CmoCh07G002660 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G002660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein, putative
Location	Cmo_Chr07 : 1310861 .. 1311938 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGCATAGCAAAAGCTTTCTTTGAAATTGAAACAAAAACAGAGAGAGACTGAGAGAGATATTCGAATCTCCACGGCCATCCACAATCAGGTTCGTTTCGCTTCGGATTTAAATTTAGATTTCTTCCTTATTCGATACTTCCACCCTGCTTTTGGAAATTGTTCTCTGGAGAAGCTGTTTTGCTTTTATCAGATTTTTGTTAGGGTTCTCGAACCTCTGTGAATCTTTTAATCTATGGATTCGGTTCCATTTGGTTAGGATTTTATCAGTTCTTAATGATTGATATTGATTTTCTTTTGCTCGTTGATACAGATAACCGAATACGTTTAGTTTAATTCGATATTGGGAATTGAAAATGGCGTTGGGAAAGAAGAGCGGTTGTTTAAAATCGAAAAGCGTCGTCTCTGCTGCCGATAATGGACTGGATTTCGGAATTGTGAGATATACGCGTGGTTTAGGAAGGAAGAGGATTGTTATTTCTTGCAATGAGGATGATTCGTCCATCTACTTGACGCCGAAGGCATCGTCGAAGAGGCCCTGCAGCGCCGTCAGGACGACGGTGGACACCGATAAGTCTCTGCTCGAGACCCTACCTCAGGAGATTCTGGTTAGTTCAAATTTCTGTAGATTAAATTTCTTCGAAATTATCAAATCTTCACATTCGCAATTCGTCTTTCGACTTCTGTTTCTAAATTGATTTTCCCCCTTTGTTCTCTCCATCAGATTAGGATACTCTGCGGTGTAGACCATGATGATTTGAAACAGCTAATCCGCATTTCGAAAACAATTAGCGAAGCGGTAAATATCACTCGCATCATTATTCACTTAATTTGTTTCCGTTCATTTCTGATTCTCATCGATTTAGGGTTTCTATTTCATTTACAGACTTTGATTGCAAAAGAATGGCATTTCGCCTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCAGCGCCTTTGAGTTCGATAACTCCAGCGATCTTGACGAGATTGAAGCCCCAAATGCTCCAACCACTAAACGATTTAGGTCATTAAACAGGAAGAAGCTCGCGGACATTTCCGTGGCCTTATTCGCATAA

mRNA sequence

ATTTGCATAGCAAAAGCTTTCTTTGAAATTGAAACAAAAACAGAGAGAGACTGAGAGAGATATTCGAATCTCCACGGCCATCCACAATCAGATAACCGAATACGTTTAGTTTAATTCGATATTGGGAATTGAAAATGGCGTTGGGAAAGAAGAGCGGTTGTTTAAAATCGAAAAGCGTCGTCTCTGCTGCCGATAATGGACTGGATTTCGGAATTGTGAGATATACGCGTGGTTTAGGAAGGAAGAGGATTGTTATTTCTTGCAATGAGGATGATTCGTCCATCTACTTGACGCCGAAGGCATCGTCGAAGAGGCCCTGCAGCGCCGTCAGGACGACGGTGGACACCGATAAGTCTCTGCTCGAGACCCTACCTCAGGAGATTCTGATTAGGATACTCTGCGGTGTAGACCATGATGATTTGAAACAGCTAATCCGCATTTCGAAAACAATTAGCGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCCTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCAGCGCCTTTGAGTTCGATAACTCCAGCGATCTTGACGAGATTGAAGCCCCAAATGCTCCAACCACTAAACGATTTAGGTCATTAAACAGGAAGAAGCTCGCGGACATTTCCGTGGCCTTATTCGCATAA

Coding sequence (CDS)

