Lsi01G002280 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G002280
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription factor bHLH35-like protein
Locationchr01 : 2078299 .. 2079380 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAATATTACATAAGTTTACACAGATGGGGTTCCTCAGTTTTTAAATTCACATGAGAACAAGAGAGAAAATAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACACACAGAGAGCAACTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTGTGGAGCAAGTTCAAGCTGAGAGACAACCAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGTAATTCCTAAAACATTATGTTTTTGTTATGTTTTTTCTATTCTCTGTTTTTTCACTTCAGTTTGTTTGGGACATTAACAATAATCGGGTCCTCTGTTTATGCAGGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGTATTTTTTCTCCCTCTCTCTCTTTTAACAATTCAAATTCTTCCTAATATTCAATATATATTTAGATATGATCTTGTGATGGGAACAGAGTATTAAAAACGCGAAATTTAATGTTCTAATAATACATAAAAGCAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTGAATGAAAATGTTTCTTGCTATTCCATTCTCTTGTATTTTTCTTTCTTTCTATCTAATTCTAATTTGT

mRNA sequence

ATTAAATATTACATAAGTTTACACAGATGGGGTTCCTCAGTTTTTAAATTCACATGAGAACAAGAGAGAAAATAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACACACAGAGAGCAACTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTGTGGAGCAAGTTCAAGCTGAGAGACAACCAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTGAATGAAAATGTTTCTTGCTATTCCATTCTCTTGTATTTTTCTTTCTTTCTATCTAATTCTAATTTGT

Coding sequence (CDS)

ATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAG

Protein sequence

MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLATKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI
Homology
[Close]
BLAST of Lsi01G002280 vs. TrEMBL
Match: E5GC31_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 9.5e-80
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]
BLAST of Lsi01G002280 vs. TrEMBL
Match: A0A0A0KHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519710 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 8.0e-79
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQRCVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKD-IPQNDAEI 174
           CTECFCMEA AVAED HQL+N+SDITEAINVAID KLLA NQHH D IP NDA++
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDSIPHNDAQL 175

[Close]
BLAST of Lsi01G002280 vs. TrEMBL
Match: A0A0D2UFP3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G160900 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 83/154 (53.90%), Postives = 108/154 (70.13%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           M   +Q+R  SR KL+L+R+L T   S R+R +  N +L  HKLK+KLE ++REY NL+A
Sbjct: 1   MAKKVQRRAASRRKLQLLRTL-TNSKSVRRRSIILNVLLHFHKLKVKLEEIQREYQNLMA 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEE-FRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            + EY N +K    PKEVKVEK GE+ F VKV+C +GGD+LVS++EAFE++GLNVV ARV
Sbjct: 61  IRNEYFNLLKHIQIPKEVKVEKLGEDQFVVKVRCNRGGDKLVSIVEAFEELGLNVVRARV 120

Query: 121 SCTECFCMEAIAVAEDHQLINVSDITEAINVAID 154
            C   F MEAI VA+D Q     D+T+AI  AID
Sbjct: 121 CCNHFFAMEAIVVAQDQQTTKTKDVTQAILKAID 153

[Close]
BLAST of Lsi01G002280 vs. TrEMBL
Match: A0A0B0MJP3_GOSAR (Transcription factor bHLH35-like protein OS=Gossypium arboreum GN=F383_26226 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 83/154 (53.90%), Postives = 108/154 (70.13%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           M   +Q+R  SR KL+L+R+L T   S R+R +  N +L  HKLK+KLE ++REY NL+A
Sbjct: 1   MAKKVQRRAASRRKLQLLRTL-TNSKSVRRRSIILNVLLHFHKLKVKLEEIQREYQNLMA 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEE-FRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            + EY N +K    PKEVKVEK GE+ F VKV+C +GGD+LVS++EAFE++GLNVV ARV
Sbjct: 61  IRNEYFNLLKHIQIPKEVKVEKLGEDQFVVKVRCNRGGDKLVSIVEAFEELGLNVVRARV 120

Query: 121 SCTECFCMEAIAVAEDHQLINVSDITEAINVAID 154
            C   F MEAI VA+D Q     D+T+AI  AID
Sbjct: 121 CCNHFFAMEAIVVAQDQQTTKTKDVTQAILKAID 153

[Close]
BLAST of Lsi01G002280 vs. TrEMBL
Match: A0A061GDH3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029655 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.6e-34
Identity = 84/154 (54.55%), Postives = 111/154 (72.08%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MV+ LQ+R   R KL L+R+L   +S  R   V  N +L I+KLK+KLE ++REY NL+A
Sbjct: 1   MVTKLQRRTAPRRKLHLLRTLTNSKSVKRSSVVL-NVLLHIYKLKVKLEEIQREYQNLMA 60

