Lsi01G003530 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G003530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionF-box family protein
Locationchr01 : 3145528 .. 3147486 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTAAAGCGCGTGGGGTTTTTTAAATTTTATTTTTTACTGCTTTCTAATTTTTGAAAAGCGAGAAATCCCATCTTTTTTCACCAATATATAAAGACAGAATATCGACAATTTTAAAGCAACTCCGTAGTTTGCTGAGTTTCCATTTTAAGAGCAAAACCTTTCTTTGAAATTGAAACAGAAACAGAGTGATAGAAATATTCGAATCTCCGTAATCAGGTTCGTTTCGCTCCTGATTCAAATTTAGATTTCTTCCTTATTCGACACTTTCAATCTGCTTTTGGAAACTGTTATTAGAGCACACCTGCTTTGCTTTGCTTCGATCAGATTTTTGTTAGGGTTTTTTAACCTTTTTCAATCTCTTAATCTATGGATTCGGTTCTTTCTTTTTAGGATTTTATCAGTTCTAAATGATTGATTTTTGTTATTTTTCGCGCGTTGATACAGATAAACGAATAGATTTAATTTAATTCGAGATTTGAGAATTGACAATGGCGTTGGGAAAGAAGACCGGTTGTTTGAAATCGAAAAGCGTTGTCTCTGCTGCTGATAAAGGGCTTGATTTCGGAGTTGTGAGATATACGCGTGATTTAGGAAGGAAACGCGTTGTGATTTCTTGCAATGAGGAAGATTCGTCTATCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGTTGTCAGTCCGGCGGTGGACGCCAACAGGTCTCTGCTCGAGGCTTTGCCTCAGGAAATTCTGGTTAGTATCTCATACAGATTGAAATCGCTTCGATAAATGTATCTTTCATATTCGCATTCGTTCCCGTTTTCGATTATTGTTTCAGAATTGATTTTTCCCCCTTTCCTCTTTCCATCAGATTAGGGTTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAGTCCGCGTTTCGAAAACAATTAACGAAGCGGTAAATATCACTCGAATCTCATTATTTGTTTCCTTTCATTTGATTCAATGATTCTCATCGATTTAGGGTTTCAATTACATTTACAGACTTTGATTGCAAAAGAATGGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTACATTTCGCACCGCCGTTGAATTGGACGATTCCAGCGATTTCGACGAGATTGAAGCCCCAAATGCTCCTCCCACAAGACGATTCAGAACTCCATTAAACAGAAAGAAGCTCGCGGAGATATCCGTAGCCTTATTTTCCGAAGAAGATCAGTGGCCAAAGAAAAAGTTGGCCATTGAGACAGAGATGTGAATTAACAAACCCAGAAGGCTCTGTAAATACAACCTGTATTTATATTGTTGTAGAAACACGGTTGTGGTGGTAGGAAGAAAGACGTAGTTAGGGATCTGAAATCTCAGATCTTGGTTGAAGAAGAAGCTGTACATGTCAGAACATTCTCACTGACCAATTCTTCAAATCTTTCATTGAAGATGAAGATGGGGGGTGGGTTAGAAATGCATCTATTTTTTTTGTACAGGTATTACAGAGACAGACTGATAGGTAAATTCGTTTACAAGGGTAGCATTTTGATTTAGTCCCTTCGAAATTTTCATAAACAGTACATTGTAGTATGTACTATTGCTCTCATTCATTCTCTGTCTAATAAGAACGAGCCATATTTTCCTCGCAATTTTGTGTCACTATTTACAACATAATGTTCTGCCATCCATTTGTATTGCTTCTTACTATGATTCCATTTGAATAAATTTTCCATAATTGATGAATGGGATTTTGGGTTCTCTCCTTTTCTTTCCCTTTTTGGTGTGGTGTGTGATTGAATGATTTGTAACGTATGAGAAATTAAATGGGGAAACAGAATAGAAATTATCAGAAGCATCATCAACTTTGACAGCTGTTTCTTATGCTTTTTACTCGCTAAAAAGAGTTTGAAATTCCCAATTATATGTGGAAATGTTTCTGTACAAGCTGGACTGATGAACTGGCG