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTAAAATCGAAAAGCGTCGTCTCTGCTGCCGATAATGGACTGGATTTCGGAATTGTGAGATATACGCGTGGTTTAGGAAGGAAGAGGATTGTTATTTCTTGCAATGAGGATGATTCGTCCATCTACTTGACGCCGAAGGCATCGTCGAAGAGGCCCTGCAGCGCCGTCAGGACGACGGTGGACACCGATAAGTCTCTGCTCGAGACCCTACCTCAGGAGATTCTGATTAGGATACTCTGCGGTGTAGACCATGATGATTTGAAACAGCTAATCCGCATTTCGAAAACAATTAGCGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCCTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCAGCGCCTTTGAGTTCGATAACTCCAGCGATCTTGACGAGATTGAAGCCCCAAATGCTCCAACCACTAAACGATTTAGGTCATTAAACAGGAAGAAGCTCGCGGACATTTCCGTGGCCTTATTCGCATAA

Homology

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BLAST of CmoCh07G002660 vs. Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 83/191 (43.46%), Postives = 119/191 (62.30%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGI--VRYTRGLGRKRIVIS-CNEDDSS-------- 60
           MAL K+   + S +     +  L+ G+  VR+TRGLGRKRI+IS C  +  S        
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  IYLTP--KASSKRPCSAVR--TTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKT 120
           +  +P  K+S KR  S +   ++  ++KS LE LPQ++LIR++CGVDH+DLK L  +SK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 ISEATLIAKEWHFAYSTPSKVRAFRSAFEFDNSSDL----DEIEAPNAPTTKRFRSLNRK 172
           I EA+L+AK  HFAY+TP K RAFR++ + +  SD     D+IE PNAP   R+    RK
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of CmoCh07G002660 vs. Swiss-Prot
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-29
Identity = 86/186 (46.24%), Postives = 111/186 (59.68%), Query Frame = 1


Query: 1   MALGKK-----SGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNED-DSSIYLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  ++ + SI+ +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KASSKRPCSAVRTTVDTDKSL-LETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIA 120
               K+ C    T+V   +S  LE LP +IL+RI+CGV+H+DLKQL  +SKTI EAT+IA
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIA 120

Query: 121 KEWHFAYSTPSKVRAFRSA-----FEFDNSSDLDEIEAPNAPTTKRFR--SLNRKK-LAD 172
           K+ HFAYSTP K   F          FD   D +EIEAP AP  KR+R   +NR K  + 
Sbjct: 121 KQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSG 180

[Close]

BLAST of CmoCh07G002660 vs. Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.3e-25
Identity = 75/157 (47.77%), Postives = 95/157 (60.51%), Query Frame = 1


Query: 23  LDFGIVRYTRGLGRKRIVIS--CNEDDSSIYLTPKASSKRPCSAVRTTVDTDKSLLETLP 82
           L  G VR+TRGLGRKRI+IS    E+DS     P   +   C          +SLLETL 
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDSPPVKRPSHETTESC----------RSLLETLH 78

Query: 83  QEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVRAFRSAF-----EF 142
           Q+ILIR+LC VDH+DL  L R+SKTI +A + AK+ HF YSTP K   FR A        
Sbjct: 79  QDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNS 138

Query: 143 DNSSDLDEIEAPNAPTTKRFRSLNRKK-LADISVALF 172
           ++SS  DE+E PNAP  +RF  +NR+  L+ IS+ LF
Sbjct: 139 NSSSQDDEMEPPNAPIRRRF--INRESDLSKISMVLF 163

[Close]

BLAST of CmoCh07G002660 vs. Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.6e-09
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 48  SSIYLTPKASSKRPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTIS 107
           +++  TPK     PC          +S LE+LP ++L++I+C + HD LK +  +S+ I 
Sbjct: 142 NTLLRTPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIR 201

Query: 108 EATLIAKEWHFAYSTPSKVR 128
            AT++A+++HF Y+TP + R
Sbjct: 202 MATILARQYHFNYTTPDRSR 213

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BLAST of CmoCh07G002660 vs. TrEMBL
Match: A0A0A0KI01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516960 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.7e-68
Identity = 135/173 (78.03%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISC+E+DS   LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVR FR+A E D+SSD DEIEAPNA  T+RFR+ LNRKKLA+IS+ALFA
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFA 173

[Close]