Query: 61  TKREYLNSIKQFHAPK-EVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            K EYL  ++    PK EVKVEK GEEF VKV C KGGD+LVS+LEAF+++GLNV++ARV
Sbjct: 61  IKNEYLTLLEHVQIPKQEVKVEKIGEEFVVKVTCNKGGDKLVSILEAFDELGLNVLQARV 120

Query: 121 SCTECFCMEAIAVAEDHQLINVSDITEAINVAID 154
           SC   F MEAIAVA+D Q  ++ D+T+A+  AI+
Sbjct: 121 SCNHFFSMEAIAVAQDQQTTDIKDVTQAVLKAIE 153

[Close]
BLAST of Lsi01G002280 vs. TAIR10
Match: AT1G29270.1 (AT1G29270.1 unknown protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-23
Identity = 66/154 (42.86%), Postives = 100/154 (64.94%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESS-GRQRCVFWNAVLFIHKLKLKLEAVEREYSNLL 60
           MV++ QK+  S+ K   +++L  ++ S   Q  V   A+L+I  LKL++EA++REY +L 
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 61  ATKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            TK+E L      H  +EVKVEK GE F+VK+K  +G + LV++LEAFE+MGLNV +AR 
Sbjct: 61  ITKKESL------HQFQEVKVEKIGEMFQVKIKSPRGENNLVNILEAFEEMGLNVAQARA 120

Query: 121 SCTECFCMEAIAVAED-HQLINVSDITEAINVAI 153
           SC + F MEAI   +   +L +V D+T+ +  A+
Sbjct: 121 SCLDSFAMEAIVAPQSKDKLCSVDDLTQTLVKAL 148

[Close]
BLAST of Lsi01G002280 vs. TAIR10
Match: AT2G40435.1 (AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1))

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-09
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVS  QKR   + K +L+RS+ T   +     +  +A  +I KLK K+E   ++ +    
Sbjct: 1   MVSREQKRGSLQEKFQLLRSI-TNSHAENDTSIIMDASKYIQKLKQKVERFNQDPT---- 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGD-RLVSVLEAFEKMGLNVVEARV 120
              E  +S         V VE   + F + V   K     LVSVLEAFE +GLNV+EAR 
Sbjct: 61  --AEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARA 120

Query: 121 SCTECFCMEAIAVA-EDHQLINVSDITEAINVAI 153
           SCT+ F + A+ +  ED + ++   + +A+  AI
Sbjct: 121 SCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAI 147

[Close]
BLAST of Lsi01G002280 vs. TAIR10
Match: AT3G56220.1 (AT3G56220.1 transcription regulators)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-09
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 1 

Query: 1   MVSTLQKRFDS-RNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLL 60
           MVS   KR  S R K  L+RS+ T   +  +  +  +A  +I KLK K+E +        
Sbjct: 1   MVSREHKRGSSLREKFHLLRSI-TDSHAESETSIIVDASKYIKKLKQKVEKINN------ 60

Query: 61  ATKREYLNSIKQFHAPKE-VKVEKNGEEFRVKVKCEKG-GDRLVSVLEAFEKMGLNVVEA 120
           AT  E   S ++   P   V VE   + F +KV   K     LV VLE FE +GL+VVEA
Sbjct: 61  ATTSE--QSFRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEA 120

Query: 121 RVSCTECFCMEAIAVA--EDHQLINVSDITEAINVAI 153
           RVSCT+ F + AI  +  +D   I+   + +A+  AI
Sbjct: 121 RVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAI 148

[Close]
BLAST of Lsi01G002280 vs. NCBI nr
Match: gi|659078435|ref|XP_008439723.1| (PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 1.4e-79
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]
BLAST of Lsi01G002280 vs. NCBI nr
Match: gi|449433736|ref|XP_004134653.1| (PREDICTED: uncharacterized protein LOC101213083 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQRCVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKD-IPQNDAEI 174
           CTECFCMEA AVAED HQL+N+SDITEAINVAID KLLA NQHH D IP NDA++
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDSIPHNDAQL 175

[Close]
BLAST of Lsi01G002280 vs. NCBI nr
Match: gi|823232574|ref|XP_012448993.1| (PREDICTED: uncharacterized protein LOC105772215 [Gossypium raimondii])