mRNA sequence

TTTCTAAAGCGCGTGGGGTTTTTTAAATTTTATTTTTTACTGCTTTCTAATTTTTGAAAAGCGAGAAATCCCATCTTTTTTCACCAATATATAAAGACAGAATATCGACAATTTTAAAGCAACTCCGTAGTTTGCTGAGTTTCCATTTTAAGAGCAAAACCTTTCTTTGAAATTGAAACAGAAACAGAGTGATAGAAATATTCGAATCTCCGTAATCAGATAAACGAATAGATTTAATTTAATTCGAGATTTGAGAATTGACAATGGCGTTGGGAAAGAAGACCGGTTGTTTGAAATCGAAAAGCGTTGTCTCTGCTGCTGATAAAGGGCTTGATTTCGGAGTTGTGAGATATACGCGTGATTTAGGAAGGAAACGCGTTGTGATTTCTTGCAATGAGGAAGATTCGTCTATCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGTTGTCAGTCCGGCGGTGGACGCCAACAGGTCTCTGCTCGAGGCTTTGCCTCAGGAAATTCTGATTAGGGTTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAGTCCGCGTTTCGAAAACAATTAACGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTACATTTCGCACCGCCGTTGAATTGGACGATTCCAGCGATTTCGACGAGATTGAAGCCCCAAATGCTCCTCCCACAAGACGATTCAGAACTCCATTAAACAGAAAGAAGCTCGCGGAGATATCCGTAGCCTTATTTTCCGAAGAAGATCAGTGGCCAAAGAAAAAGTTGGCCATTGAGACAGAGATGTGAATTAACAAACCCAGAAGGCTCTGTAAATACAACCTGTATTTATATTGTTGTAGAAACACGGTTGTGGTGGTAGGAAGAAAGACGTAGTTAGGGATCTGAAATCTCAGATCTTGGTTGAAGAAGAAGCTGTACATGTCAGAACATTCTCACTGACCAATTCTTCAAATCTTTCATTGAAGATGAAGATGGGGGGTGGGTTAGAAATGCATCTATTTTTTTTGTACAGGTATTACAGAGACAGACTGATAGGTAAATTCGTTTACAAGGGTAGCATTTTGATTTAGTCCCTTCGAAATTTTCATAAACAGTACATTGTAGTATGTACTATTGCTCTCATTCATTCTCTGTCTAATAAGAACGAGCCATATTTTCCTCGCAATTTTGTGTCACTATTTACAACATAATGTTCTGCCATCCATTTGTATTGCTTCTTACTATGATTCCATTTGAATAAATTTTCCATAATTGATGAATGGGATTTTGGGTTCTCTCCTTTTCTTTCCCTTTTTGGTGTGGTGTGTGATTGAATGATTTGTAACGTATGAGAAATTAAATGGGGAAACAGAATAGAAATTATCAGAAGCATCATCAACTTTGACAGCTGTTTCTTATGCTTTTTACTCGCTAAAAAGAGTTTGAAATTCCCAATTATATGTGGAAATGTTTCTGTACAAGCTGGACTGATGAACTGGCG

Coding sequence (CDS)

ATGGCGTTGGGAAAGAAGACCGGTTGTTTGAAATCGAAAAGCGTTGTCTCTGCTGCTGATAAAGGGCTTGATTTCGGAGTTGTGAGATATACGCGTGATTTAGGAAGGAAACGCGTTGTGATTTCTTGCAATGAGGAAGATTCGTCTATCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGTTGTCAGTCCGGCGGTGGACGCCAACAGGTCTCTGCTCGAGGCTTTGCCTCAGGAAATTCTGATTAGGGTTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAGTCCGCGTTTCGAAAACAATTAACGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTACATTTCGCACCGCCGTTGAATTGGACGATTCCAGCGATTTCGACGAGATTGAAGCCCCAAATGCTCCTCCCACAAGACGATTCAGAACTCCATTAAACAGAAAGAAGCTCGCGGAGATATCCGTAGCCTTATTTTCCGAAGAAGATCAGTGGCCAAAGAAAAAGTTGGCCATTGAGACAGAGATGTGA