BLAST of CmoCh07G002660 vs. TrEMBL
Match: A0A067JMY6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21355 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.1e-41
Identity = 93/174 (53.45%), Postives = 123/174 (70.69%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALG++   +KS+      + GL FG V+YTR  GRKRI+IS +ED   +    +   KR
Sbjct: 1   MALGRRCNSMKSRRTGIFGEEGLGFGFVKYTRSFGRKRILISNSEDFLPLDSPIQTPLKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+     ++ +KS LE+LPQ+IL++ILCGVDHDDLKQL  +S  I EATL+AK+WHFAY
Sbjct: 61  HCN-----LEPEKSALESLPQDILVKILCGVDHDDLKQLFHVSTVIREATLVAKKWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKR-FRS-LNRKKLADISVALFA 173
           STP K  AFR++ +F+N S+ ++IEAPNAP   R ++S LN K LADISVALFA
Sbjct: 121 STPKKTPAFRTSIDFENPSEFEDIEAPNAPKVPRSYKSRLNGKNLADISVALFA 169

[Close]

BLAST of CmoCh07G002660 vs. TrEMBL
Match: A0A067GJZ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029717mg PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 97/176 (55.11%), Postives = 125/176 (71.02%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASS-K 60
           MALG+    LKS+  V++   GL  G VRYTRGLGRKRI+I+  E+ SS     K+SS K
Sbjct: 1   MALGQNCSSLKSRRGVASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RPCSAVRTTVDTD-KSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHF 120
           R CS      + D KS LE LPQ+ILIRILCGV+H+DLKQL  +S+ I EATLIAK+WHF
Sbjct: 61  RQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHF 120

Query: 121 AYSTPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKR-FRS-LNRKKLADISVALFA 173
           AY+TP K R F+++ ++++  +  E+EAPNAP   R ++S L  +KLADISVALFA
Sbjct: 121 AYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFA 176

[Close]

BLAST of CmoCh07G002660 vs. TrEMBL
Match: V4U8Z6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016832mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.3e-40
Identity = 97/176 (55.11%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASS-K 60
           MALG+    LKS+  V+    GL  G VRYTRGLGRKRI+I+  E+ SS     K+SS K
Sbjct: 1   MALGQNCSSLKSRRGVAGTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RPCSAVRTTVDTD-KSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHF 120
           R CS      + D KS LE LPQ+ILIRILCGV+H+DLKQL  +S+ I EATLIAK+WHF
Sbjct: 61  RQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHF 120

Query: 121 AYSTPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKR-FRS-LNRKKLADISVALFA 173
           AY+TP K R F+++ ++++  +  E+EAPNAP   R ++S L  +KLADISVALFA
Sbjct: 121 AYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFA 176

[Close]

BLAST of CmoCh07G002660 vs. TrEMBL
Match: M5X2P6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012223mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.3e-40
Identity = 102/176 (57.95%), Postives = 123/176 (69.89%), Query Frame = 1


Query: 1   MALGKK-SGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSK 60
           MALGKK   CLKSK     A+ GL+ G V+YTR LGRKRI IS N + S     P    K
Sbjct: 1   MALGKKCKSCLKSKRGGLVAEEGLELGFVKYTRALGRKRIGISNNGEPSPTDSYPSTPLK 60

Query: 61  RPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFA 120
           +  S  +   D++ S LE LPQEILI+I+CGV H+DLKQL  +SK I EATLIAK+WHFA
Sbjct: 61  KQRSG-KLVSDSETSALEALPQEILIKIVCGVHHEDLKQLFHVSKPIREATLIAKQWHFA 120

Query: 121 YSTPSKVRAFRSAFEFDNSSDLDEIEAPNAPT--TKRFRSL-NRKKLADISVALFA 173
           YSTPSK  AFR+A +F +S D+DEIEAPNAP    ++ R L +RKKLA+ISV LFA
Sbjct: 121 YSTPSKTPAFRTAIDF-SSDDMDEIEAPNAPKQWREQHRQLPSRKKLAEISVNLFA 174

[Close]

BLAST of CmoCh07G002660 vs. TAIR10
Match: AT4G21510.1 (AT4G21510.1 F-box family protein)

