CSPI06G33460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G33460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionHydantoin utilization protein B
LocationChr6 : 27809536 .. 27810050 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAAGCTCCTGTTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACATATTATACGCAATGGACCTTGAAAATCTCGACGAAACCGTGTGTTCGACACGCAGCCCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGATCAGGAATGAGCGCAGTGGGCGTGGATTGGGGAGACTCCCATTGGAGTAGCGTAAAAGTTAGCTGTAAGCAGCTGTAAACAGAAGCTTAATATTTGAAATTTCCATTCCATAGACGCGAACAAATTGGGAAGAAAAAGAAAATGAAAGCGTCAGAGTTCGTGCTCGGCCTCTATGGGCAAAGATGGGTTCGAATTGGAGAATATTCTCTGAAACTGAGCAATGGCAGAAGCAGAGGAACAGAAGTGGAATCCTAAGCAGAGGAATTATGGCGGAGTTGGACTTGTGGGAGGAAACCTTTCAAAAGCTGATCCGAATTCATTCAATTCTCTTGGATGATCATTCCTGA

mRNA sequence

ATGCCAAAAGCTCCTGTTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACATATTATACGCAATGGACCTTGAAAATCTCGACGAAACCGTGTGTTCGACACGCAGCCCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGATCAGGAATGAGCGCAGTGGGCGTGGATTGGGGAGACTCCCATTGGAGTAGCGTAAAAACGCGAACAAATTGGGAAGAAAAAGAAAATGAAAGCGTCAGAGTTCGTGCTCGGCCTCTATGGGCAAAGATGGGTTCGAATTGGAGAATATTCTCTGAAACTGAGCAATGGCAGAAGCAGAGGAACAGAAGTGGAATCCTAAGCAGAGGAATTATGGCGGAGTTGGACTTGTGGGAGGAAACCTTTCAAAAGCTGATCCGAATTCATTCAATTCTCTTGGATGATCATTCCTGA

Coding sequence (CDS)

ATGCCAAAAGCTCCTGTTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACATATTATACGCAATGGACCTTGAAAATCTCGACGAAACCGTGTGTTCGACACGCAGCCCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGATCAGGAATGAGCGCAGTGGGCGTGGATTGGGGAGACTCCCATTGGAGTAGCGTAAAAACGCGAACAAATTGGGAAGAAAAAGAAAATGAAAGCGTCAGAGTTCGTGCTCGGCCTCTATGGGCAAAGATGGGTTCGAATTGGAGAATATTCTCTGAAACTGAGCAATGGCAGAAGCAGAGGAACAGAAGTGGAATCCTAAGCAGAGGAATTATGGCGGAGTTGGACTTGTGGGAGGAAACCTTTCAAAAGCTGATCCGAATTCATTCAATTCTCTTGGATGATCATTCCTGA
Homology
[Close]
BLAST of CSPI06G33460 vs. TrEMBL
Match: A0A0A0KN07_CUCSA (Hydantoin utilization protein B OS=Cucumis sativus GN=Csa_6G513650 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.3e-83
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1 

Query: 1   MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60
           MPKAPVESEPHNSGCDFSSN LYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS
Sbjct: 1   MPKAPVESEPHNSGCDFSSNTLYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60

Query: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120
           AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG
Sbjct: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120

Query: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 153
           ILSRGIMAELDLWEETFQKLIRIHSILLDDHS
Sbjct: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 152

[Close]
BLAST of CSPI06G33460 vs. NCBI nr
Match: gi|700193897|gb|KGN49101.1| (Hydantoin utilization protein B [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 1.8e-83
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1 

Query: 1   MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60
           MPKAPVESEPHNSGCDFSSN LYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS
Sbjct: 1   MPKAPVESEPHNSGCDFSSNTLYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60

Query: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120
           AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG
Sbjct: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120

Query: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 153
           ILSRGIMAELDLWEETFQKLIRIHSILLDDHS
Sbjct: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 152