HSP 1 Score: 153.7 bits (387), Expect = 3.0e-34
Identity = 83/154 (53.90%), Postives = 108/154 (70.13%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           M   +Q+R  SR KL+L+R+L T   S R+R +  N +L  HKLK+KLE ++REY NL+A
Sbjct: 1   MAKKVQRRAASRRKLQLLRTL-TNSKSVRRRSIILNVLLHFHKLKVKLEEIQREYQNLMA 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEE-FRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            + EY N +K    PKEVKVEK GE+ F VKV+C +GGD+LVS++EAFE++GLNVV ARV
Sbjct: 61  IRNEYFNLLKHIQIPKEVKVEKLGEDQFVVKVRCNRGGDKLVSIVEAFEELGLNVVRARV 120

Query: 121 SCTECFCMEAIAVAEDHQLINVSDITEAINVAID 154
            C   F MEAI VA+D Q     D+T+AI  AID
Sbjct: 121 CCNHFFAMEAIVVAQDQQTTKTKDVTQAILKAID 153

[Close]
BLAST of Lsi01G002280 vs. NCBI nr
Match: gi|590623442|ref|XP_007025323.1| (Uncharacterized protein TCM_029655 [Theobroma cacao])

HSP 1 Score: 152.5 bits (384), Expect = 6.6e-34
Identity = 84/154 (54.55%), Postives = 111/154 (72.08%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MV+ LQ+R   R KL L+R+L   +S  R   V  N +L I+KLK+KLE ++REY NL+A
Sbjct: 1   MVTKLQRRTAPRRKLHLLRTLTNSKSVKRSSVVL-NVLLHIYKLKVKLEEIQREYQNLMA 60

Query: 61  TKREYLNSIKQFHAPK-EVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            K EYL  ++    PK EVKVEK GEEF VKV C KGGD+LVS+LEAF+++GLNV++ARV
Sbjct: 61  IKNEYLTLLEHVQIPKQEVKVEKIGEEFVVKVTCNKGGDKLVSILEAFDELGLNVLQARV 120

Query: 121 SCTECFCMEAIAVAEDHQLINVSDITEAINVAID 154
           SC   F MEAIAVA+D Q  ++ D+T+A+  AI+
Sbjct: 121 SCNHFFSMEAIAVAQDQQTTDIKDVTQAVLKAIE 153

[Close]
BLAST of Lsi01G002280 vs. NCBI nr
Match: gi|823224569|ref|XP_012445055.1| (PREDICTED: uncharacterized protein LOC105769147 [Gossypium raimondii])

HSP 1 Score: 149.4 bits (376), Expect = 5.6e-33
Identity = 82/168 (48.81%), Postives = 115/168 (68.45%), Query Frame = 1 

Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MV+ LQ+R  SR KL+ + +L+  +S  R   V  N +L  HKLK+KLE + REY NL+ 
Sbjct: 1   MVTKLQRRTASRRKLQFLPTLSNTKSVKRSSIVL-NVLLQCHKLKVKLEEIHREYQNLMT 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            + +Y   +K     KEVKVEK GEEF VKV C KG D+L+S+LEAFE++GLNVV ARV+
Sbjct: 61  IRNQYFTLLKHIQVSKEVKVEKVGEEFVVKVSCNKGRDKLISILEAFEELGLNVVRARVN 120

Query: 121 CTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQ 169
           C+  F MEAIAVA+D +  +++D+T+AI +AI+ +    ++H KD  Q
Sbjct: 121 CSHFFAMEAIAVAQDQKTTDINDVTQAILMAIEKQ---GDEHIKDFRQ 164