Protein sequence

MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSKRRCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAYSTPSKVRTFRTAVELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISVALFSEEDQWPKKKLAIETEM
Homology
[Close]
BLAST of Lsi01G003530 vs. Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-29
Identity = 79/193 (40.93%), Postives = 120/193 (62.18%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGV--VRYTRDLGRKRVVIS-CNEEDSS-----IDL 60
           MAL K+   + S +     ++ L+ G+  VR+TR LGRKR++IS C  E  S     I +
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  TPKAP--------SKRRCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSK 120
             ++P         + R ++VS +  + +S LE LPQ++LIRV+CGV+H+DLK L  VSK
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSS-SSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSK 153

Query: 121 TINEATLIAKEWHFAYSTPSKVRTFRTAVELDDSSDF----DEIEAPNAPPTRRFRTPLN 174
           +I EA+L+AK  HFAY+TP K R FR +++L++ SD     D+IE PNAP   R+     
Sbjct: 154 SIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKR 213

[Close]
BLAST of Lsi01G003530 vs. Swiss-Prot
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 83/186 (44.62%), Postives = 109/186 (58.60%), Query Frame = 1 

Query: 1   MALGKKTGC-----LKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEE-DSSIDLTP 60
           MALGKK        L+ +  V     GL    V+Y R  GRKR++IS  +E + SI  +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KAPSKRRCSVVSPAVDANRSL-LEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIA 120
               K+ C   + +V   +S  LE LP +IL+R++CGVEH+DLKQL  VSKTI EAT+IA
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIA 120

Query: 121 KEWHFAYSTPSKVRTFRTA-----VELDDSSDFDEIEAPNAPPTRRFR-TPLNRKK-LAE 173
           K+ HFAYSTP K   F           D   D +EIEAP AP  +R+R + +NR K  + 
Sbjct: 121 KQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSG 180

[Close]
BLAST of Lsi01G003530 vs. Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 76/158 (48.10%), Postives = 94/158 (59.49%), Query Frame = 1 

Query: 23  LDFGVVRYTRDLGRKRVVIS--CNEEDSSIDLTPKAPSKRRCSVVSPAVDANRSLLEALP 82
           L  G VR+TR LGRKR++IS    E DS     P   +   C          RSLLE L 
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDSPPVKRPSHETTESC----------RSLLETLH 78

Query: 83  QEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAYSTPSKVRTFRTAVELDD--- 142
           Q+ILIRVLC V+H+DL  L RVSKTI +A + AK+ HF YSTP K   FR A+ + D   
Sbjct: 79  QDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNS 138

Query: 143 --SSDFDEIEAPNAPPTRRFRTPLNRKK-LAEISVALF 173
             SS  DE+E PNAP  RRF   +NR+  L++IS+ LF
Sbjct: 139 NSSSQDDEMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]
BLAST of Lsi01G003530 vs. Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.6e-10
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 1 

Query: 53  TPKAPSKRRCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLI 112
           TPK P    C         + S LE+LP ++L++++C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 113 AKEWHFAYSTPSKVR----TFRTAVELD------DSSDFDEIEAPNAPPT-RRFRTPLNR 172
           A+++HF Y+TP + R       T V ++         +   + +P+ P   +    P +R
Sbjct: 207 ARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSR 266

Query: 173 KKLAE---ISVALFSEEDQWPKK 182
            KLAE   I+  LF ++  +P +
Sbjct: 267 TKLAEMKQITAVLFQDQTPFPSR 281

[Close]
BLAST of Lsi01G003530 vs. TrEMBL
Match: A0A0A0KI01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516960 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.0e-87
Identity = 170/190 (89.47%), Postives = 179/190 (94.21%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTR LGRKRVVISC+EEDS  DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  RCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAY 120
           RC+VVS AV+ +RSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTINEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAVELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISVALFS-EEDQWP 180
           STPSKVR FRTA+ELDDSSDFDEIEAPNA PTRRFRTPLNRKKLAEIS+ALF+ EEDQWP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

