Cla009706 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009706
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	At1g29270 (Fragment) (AHRD V1 ***- C0SUY1_ARATH)
Location	Chr1 : 32247360 .. 32247910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGAAGACAAAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAACAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGTCCTTTTCCCCCCTCTCTTTTAACAATTCAAATTCTTCCTAATATTCAATATGTATTTAGATATCATCTGCTAAACTGAAATTTAATGTTTGCATAAAAGCAGGAAGTGAAAGTTGAGAAGAACGGAGAGGAGTTTAGAGTGAAAGTGAAATGTGAAAAGGGAGGGGACAAATTGGTTTCAGTATTAGAGGCATTTGAGAAAATGGGTCTAAATGTTTTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCCGAAGATGATCAATTGATTAATGTCAGTGATATTACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATCAGCTGCAAATCAGCATCACAAAGACAATCCTCAGAATGATGCTGAAATTTAG

mRNA sequence

ATGCAGGGAAGACAAAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAACAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGAAGTGAAAGTTGAGAAGAACGGAGAGGAGTTTAGAGTGAAAGTGAAATGTGAAAAGGGAGGGGACAAATTGGTTTCAGTATTAGAGGCATTTGAGAAAATGGGTCTAAATGTTTTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCCGAAGATGATCAATTGATTAATGTCAGTGATATTACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATCAGCTGCAAATCAGCATCACAAAGACAATCCTCAGAATGATGCTGAAATTTAG

Coding sequence (CDS)

ATGCAGGGAAGACAAAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAACAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGAAGTGAAAGTTGAGAAGAACGGAGAGGAGTTTAGAGTGAAAGTGAAATGTGAAAAGGGAGGGGACAAATTGGTTTCAGTATTAGAGGCATTTGAGAAAATGGGTCTAAATGTTTTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCCGAAGATGATCAATTGATTAATGTCAGTGATATTACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATCAGCTGCAAATCAGCATCACAAAGACAATCCTCAGAATGATGCTGAAATTTAG

Protein sequence

MQGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

Homology

[Close]

BLAST of Cla009706 vs. TrEMBL
Match: E5GC31_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-64
Identity = 127/147 (86.39%), Postives = 135/147 (91.84%), Query Frame = 1


Query: 3   GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEF 62
           GRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEF
Sbjct: 28  GRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLDMKREYLNSIKQFHSSKEVKVEKNGEEF 87

Query: 63  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITE 122
           RVKV+CEKGGD+LVSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+
Sbjct: 88  RVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEAIAVAEDHHQLLNLSDITD 147

Query: 123 AINVAIDGKLSAANQHHKDNPQNDAEI 149
           AINVAID KL A NQHH D P NDA++
Sbjct: 148 AINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Cla009706 vs. TrEMBL
Match: A0A0A0KHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519710 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.3e-64
Identity = 128/148 (86.49%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 3   GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEF 62
           GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEF
Sbjct: 28  GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLDMKREYLNSIKQFHSSKEVKVEKNGEEF 87

Query: 63  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITE 122
           RVKV+CEKGGD+LVSVLEAFEKMGLNV+EARVSCTECFCMEA AVAED  QL+N+SDITE
Sbjct: 88  RVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEATAVAEDHHQLLNLSDITE 147

Query: 123 AINVAIDGKLSAANQHHKDN-PQNDAEI 149
           AINVAID KL A NQHH D+ P NDA++
Sbjct: 148 AINVAIDPKLLAPNQHHNDSIPHNDAQL 175

[Close]

BLAST of Cla009706 vs. TrEMBL
Match: A0A0B0MJP3_GOSAR (Transcription factor bHLH35-like protein OS=Gossypium arboreum GN=F383_26226 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-32
Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 4   RQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEE-F 63
           R+R +  N +L  HKLK+KLE I+REY NL+A++ EY N +K    PKEVKVEK GE+ F
Sbjct: 28  RRRSIILNVLLHFHKLKVKLEEIQREYQNLMAIRNEYFNLLKHIQIPKEVKVEKLGEDQF 87

Query: 64  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEA 123
            VKV+C +GGDKLVS++EAFE++GLNV+ ARV C   F MEAI VA+D Q     D+T+A
Sbjct: 88  VVKVRCNRGGDKLVSIVEAFEELGLNVVRARVCCNHFFAMEAIVVAQDQQTTKTKDVTQA 147

Query: 124 INVAID 129
           I  AID
Sbjct: 148 ILKAID 153

[Close]

BLAST of Cla009706 vs. TrEMBL
Match: A0A0D2UFP3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G160900 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-32
Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 4   RQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEE-F 63
           R+R +  N +L  HKLK+KLE I+REY NL+A++ EY N +K    PKEVKVEK GE+ F
Sbjct: 28  RRRSIILNVLLHFHKLKVKLEEIQREYQNLMAIRNEYFNLLKHIQIPKEVKVEKLGEDQF 87

Query: 64  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEA 123
            VKV+C +GGDKLVS++EAFE++GLNV+ ARV C   F MEAI VA+D Q     D+T+A
Sbjct: 88  VVKVRCNRGGDKLVSIVEAFEELGLNVVRARVCCNHFFAMEAIVVAQDQQTTKTKDVTQA 147

Query: 124 INVAID 129
           I  AID
Sbjct: 148 ILKAID 153

[Close]

BLAST of Cla009706 vs. TrEMBL
Match: A0A061GDH3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029655 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-32
Identity = 74/126 (58.73%), Postives = 96/126 (76.19%), Query Frame = 1