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-31
Identity = 83/191 (43.46%), Postives = 119/191 (62.30%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGI--VRYTRGLGRKRIVIS-CNEDDSS-------- 60
           MAL K+   + S +     +  L+ G+  VR+TRGLGRKRI+IS C  +  S        
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  IYLTP--KASSKRPCSAVR--TTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKT 120
           +  +P  K+S KR  S +   ++  ++KS LE LPQ++LIR++CGVDH+DLK L  +SK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 ISEATLIAKEWHFAYSTPSKVRAFRSAFEFDNSSDL----DEIEAPNAPTTKRFRSLNRK 172
           I EA+L+AK  HFAY+TP K RAFR++ + +  SD     D+IE PNAP   R+    RK
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of CmoCh07G002660 vs. TAIR10
Match: AT4G05010.1 (AT4G05010.1 F-box family protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-26
Identity = 75/157 (47.77%), Postives = 95/157 (60.51%), Query Frame = 1


Query: 23  LDFGIVRYTRGLGRKRIVIS--CNEDDSSIYLTPKASSKRPCSAVRTTVDTDKSLLETLP 82
           L  G VR+TRGLGRKRI+IS    E+DS     P   +   C          +SLLETL 
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDSPPVKRPSHETTESC----------RSLLETLH 78

Query: 83  QEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVRAFRSAF-----EF 142
           Q+ILIR+LC VDH+DL  L R+SKTI +A + AK+ HF YSTP K   FR A        
Sbjct: 79  QDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNS 138

Query: 143 DNSSDLDEIEAPNAPTTKRFRSLNRKK-LADISVALF 172
           ++SS  DE+E PNAP  +RF  +NR+  L+ IS+ LF
Sbjct: 139 NSSSQDDEMEPPNAPIRRRF--INRESDLSKISMVLF 163

[Close]

BLAST of CmoCh07G002660 vs. TAIR10
Match: AT1G61340.2 (AT1G61340.2 F-box family protein)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-19
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 1


Query: 83  ILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVRAFRSA-----FEFDN 142
           +++RI+CGV+H+DLKQL  +SKTI EAT+IAK+ HFAYSTP K   F          FD 
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDKPFDV 193

Query: 143 SSDLDEIEAPNAPTTKRFR--SLNRKK-LADISVALF 172
             D +EIEAP AP  KR+R   +NR K  + +SVALF
Sbjct: 194 EDDDEEIEAPGAPLQKRYRLSRINRNKDDSGVSVALF 230

[Close]

BLAST of CmoCh07G002660 vs. TAIR10
Match: AT4G35930.1 (AT4G35930.1 F-box family protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-10
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 48  SSIYLTPKASSKRPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTIS 107
           +++  TPK     PC          +S LE+LP ++L++I+C + HD LK +  +S+ I 
Sbjct: 142 NTLLRTPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIR 201

Query: 108 EATLIAKEWHFAYSTPSKVR 128
            AT++A+++HF Y+TP + R
Sbjct: 202 MATILARQYHFNYTTPDRSR 213

[Close]

BLAST of CmoCh07G002660 vs. NCBI nr
Match: gi|659078787|ref|XP_008439907.1| (PREDICTED: F-box protein At4g05010-like [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 8.8e-71
Identity = 141/173 (81.50%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISCNE+DSSI LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTISEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVRAFR+A E ++SSD DEIEAPNA  T+RFRS LNRKKLA+ISVALFA
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFA 173

[Close]

BLAST of CmoCh07G002660 vs. NCBI nr
Match: gi|449433892|ref|XP_004134730.1| (PREDICTED: F-box protein At4g05010 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 5.3e-68
Identity = 135/173 (78.03%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISC+E+DS   LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVR FR+A E D+SSD DEIEAPNA  T+RFR+ LNRKKLA+IS+ALFA
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFA 173

[Close]

BLAST of CmoCh07G002660 vs. NCBI nr
Match: gi|802781626|ref|XP_012091491.1| (PREDICTED: F-box protein At1g61340 [Jatropha curcas])

HSP 1 Score: 175.6 bits (444), Expect = 7.3e-41
Identity = 93/174 (53.45%), Postives = 123/174 (70.69%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALG++   +KS+      + GL FG V+YTR  GRKRI+IS +ED   +    +   KR
Sbjct: 1   MALGRRCNSMKSRRTGIFGEEGLGFGFVKYTRSFGRKRILISNSEDFLPLDSPIQTPLKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+     ++ +KS LE+LPQ+IL++ILCGVDHDDLKQL  +S  I EATL+AK+WHFAY
Sbjct: 61  HCN-----LEPEKSALESLPQDILVKILCGVDHDDLKQLFHVSTVIREATLVAKKWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKR-FRS-LNRKKLADISVALFA 173
           STP K  AFR++ +F+N S+ ++IEAPNAP   R ++S LN K LADISVALFA
Sbjct: 121 STPKKTPAFRTSIDFENPSEFEDIEAPNAPKVPRSYKSRLNGKNLADISVALFA 169