Query: 181 KKKLAIETEM 190
           KKKL I TEM
Sbjct: 181 KKKLPIWTEM 190

[Close]
BLAST of Lsi01G003530 vs. TrEMBL
Match: A0A067JMY6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21355 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-43
Identity = 93/189 (49.21%), Postives = 134/189 (70.90%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALG++   +KS+      ++GL FG V+YTR  GRKR++IS +E+   +D   + P KR
Sbjct: 1   MALGRRCNSMKSRRTGIFGEEGLGFGFVKYTRSFGRKRILISNSEDFLPLDSPIQTPLKR 60

Query: 61  RCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAY 120
            C++     +  +S LE+LPQ+IL+++LCGV+HDDLKQL  VS  I EATL+AK+WHFAY
Sbjct: 61  HCNL-----EPEKSALESLPQDILVKILCGVDHDDLKQLFHVSTVIREATLVAKKWHFAY 120

Query: 121 STPSKVRTFRTAVELDDSSDFDEIEAPNAPPT-RRFRTPLNRKKLAEISVALFSEEDQWP 180
           STP K   FRT+++ ++ S+F++IEAPNAP   R +++ LN K LA+ISVALF+     P
Sbjct: 121 STPKKTPAFRTSIDFENPSEFEDIEAPNAPKVPRSYKSRLNGKNLADISVALFAS----P 180

Query: 181 KKKLAIETE 189
           +K+L +ETE
Sbjct: 181 RKELFLETE 180

[Close]
BLAST of Lsi01G003530 vs. TrEMBL
Match: A0A067GJZ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029717mg PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 102/193 (52.85%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPS-K 60
           MALG+    LKS+  V++  +GL  G VRYTR LGRKR++I+  EE SS D   K+ S K
Sbjct: 1   MALGQNCSSLKSRRGVASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RRCSVVSPAVDAN---RSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEW 120
           R+CS     +D N   +S LEALPQ+ILIR+LCGV H+DLKQL  VS+ I EATLIAK+W
Sbjct: 61  RQCS--EKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQW 120

Query: 121 HFAYSTPSKVRTFRTAVELDDSSDFDEIEAPNAP-PTRRFRTPLNRKKLAEISVALFSEE 180
           HFAY+TP K R F+T+++ +D  +  E+EAPNAP   R +++ L  +KLA+ISVALF+  
Sbjct: 121 HFAYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFAS- 180

Query: 181 DQWPKKKLAIETE 189
              PKK L +E E
Sbjct: 181 ---PKKNLFMEEE 187

[Close]
BLAST of Lsi01G003530 vs. TrEMBL
Match: V4U8Z6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016832mg PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPS-K 60
           MALG+    LKS+  V+   +GL  G VRYTR LGRKR++I+  EE SS D   K+ S K
Sbjct: 1   MALGQNCSSLKSRRGVAGTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RRCSVVSPAVDAN---RSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEW 120
           R+CS     +D N   +S LEALPQ+ILIR+LCGV H+DLKQL  VS+ I EATLIAK+W
Sbjct: 61  RQCS--EKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQW 120

Query: 121 HFAYSTPSKVRTFRTAVELDDSSDFDEIEAPNAP-PTRRFRTPLNRKKLAEISVALFSEE 180
           HFAY+TP K R F+T+++ +D  +  E+EAPNAP   R +++ L  +KLA+ISVALF+  
Sbjct: 121 HFAYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFAS- 180

Query: 181 DQWPKKKLAIETE 189
              PKK L +E E
Sbjct: 181 ---PKKNLFMEEE 187

