCTCTATGGGCACAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGCCAGAAGCAGGGGAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTAGACTTG

mRNA sequence

GAAACATACCAAAAGCTCCTATTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACACATTATACGCAATGGGCCTTGAAAACCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGTGCGCAGTGGACGTGGATTGGGGAGACTCCCATTTGAGTAGCGTAAAAACGCGAACAAATTGGGGAGAAAAAGGAAGTGTGGGCGTCAGAATTGGTGCTCGGCCTCTATGGGCACAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGCCAGAAGCAGGGGAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTAGACTTG

Coding sequence (CDS)

ATGGGCCTTGAAAACCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGTGCGCAGTGGACGTGGATTGGGGAGACTCCCATTTGAGTAGCGTAAAAACGCGAACAAATTGGGGAGAAAAAGGAAGTGTGGGCGTCAGAATTGGTGCTCGGCCTCTATGGGCACAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGCCAGAAGCAGGGGAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTAGACTTG

Protein sequence

MGLENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKGSVGVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL
Homology
[Close]
BLAST of Lsi01G004370 vs. TrEMBL
Match: A0A0A0KN07_CUCSA (Hydantoin utilization protein B OS=Cucumis sativus GN=Csa_6G513650 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.9e-42
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   MGLENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKG 60
           M LENLD TVCSTRS CLGNSMSEFPRTVTRRSGM AV VDWGDSH SSVKTRTNW EK 
Sbjct: 25  MDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMSAVGVDWGDSHWSSVKTRTNWEEKE 84

Query: 61  SVGVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL 109
           +  VR+ ARPLWA+ GSNWRIFSET   QKQ NRSGILS+GIMAELDL
Sbjct: 85  NESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSGILSRGIMAELDL 132

[Close]
BLAST of Lsi01G004370 vs. NCBI nr
Match: gi|700193897|gb|KGN49101.1| (Hydantoin utilization protein B [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 7.0e-42
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   MGLENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKG 60
           M LENLD TVCSTRS CLGNSMSEFPRTVTRRSGM AV VDWGDSH SSVKTRTNW EK 
Sbjct: 25  MDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMSAVGVDWGDSHWSSVKTRTNWEEKE 84

Query: 61  SVGVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL 109
           +  VR+ ARPLWA+ GSNWRIFSET   QKQ NRSGILS+GIMAELDL
Sbjct: 85  NESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSGILSRGIMAELDL 132

The following BLAST results are available for this feature:
BLAST of Lsi01G004370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G004370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN07_CUCSA4.9e-4281.48Hydantoin utilization protein B OS=Cucumis sativus GN=Csa_6G513650 PE=4 SV=1[more]
BLAST of Lsi01G004370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193897|gb|KGN49101.1|7.0e-4281.48Hydantoin utilization protein B [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004370.1Lsi01G004370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G004370Csa6G513650Cucumber (Chinese Long) v2culsiB434
Lsi01G004370CSPI06G33460Wild cucumber (PI 183967)cpilsiB439
Lsi01G004370ClCG01G021880Watermelon (Charleston Gray)lsiwcgB127
Lsi01G004370CsGy6G033010Cucumber (Gy14) v2cgyblsiB398
Lsi01G004370CsaV3_6G048940Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G004370Bottle gourd (USVL1VR-Ls)lsilsiB033
Lsi01G004370Bottle gourd (USVL1VR-Ls)lsilsiB048
Lsi01G004370Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi01G004370Cucumber (Gy14) v1cgylsiB022
Lsi01G004370Cucumber (Gy14) v1cgylsiB093
Lsi01G004370Cucumber (Gy14) v1cgylsiB238
Lsi01G004370Cucurbita maxima (Rimu)cmalsiB199
Lsi01G004370Cucurbita maxima (Rimu)cmalsiB366
Lsi01G004370Cucurbita maxima (Rimu)cmalsiB477
Lsi01G004370Cucurbita maxima (Rimu)cmalsiB597
Lsi01G004370Cucurbita maxima (Rimu)cmalsiB786
Lsi01G004370Cucurbita moschata (Rifu)cmolsiB189
Lsi01G004370Cucurbita moschata (Rifu)cmolsiB354
Lsi01G004370Cucurbita moschata (Rifu)cmolsiB462
Lsi01G004370Cucurbita moschata (Rifu)cmolsiB582
Lsi01G004370Cucurbita moschata (Rifu)cmolsiB774
Lsi01G004370Cucurbita pepo (Zucchini)cpelsiB022
Lsi01G004370Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G004370Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G004370Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G004370Wild cucumber (PI 183967)cpilsiB018
Lsi01G004370Wild cucumber (PI 183967)cpilsiB110
Lsi01G004370Wild cucumber (PI 183967)cpilsiB516
Lsi01G004370Cucumber (Chinese Long) v2culsiB019
Lsi01G004370Cucumber (Chinese Long) v2culsiB112
Lsi01G004370Cucumber (Chinese Long) v2culsiB502
Lsi01G004370Melon (DHL92) v3.5.1lsimeB127
Lsi01G004370Melon (DHL92) v3.5.1lsimeB130
Lsi01G004370Melon (DHL92) v3.5.1lsimeB149
Lsi01G004370Watermelon (Charleston Gray)lsiwcgB128
Lsi01G004370Watermelon (Charleston Gray)lsiwcgB134
Lsi01G004370Watermelon (97103) v1lsiwmB137
Lsi01G004370Watermelon (97103) v1lsiwmB144
Lsi01G004370Watermelon (97103) v1lsiwmB163
Lsi01G004370Cucumber (Gy14) v2cgyblsiB015
Lsi01G004370Melon (DHL92) v3.6.1lsimedB138
Lsi01G004370Melon (DHL92) v3.6.1lsimedB156
Lsi01G004370Silver-seed gourdcarlsiB446
Lsi01G004370Silver-seed gourdcarlsiB585
Lsi01G004370Silver-seed gourdcarlsiB797
Lsi01G004370Silver-seed gourdcarlsiB846
Lsi01G004370Silver-seed gourdcarlsiB917
Lsi01G004370Cucumber (Chinese Long) v3cuclsiB020
Lsi01G004370Cucumber (Chinese Long) v3cuclsiB120
Lsi01G004370Watermelon (97103) v2lsiwmbB115
Lsi01G004370Watermelon (97103) v2lsiwmbB131
Lsi01G004370Wax gourdlsiwgoB167
Lsi01G004370Wax gourdlsiwgoB168
Lsi01G004370Wax gourdlsiwgoB193