[Close]

BLAST of CmoCh07G002660 vs. NCBI nr
Match: gi|568827083|ref|XP_006467897.1| (PREDICTED: F-box protein At1g61340 [Citrus sinensis])

HSP 1 Score: 173.3 bits (438), Expect = 3.6e-40
Identity = 97/176 (55.11%), Postives = 125/176 (71.02%), Query Frame = 1


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASS-K 60
           MALG+    LKS+  V++   GL  G VRYTRGLGRKRI+I+  E+ SS     K+SS K
Sbjct: 1   MALGQNCSSLKSRRGVASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLK 60

Query: 61  RPCSAVRTTVDTD-KSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHF 120
           R CS      + D KS LE LPQ+ILIRILCGV+H+DLKQL  +S+ I EATLIAK+WHF
Sbjct: 61  RQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHF 120

Query: 121 AYSTPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKR-FRS-LNRKKLADISVALFA 173
           AY+TP K R F+++ ++++  +  E+EAPNAP   R ++S L  +KLADISVALFA
Sbjct: 121 AYNTPRKTRVFKTSIDYEDPIENAEVEAPNAPRQMRAYKSRLTSQKLADISVALFA 176

[Close]

BLAST of CmoCh07G002660 vs. NCBI nr
Match: gi|595874825|ref|XP_007212141.1| (hypothetical protein PRUPE_ppa012223mg [Prunus persica])

HSP 1 Score: 172.9 bits (437), Expect = 4.7e-40
Identity = 102/176 (57.95%), Postives = 123/176 (69.89%), Query Frame = 1


Query: 1   MALGKK-SGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSK 60
           MALGKK   CLKSK     A+ GL+ G V+YTR LGRKRI IS N + S     P    K
Sbjct: 1   MALGKKCKSCLKSKRGGLVAEEGLELGFVKYTRALGRKRIGISNNGEPSPTDSYPSTPLK 60

Query: 61  RPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFA 120
           +  S  +   D++ S LE LPQEILI+I+CGV H+DLKQL  +SK I EATLIAK+WHFA
Sbjct: 61  KQRSG-KLVSDSETSALEALPQEILIKIVCGVHHEDLKQLFHVSKPIREATLIAKQWHFA 120

Query: 121 YSTPSKVRAFRSAFEFDNSSDLDEIEAPNAPT--TKRFRSL-NRKKLADISVALFA 173
           YSTPSK  AFR+A +F +S D+DEIEAPNAP    ++ R L +RKKLA+ISV LFA
Sbjct: 121 YSTPSKTPAFRTAIDF-SSDDMDEIEAPNAPKQWREQHRQLPSRKKLAEISVNLFA 174

The following BLAST results are available for this feature:

BLAST of CmoCh07G002660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKI27_ARATH	1.7e-29	43.46	F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2	[more]
FB316_ARATH	3.7e-29	46.24	F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1	[more]
FB220_ARATH	4.3e-25	47.77	F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1	[more]
FB248_ARATH	5.6e-09	35.00	F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1	[more]

BLAST of CmoCh07G002660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI01_CUCSA	3.7e-68	78.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516960 PE=4 SV=1	[more]
A0A067JMY6_JATCU	5.1e-41	53.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21355 PE=4 SV=1	[more]
A0A067GJZ5_CITSI	2.5e-40	55.11	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029717mg PE=4 SV=1	[more]
V4U8Z6_9ROSI	3.3e-40	55.11	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016832mg PE=4 SV=1	[more]
M5X2P6_PRUPE	3.3e-40	57.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012223mg PE=4 SV=1	[more]

BLAST of CmoCh07G002660 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21510.1	9.5e-31	43.46	F-box family protein	[more]
AT4G05010.1	2.4e-26	47.77	F-box family protein	[more]
AT1G61340.2	4.9e-19	52.58	F-box family protein	[more]
AT4G35930.1	3.2e-10	35.00	F-box family protein	[more]