[Close]
BLAST of Lsi01G003530 vs. TrEMBL
Match: M5X2P6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012223mg PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.0e-42
Identity = 107/182 (58.79%), Postives = 126/182 (69.23%), Query Frame = 1 

Query: 1   MALGKKT-GCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSK 60
           MALGKK   CLKSK     A++GL+ G V+YTR LGRKR+ IS N E S  D  P  P K
Sbjct: 1   MALGKKCKSCLKSKRGGLVAEEGLELGFVKYTRALGRKRIGISNNGEPSPTDSYPSTPLK 60

Query: 61  RRCS--VVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWH 120
           ++ S  +VS   D+  S LEALPQEILI+++CGV H+DLKQL  VSK I EATLIAK+WH
Sbjct: 61  KQRSGKLVS---DSETSALEALPQEILIKIVCGVHHEDLKQLFHVSKPIREATLIAKQWH 120

Query: 121 FAYSTPSKVRTFRTAVELDDSSDFDEIEAPNAPPTRR--FRTPLNRKKLAEISVALFSEE 178
           FAYSTPSK   FRTA++   S D DEIEAPNAP   R   R   +RKKLAEISV LF+  
Sbjct: 121 FAYSTPSKTPAFRTAIDF-SSDDMDEIEAPNAPKQWREQHRQLPSRKKLAEISVNLFASW 178

[Close]
BLAST of Lsi01G003530 vs. TAIR10
Match: AT4G21510.1 (AT4G21510.1 F-box family protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 79/193 (40.93%), Postives = 120/193 (62.18%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGV--VRYTRDLGRKRVVIS-CNEEDSS-----IDL 60
           MAL K+   + S +     ++ L+ G+  VR+TR LGRKR++IS C  E  S     I +
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  TPKAP--------SKRRCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSK 120
             ++P         + R ++VS +  + +S LE LPQ++LIRV+CGV+H+DLK L  VSK
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSS-SSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSK 153

Query: 121 TINEATLIAKEWHFAYSTPSKVRTFRTAVELDDSSDF----DEIEAPNAPPTRRFRTPLN 174
           +I EA+L+AK  HFAY+TP K R FR +++L++ SD     D+IE PNAP   R+     
Sbjct: 154 SIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKR 213

[Close]
BLAST of Lsi01G003530 vs. TAIR10
Match: AT4G05010.1 (AT4G05010.1 F-box family protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 76/158 (48.10%), Postives = 94/158 (59.49%), Query Frame = 1 

Query: 23  LDFGVVRYTRDLGRKRVVIS--CNEEDSSIDLTPKAPSKRRCSVVSPAVDANRSLLEALP 82
           L  G VR+TR LGRKR++IS    E DS     P   +   C          RSLLE L 
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDSPPVKRPSHETTESC----------RSLLETLH 78

Query: 83  QEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAYSTPSKVRTFRTAVELDD--- 142
           Q+ILIRVLC V+H+DL  L RVSKTI +A + AK+ HF YSTP K   FR A+ + D   
Sbjct: 79  QDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNS 138

Query: 143 --SSDFDEIEAPNAPPTRRFRTPLNRKK-LAEISVALF 173
             SS  DE+E PNAP  RRF   +NR+  L++IS+ LF
Sbjct: 139 NSSSQDDEMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]
BLAST of Lsi01G003530 vs. TAIR10
Match: AT1G61340.2 (AT1G61340.2 F-box family protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-18
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1 

Query: 83  ILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAYSTPSKVRTFRTA-----VELDD 142
           +++R++CGVEH+DLKQL  VSKTI EAT+IAK+ HFAYSTP K   F           D 
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDKPFDV 193

Query: 143 SSDFDEIEAPNAPPTRRFR-TPLNRKK-LAEISVALF 173
             D +EIEAP AP  +R+R + +NR K  + +SVALF
Sbjct: 194 EDDDEEIEAPGAPLQKRYRLSRINRNKDDSGVSVALF 230