The following BLAST results are available for this feature:
BLAST of CSPI06G33460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G33460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN07_CUCSA1.3e-8399.34Hydantoin utilization protein B OS=Cucumis sativus GN=Csa_6G513650 PE=4 SV=1[more]
BLAST of CSPI06G33460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G33460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193897|gb|KGN49101.1|1.8e-8399.34Hydantoin utilization protein B [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G33460.1CSPI06G33460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G33460Csa6G513650Cucumber (Chinese Long) v2cpicuB313
CSPI06G33460ClCG01G021880Watermelon (Charleston Gray)cpiwcgB453
CSPI06G33460Lsi01G004370Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G33460CsaV3_6G048940Cucumber (Chinese Long) v3cpicucB363
CSPI06G33460CmaCh07G003150Cucurbita maxima (Rimu)cmacpiB893
CSPI06G33460Cp4.1LG19g07960Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G33460CsGy6G033010Cucumber (Gy14) v2cgybcpiB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G33460Cucurbita moschata (Rifu)cmocpiB218
CSPI06G33460Cucurbita moschata (Rifu)cmocpiB418
CSPI06G33460Cucurbita moschata (Rifu)cmocpiB517
CSPI06G33460Cucurbita moschata (Rifu)cmocpiB634
CSPI06G33460Cucurbita moschata (Rifu)cmocpiB681
CSPI06G33460Cucurbita moschata (Rifu)cmocpiB873
CSPI06G33460Cucumber (Chinese Long) v2cpicuB261
CSPI06G33460Cucumber (Chinese Long) v2cpicuB272
CSPI06G33460Cucumber (Chinese Long) v2cpicuB319
CSPI06G33460Melon (DHL92) v3.5.1cpimeB445
CSPI06G33460Melon (DHL92) v3.5.1cpimeB453
CSPI06G33460Melon (DHL92) v3.5.1cpimeB462
CSPI06G33460Melon (DHL92) v3.5.1cpimeB512
CSPI06G33460Watermelon (Charleston Gray)cpiwcgB478
CSPI06G33460Watermelon (Charleston Gray)cpiwcgB481
CSPI06G33460Watermelon (Charleston Gray)cpiwcgB482
CSPI06G33460Watermelon (97103) v1cpiwmB492
CSPI06G33460Watermelon (97103) v1cpiwmB541
CSPI06G33460Watermelon (97103) v1cpiwmB543
CSPI06G33460Cucurbita pepo (Zucchini)cpecpiB047
CSPI06G33460Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G33460Cucurbita pepo (Zucchini)cpecpiB527
CSPI06G33460Bottle gourd (USVL1VR-Ls)cpilsiB413
CSPI06G33460Bottle gourd (USVL1VR-Ls)cpilsiB430
CSPI06G33460Bottle gourd (USVL1VR-Ls)cpilsiB444
CSPI06G33460Melon (DHL92) v3.6.1cpimedB447
CSPI06G33460Melon (DHL92) v3.6.1cpimedB454
CSPI06G33460Melon (DHL92) v3.6.1cpimedB496
CSPI06G33460Cucumber (Gy14) v2cgybcpiB037
CSPI06G33460Cucumber (Gy14) v2cgybcpiB080
CSPI06G33460Cucumber (Gy14) v2cgybcpiB327
CSPI06G33460Silver-seed gourdcarcpiB0030
CSPI06G33460Silver-seed gourdcarcpiB0533
CSPI06G33460Silver-seed gourdcarcpiB0672
CSPI06G33460Silver-seed gourdcarcpiB0910
CSPI06G33460Silver-seed gourdcarcpiB0971
CSPI06G33460Silver-seed gourdcarcpiB1045
CSPI06G33460Cucumber (Chinese Long) v3cpicucB310
CSPI06G33460Cucumber (Chinese Long) v3cpicucB323
CSPI06G33460Cucumber (Chinese Long) v3cpicucB373
CSPI06G33460Watermelon (97103) v2cpiwmbB433
CSPI06G33460Watermelon (97103) v2cpiwmbB441
CSPI06G33460Watermelon (97103) v2cpiwmbB473
CSPI06G33460Wax gourdcpiwgoB575
CSPI06G33460Wax gourdcpiwgoB608
CSPI06G33460Wax gourdcpiwgoB634
CSPI06G33460Wax gourdcpiwgoB640
CSPI06G33460Wild cucumber (PI 183967)cpicpiB038
CSPI06G33460Wild cucumber (PI 183967)cpicpiB079
CSPI06G33460Wild cucumber (PI 183967)cpicpiB188
CSPI06G33460Watermelon (97103) v1cpiwmB519
CSPI06G33460Cucumber (Gy14) v1cgycpiB028
CSPI06G33460Cucumber (Gy14) v1cgycpiB068
CSPI06G33460Cucumber (Gy14) v1cgycpiB091
CSPI06G33460Cucumber (Gy14) v1cgycpiB219
CSPI06G33460Cucurbita maxima (Rimu)cmacpiB231
CSPI06G33460Cucurbita maxima (Rimu)cmacpiB427
CSPI06G33460Cucurbita maxima (Rimu)cmacpiB689