The following BLAST results are available for this feature:
BLAST of Lsi01G002280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G002280 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC31_CUCME9.5e-8089.66Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KHW9_CUCSA8.0e-7989.71Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519710 PE=4 SV=1[more]
A0A0D2UFP3_GOSRA2.1e-3453.90Uncharacterized protein OS=Gossypium raimondii GN=B456_010G160900 PE=4 SV=1[more]
A0A0B0MJP3_GOSAR2.1e-3453.90Transcription factor bHLH35-like protein OS=Gossypium arboreum GN=F383_26226 PE=... [more]
A0A061GDH3_THECC4.6e-3454.55Uncharacterized protein OS=Theobroma cacao GN=TCM_029655 PE=4 SV=1[more]
BLAST of Lsi01G002280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G29270.11.5e-2342.86 unknown protein[more]
AT2G40435.13.5e-0933.77 BEST Arabidopsis thaliana protein match is: transcription regulators... [more]
AT3G56220.13.5e-0936.31 transcription regulators[more]
BLAST of Lsi01G002280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078435|ref|XP_008439723.1|1.4e-7989.66PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo][more]
gi|449433736|ref|XP_004134653.1|1.2e-7889.71PREDICTED: uncharacterized protein LOC101213083 [Cucumis sativus][more]
gi|823232574|ref|XP_012448993.1|3.0e-3453.90PREDICTED: uncharacterized protein LOC105772215 [Gossypium raimondii][more]
gi|590623442|ref|XP_007025323.1|6.6e-3454.55Uncharacterized protein TCM_029655 [Theobroma cacao][more]
gi|823224569|ref|XP_012445055.1|5.6e-3348.81PREDICTED: uncharacterized protein LOC105769147 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G002280.1Lsi01G002280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 41..68
scor
NoneNo IPR availablePANTHERPTHR31945FAMILY NOT NAMEDcoord: 1..153
score: 2.6
NoneNo IPR availablePANTHERPTHR31945:SF19SUBFAMILY NOT NAMEDcoord: 1..153
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G002280Csa6G519710Cucumber (Chinese Long) v2culsiB434
Lsi01G002280CSPI06G35520Wild cucumber (PI 183967)cpilsiB439
Lsi01G002280Cucsa.047090Cucumber (Gy14) v1cgylsiB022
Lsi01G002280CmaCh03G013320Cucurbita maxima (Rimu)cmalsiB602
Lsi01G002280CmaCh07G001750Cucurbita maxima (Rimu)cmalsiB786
Lsi01G002280CmoCh07G001700Cucurbita moschata (Rifu)cmolsiB774
Lsi01G002280CmoCh03G013330Cucurbita moschata (Rifu)cmolsiB588
Lsi01G002280Cla009706Watermelon (97103) v1lsiwmB144
Lsi01G002280MELO3C007201Melon (DHL92) v3.5.1lsimeB149
Lsi01G002280ClCG01G023870Watermelon (Charleston Gray)lsiwcgB127
Lsi01G002280MELO3C007201.2Melon (DHL92) v3.6.1lsimedB156
Lsi01G002280Cla97C01G023830Watermelon (97103) v2lsiwmbB115
Lsi01G002280Bhi07G000180Wax gourdlsiwgoB196
Lsi01G002280Cp4.1LG19g06810Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G002280Cp4.1LG10g05530Cucurbita pepo (Zucchini)cpelsiB049
Lsi01G002280CsGy6G035010Cucumber (Gy14) v2cgyblsiB398
Lsi01G002280Carg15355Silver-seed gourdcarlsiB496
Lsi01G002280Carg23113Silver-seed gourdcarlsiB871
Lsi01G002280CsaV3_6G051020Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G002280Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi01G002280Cucumber (Gy14) v1cgylsiB357
Lsi01G002280Cucurbita maxima (Rimu)cmalsiB199
Lsi01G002280Cucurbita maxima (Rimu)cmalsiB368
Lsi01G002280Cucurbita maxima (Rimu)cmalsiB476
Lsi01G002280Cucurbita moschata (Rifu)cmolsiB189
Lsi01G002280Cucurbita moschata (Rifu)cmolsiB354
Lsi01G002280Cucurbita moschata (Rifu)cmolsiB461
Lsi01G002280Cucurbita pepo (Zucchini)cpelsiB021
Lsi01G002280Cucurbita pepo (Zucchini)cpelsiB202
Lsi01G002280Cucurbita pepo (Zucchini)cpelsiB415
Lsi01G002280Wild cucumber (PI 183967)cpilsiB016
Lsi01G002280Cucumber (Chinese Long) v2culsiB017
Lsi01G002280Melon (DHL92) v3.5.1lsimeB127
Lsi01G002280Watermelon (Charleston Gray)lsiwcgB133
Lsi01G002280Watermelon (Charleston Gray)lsiwcgB149
Lsi01G002280Watermelon (97103) v1lsiwmB136
Lsi01G002280Watermelon (97103) v1lsiwmB138
Lsi01G002280Cucumber (Gy14) v2cgyblsiB013
Lsi01G002280Melon (DHL92) v3.6.1lsimedB138
Lsi01G002280Melon (DHL92) v3.6.1lsimedB139
Lsi01G002280Silver-seed gourdcarlsiB133
Lsi01G002280Silver-seed gourdcarlsiB734
Lsi01G002280Cucumber (Chinese Long) v3cuclsiB016
Lsi01G002280Cucumber (Chinese Long) v3cuclsiB537
Lsi01G002280Watermelon (97103) v2lsiwmbB130
Lsi01G002280Wax gourdlsiwgoB190