[Close]
BLAST of Lsi01G003530 vs. TAIR10
Match: AT4G35930.1 (AT4G35930.1 F-box family protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-11
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 1 

Query: 53  TPKAPSKRRCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLI 112
           TPK P    C         + S LE+LP ++L++++C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 113 AKEWHFAYSTPSKVR----TFRTAVELD------DSSDFDEIEAPNAPPT-RRFRTPLNR 172
           A+++HF Y+TP + R       T V ++         +   + +P+ P   +    P +R
Sbjct: 207 ARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSR 266

Query: 173 KKLAE---ISVALFSEEDQWPKK 182
            KLAE   I+  LF ++  +P +
Sbjct: 267 TKLAEMKQITAVLFQDQTPFPSR 281

[Close]
BLAST of Lsi01G003530 vs. NCBI nr
Match: gi|659078787|ref|XP_008439907.1| (PREDICTED: F-box protein At4g05010-like [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 6.7e-88
Identity = 171/190 (90.00%), Postives = 182/190 (95.79%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTR LGRKRVVISCNEEDSSIDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAY 120
           RC+VVS AV+A+RSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAVELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISVALFS-EEDQWP 180
           STPSKVR FRTA+EL+DSSDFDEIEAPNA PTRRFR+PLNRKKLAEISVALF+ EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLAIETEM 190
           KKKL I TEM
Sbjct: 181 KKKLPIWTEM 190

[Close]
BLAST of Lsi01G003530 vs. NCBI nr
Match: gi|449433892|ref|XP_004134730.1| (PREDICTED: F-box protein At4g05010 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 4.3e-87
Identity = 170/190 (89.47%), Postives = 179/190 (94.21%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTR LGRKRVVISC+EEDS  DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  RCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAY 120
           RC+VVS AV+ +RSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTINEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAVELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISVALFS-EEDQWP 180
           STPSKVR FRTA+ELDDSSDFDEIEAPNA PTRRFRTPLNRKKLAEIS+ALF+ EEDQWP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

Query: 181 KKKLAIETEM 190
           KKKL I TEM
Sbjct: 181 KKKLPIWTEM 190

[Close]
BLAST of Lsi01G003530 vs. NCBI nr
Match: gi|802781626|ref|XP_012091491.1| (PREDICTED: F-box protein At1g61340 [Jatropha curcas])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 93/189 (49.21%), Postives = 134/189 (70.90%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALG++   +KS+      ++GL FG V+YTR  GRKR++IS +E+   +D   + P KR
Sbjct: 1   MALGRRCNSMKSRRTGIFGEEGLGFGFVKYTRSFGRKRILISNSEDFLPLDSPIQTPLKR 60

Query: 61  RCSVVSPAVDANRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEWHFAY 120
            C++     +  +S LE+LPQ+IL+++LCGV+HDDLKQL  VS  I EATL+AK+WHFAY
Sbjct: 61  HCNL-----EPEKSALESLPQDILVKILCGVDHDDLKQLFHVSTVIREATLVAKKWHFAY 120

Query: 121 STPSKVRTFRTAVELDDSSDFDEIEAPNAPPT-RRFRTPLNRKKLAEISVALFSEEDQWP 180
           STP K   FRT+++ ++ S+F++IEAPNAP   R +++ LN K LA+ISVALF+     P
Sbjct: 121 STPKKTPAFRTSIDFENPSEFEDIEAPNAPKVPRSYKSRLNGKNLADISVALFAS----P 180

Query: 181 KKKLAIETE 189
           +K+L +ETE
Sbjct: 181 RKELFLETE 180

[Close]
BLAST of Lsi01G003530 vs. NCBI nr
Match: gi|568827083|ref|XP_006467897.1| (PREDICTED: F-box protein At1g61340 [Citrus sinensis])

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42
Identity = 102/193 (52.85%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPS-K 60
           MALG+    LKS+  V++  +GL  G VRYTR LGRKR++I+  EE SS D   K+ S K
Sbjct: 1   MALGQNCSSLKSRRGVASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RRCSVVSPAVDAN---RSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEW 120
           R+CS     +D N   +S LEALPQ+ILIR+LCGV H+DLKQL  VS+ I EATLIAK+W
Sbjct: 61  RQCS--EKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQW 120