BLAST of CmoCh07G002660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078787\|ref\|XP_008439907.1\|	8.8e-71	81.50	PREDICTED: F-box protein At4g05010-like [Cucumis melo]	[more]
gi\|449433892\|ref\|XP_004134730.1\|	5.3e-68	78.03	PREDICTED: F-box protein At4g05010 [Cucumis sativus]	[more]
gi\|802781626\|ref\|XP_012091491.1\|	7.3e-41	53.45	PREDICTED: F-box protein At1g61340 [Jatropha curcas]	[more]
gi\|568827083\|ref\|XP_006467897.1\|	3.6e-40	55.11	PREDICTED: F-box protein At1g61340 [Citrus sinensis]	[more]
gi\|595874825\|ref\|XP_007212141.1\|	4.7e-40	57.95	hypothetical protein PRUPE_ppa012223mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G002660.1	CmoCh07G002660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 73..123 score: 8
None	No IPR available	PANTHER	PTHR34049	FAMILY NOT NAMED	coord: 22..172 score: 5.1
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 22..172 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G002660	Cucsa.045880	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G002660	CmaCh03G004910	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G002660	CmaCh07G002750	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G002660	Cla001349	Watermelon (97103) v1	cmowmB816
CmoCh07G002660	Csa6G516960	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G002660	MELO3C007321	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G002660	ClCG01G022560	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G002660	CSPI06G34240	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G002660	Lsi01G003530	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G002660	Cp4.1LG10g09170	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G002660	Cp4.1LG19g07350	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G002660	MELO3C007321.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G002660	CsaV3_6G049750	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G002660	Cla97C01G022420	Watermelon (97103) v2	cmowmbB849
CmoCh07G002660	Bhi03G000369	Wax gourd	cmowgoB1051
CmoCh07G002660	CsGy6G033860	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G002660	Carg13743	Silver-seed gourd	carcmoB1250
CmoCh07G002660	Carg07806	Silver-seed gourd	carcmoB0888

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G002660	CmoCh03G005100	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G002660	Cucurbita maxima (Rimu)	cmacmoB240
CmoCh07G002660	Cucurbita maxima (Rimu)	cmacmoB430
CmoCh07G002660	Cucurbita maxima (Rimu)	cmacmoB535
CmoCh07G002660	Cucurbita maxima (Rimu)	cmacmoB629
CmoCh07G002660	Wild cucumber (PI 183967)	cmocpiB845
CmoCh07G002660	Watermelon (Charleston Gray)	cmowcgB761
CmoCh07G002660	Cucurbita pepo (Zucchini)	cmocpeB799
CmoCh07G002660	Cucurbita pepo (Zucchini)	cmocpeB818
CmoCh07G002660	Cucurbita pepo (Zucchini)	cmocpeB825
CmoCh07G002660	Cucurbita pepo (Zucchini)	cmocpeB826
CmoCh07G002660	Bottle gourd (USVL1VR-Ls)	cmolsiB786
CmoCh07G002660	Cucumber (Gy14) v2	cgybcmoB133
CmoCh07G002660	Melon (DHL92) v3.6.1	cmomedB875
CmoCh07G002660	Silver-seed gourd	carcmoB0046
CmoCh07G002660	Silver-seed gourd	carcmoB0209
CmoCh07G002660	Silver-seed gourd	carcmoB1187
CmoCh07G002660	Silver-seed gourd	carcmoB1270
CmoCh07G002660	Cucumber (Chinese Long) v3	cmocucB0989
CmoCh07G002660	Watermelon (97103) v2	cmowmbB858
CmoCh07G002660	Wax gourd	cmowgoB1075
CmoCh07G002660	Cucurbita moschata (Rifu)	cmocmoB036
CmoCh07G002660	Cucurbita moschata (Rifu)	cmocmoB132
CmoCh07G002660	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh07G002660	Cucurbita moschata (Rifu)	cmocmoB349
CmoCh07G002660	Cucurbita moschata (Rifu)	cmocmoB400
CmoCh07G002660	Cucurbita moschata (Rifu)	cmocmoB444