Query: 121 HFAYSTPSKVRTFRTAVELDDSSDFDEIEAPNAP-PTRRFRTPLNRKKLAEISVALFSEE 180
           HFAY+TP K R F+T+++ +D  +  E+EAPNAP   R +++ L  +KLA+ISVALF+  
Sbjct: 121 HFAYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFAS- 180

Query: 181 DQWPKKKLAIETE 189
              PKK L +E E
Sbjct: 181 ---PKKNLFMEEE 187

[Close]
BLAST of Lsi01G003530 vs. NCBI nr
Match: gi|567913797|ref|XP_006449212.1| (hypothetical protein CICLE_v10016832mg [Citrus clementina])

HSP 1 Score: 180.6 bits (457), Expect = 2.5e-42
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 1 

Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRDLGRKRVVISCNEEDSSIDLTPKAPS-K 60
           MALG+    LKS+  V+   +GL  G VRYTR LGRKR++I+  EE SS D   K+ S K
Sbjct: 1   MALGQNCSSLKSRRGVAGTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RRCSVVSPAVDAN---RSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTINEATLIAKEW 120
           R+CS     +D N   +S LEALPQ+ILIR+LCGV H+DLKQL  VS+ I EATLIAK+W
Sbjct: 61  RQCS--EKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQW 120

Query: 121 HFAYSTPSKVRTFRTAVELDDSSDFDEIEAPNAP-PTRRFRTPLNRKKLAEISVALFSEE 180
           HFAY+TP K R F+T+++ +D  +  E+EAPNAP   R +++ L  +KLA+ISVALF+  
Sbjct: 121 HFAYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFAS- 180

Query: 181 DQWPKKKLAIETE 189
              PKK L +E E
Sbjct: 181 ---PKKNLFMEEE 187

The following BLAST results are available for this feature:
BLAST of Lsi01G003530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKI27_ARATH2.4e-2940.93F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2[more]
FB316_ARATH1.5e-2644.62F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1[more]
FB220_ARATH3.0e-2448.10F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1[more]
FB248_ARATH5.6e-1029.37F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1[more]
BLAST of Lsi01G003530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI01_CUCSA3.0e-8789.47Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516960 PE=4 SV=1[more]
A0A067JMY6_JATCU1.6e-4349.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21355 PE=4 SV=1[more]
A0A067GJZ5_CITSI1.3e-4252.85Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029717mg PE=4 SV=1[more]
V4U8Z6_9ROSI1.7e-4252.85Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016832mg PE=4 SV=1[more]
M5X2P6_PRUPE3.0e-4258.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012223mg PE=4 SV=1[more]
BLAST of Lsi01G003530 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21510.11.4e-3040.93 F-box family protein[more]
AT4G05010.11.7e-2548.10 F-box family protein[more]
AT1G61340.21.6e-1851.55 F-box family protein[more]
AT4G35930.13.1e-1129.37 F-box family protein[more]
BLAST of Lsi01G003530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078787|ref|XP_008439907.1|6.7e-8890.00PREDICTED: F-box protein At4g05010-like [Cucumis melo][more]
gi|449433892|ref|XP_004134730.1|4.3e-8789.47PREDICTED: F-box protein At4g05010 [Cucumis sativus][more]
gi|802781626|ref|XP_012091491.1|2.2e-4349.21PREDICTED: F-box protein At1g61340 [Jatropha curcas][more]
gi|568827083|ref|XP_006467897.1|1.9e-4252.85PREDICTED: F-box protein At1g61340 [Citrus sinensis][more]
gi|567913797|ref|XP_006449212.1|2.5e-4252.85hypothetical protein CICLE_v10016832mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G003530.1Lsi01G003530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROFILEPS50181FBOXcoord: 73..123
score: 8
IPR001810F-box domainunknownSSF81383F-box domaincoord: 71..113
score: 6.6
NoneNo IPR availablePANTHERPTHR34049FAMILY NOT NAMEDcoord: 22..189
score: 8.1
NoneNo IPR availablePANTHERPTHR34049:SF1F-BOX PROTEIN SKIP27coord: 22..189
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G003530Csa6G516960Cucumber (Chinese Long) v2culsiB434
Lsi01G003530CSPI06G34240Wild cucumber (PI 183967)cpilsiB439
Lsi01G003530Cucsa.045880Cucumber (Gy14) v1cgylsiB022
Lsi01G003530CmaCh03G004910Cucurbita maxima (Rimu)cmalsiB597
Lsi01G003530CmaCh07G002750Cucurbita maxima (Rimu)cmalsiB786
Lsi01G003530CmoCh07G002660Cucurbita moschata (Rifu)cmolsiB774
Lsi01G003530CmoCh03G005100Cucurbita moschata (Rifu)cmolsiB582
Lsi01G003530Cla001349Watermelon (97103) v1lsiwmB144
Lsi01G003530MELO3C007321Melon (DHL92) v3.5.1lsimeB149
Lsi01G003530ClCG01G022560Watermelon (Charleston Gray)lsiwcgB127
Lsi01G003530MELO3C007321.2Melon (DHL92) v3.6.1lsimedB156
Lsi01G003530Cla97C01G022420Watermelon (97103) v2lsiwmbB115
Lsi01G003530Bhi03G000369Wax gourdlsiwgoB168
Lsi01G003530Cp4.1LG19g07350Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G003530Cp4.1LG10g09170Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G003530CsGy6G033860Cucumber (Gy14) v2cgyblsiB398
Lsi01G003530Carg07806Silver-seed gourdcarlsiB585
Lsi01G003530Carg13743Silver-seed gourdcarlsiB846
Lsi01G003530CsaV3_6G049750Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G003530Bottle gourd (USVL1VR-Ls)lsilsiB048
Lsi01G003530Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi01G003530Cucumber (Gy14) v1cgylsiB193
Lsi01G003530Cucumber (Gy14) v1cgylsiB238
Lsi01G003530Cucurbita maxima (Rimu)cmalsiB199
Lsi01G003530Cucurbita maxima (Rimu)cmalsiB368
Lsi01G003530Cucurbita maxima (Rimu)cmalsiB477
Lsi01G003530Cucurbita moschata (Rifu)cmolsiB189
Lsi01G003530Cucurbita moschata (Rifu)cmolsiB354
Lsi01G003530Cucurbita moschata (Rifu)cmolsiB462
Lsi01G003530Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G003530Wild cucumber (PI 183967)cpilsiB018
Lsi01G003530Wild cucumber (PI 183967)cpilsiB516
Lsi01G003530Cucumber (Chinese Long) v2culsiB019
Lsi01G003530Cucumber (Chinese Long) v2culsiB502
Lsi01G003530Melon (DHL92) v3.5.1lsimeB127
Lsi01G003530Melon (DHL92) v3.5.1lsimeB130
Lsi01G003530Watermelon (Charleston Gray)lsiwcgB128
Lsi01G003530Watermelon (Charleston Gray)lsiwcgB134
Lsi01G003530Watermelon (97103) v1lsiwmB137
Lsi01G003530Watermelon (97103) v1lsiwmB163
Lsi01G003530Cucumber (Gy14) v2cgyblsiB015
Lsi01G003530Melon (DHL92) v3.6.1lsimedB138
Lsi01G003530Silver-seed gourdcarlsiB030
Lsi01G003530Silver-seed gourdcarlsiB132
Lsi01G003530Silver-seed gourdcarlsiB797
Lsi01G003530Silver-seed gourdcarlsiB865
Lsi01G003530Cucumber (Chinese Long) v3cuclsiB020
Lsi01G003530Watermelon (97103) v2lsiwmbB131
Lsi01G003530Wax gourdlsiwgoB194