Query: 4   RQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPK-EVKVEKNGEEF 63
           ++  V  N +L I+KLK+KLE I+REY NL+A+K EYL  ++    PK EVKVEK GEEF
Sbjct: 28  KRSSVVLNVLLHIYKLKVKLEEIQREYQNLMAIKNEYLTLLEHVQIPKQEVKVEKIGEEF 87

Query: 64  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEA 123
            VKV C KGGDKLVS+LEAF+++GLNVL+ARVSC   F MEAIAVA+D Q  ++ D+T+A
Sbjct: 88  VVKVTCNKGGDKLVSILEAFDELGLNVLQARVSCNHFFSMEAIAVAQDQQTTDIKDVTQA 147

Query: 124 INVAID 129
           +  AI+
Sbjct: 148 VLKAIE 153

[Close]

BLAST of Cla009706 vs. NCBI nr
Match: gi|659078435|ref|XP_008439723.1| (PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 3.1e-64
Identity = 127/147 (86.39%), Postives = 135/147 (91.84%), Query Frame = 1


Query: 3   GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEF 62
           GRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEF
Sbjct: 28  GRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLDMKREYLNSIKQFHSSKEVKVEKNGEEF 87

Query: 63  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITE 122
           RVKV+CEKGGD+LVSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+
Sbjct: 88  RVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEAIAVAEDHHQLLNLSDITD 147

Query: 123 AINVAIDGKLSAANQHHKDNPQNDAEI 149
           AINVAID KL A NQHH D P NDA++
Sbjct: 148 AINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Cla009706 vs. NCBI nr
Match: gi|449433736|ref|XP_004134653.1| (PREDICTED: uncharacterized protein LOC101213083 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-64
Identity = 128/148 (86.49%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 3   GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEF 62
           GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEF
Sbjct: 28  GRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLDMKREYLNSIKQFHSSKEVKVEKNGEEF 87

Query: 63  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITE 122
           RVKV+CEKGGD+LVSVLEAFEKMGLNV+EARVSCTECFCMEA AVAED  QL+N+SDITE
Sbjct: 88  RVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEATAVAEDHHQLLNLSDITE 147

Query: 123 AINVAIDGKLSAANQHHKDN-PQNDAEI 149
           AINVAID KL A NQHH D+ P NDA++
Sbjct: 148 AINVAIDPKLLAPNQHHNDSIPHNDAQL 175

[Close]

BLAST of Cla009706 vs. NCBI nr
Match: gi|823232574|ref|XP_012448993.1| (PREDICTED: uncharacterized protein LOC105772215 [Gossypium raimondii])

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-32
Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 4   RQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEE-F 63
           R+R +  N +L  HKLK+KLE I+REY NL+A++ EY N +K    PKEVKVEK GE+ F
Sbjct: 28  RRRSIILNVLLHFHKLKVKLEEIQREYQNLMAIRNEYFNLLKHIQIPKEVKVEKLGEDQF 87

Query: 64  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEA 123
            VKV+C +GGDKLVS++EAFE++GLNV+ ARV C   F MEAI VA+D Q     D+T+A
Sbjct: 88  VVKVRCNRGGDKLVSIVEAFEELGLNVVRARVCCNHFFAMEAIVVAQDQQTTKTKDVTQA 147

Query: 124 INVAID 129
           I  AID
Sbjct: 148 ILKAID 153

[Close]

BLAST of Cla009706 vs. NCBI nr
Match: gi|590623442|ref|XP_007025323.1| (Uncharacterized protein TCM_029655 [Theobroma cacao])

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-32
Identity = 74/126 (58.73%), Postives = 96/126 (76.19%), Query Frame = 1


Query: 4   RQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPK-EVKVEKNGEEF 63
           ++  V  N +L I+KLK+KLE I+REY NL+A+K EYL  ++    PK EVKVEK GEEF
Sbjct: 28  KRSSVVLNVLLHIYKLKVKLEEIQREYQNLMAIKNEYLTLLEHVQIPKQEVKVEKIGEEF 87

Query: 64  RVKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEA 123
            VKV C KGGDKLVS+LEAF+++GLNVL+ARVSC   F MEAIAVA+D Q  ++ D+T+A
Sbjct: 88  VVKVTCNKGGDKLVSILEAFDELGLNVLQARVSCNHFFSMEAIAVAQDQQTTDIKDVTQA 147

Query: 124 INVAID 129
           +  AI+
Sbjct: 148 VLKAIE 153

[Close]

BLAST of Cla009706 vs. NCBI nr
Match: gi|823224569|ref|XP_012445055.1| (PREDICTED: uncharacterized protein LOC105769147 [Gossypium raimondii])

HSP 1 Score: 139.4 bits (350), Expect = 5.0e-30
Identity = 69/137 (50.36%), Postives = 97/137 (70.80%), Query Frame = 1


Query: 4   RQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFR 63
           ++  +  N +L  HKLK+KLE I REY NL+ ++ +Y   +K     KEVKVEK GEEF 
Sbjct: 28  KRSSIVLNVLLQCHKLKVKLEEIHREYQNLMTIRNQYFTLLKHIQVSKEVKVEKVGEEFV 87

Query: 64  VKVKCEKGGDKLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAI 123
           VKV C KG DKL+S+LEAFE++GLNV+ ARV+C+  F MEAIAVA+D +  +++D+T+AI
Sbjct: 88  VKVSCNKGRDKLISILEAFEELGLNVVRARVNCSHFFAMEAIAVAQDQKTTDINDVTQAI 147

Query: 124 NVAIDGKLSAANQHHKD 141
            +AI+      ++H KD
Sbjct: 148 LMAIE---KQGDEHIKD 161

The following BLAST results are available for this feature:

BLAST of Cla009706 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC31_CUCME	2.1e-64	86.39	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KHW9_CUCSA	6.3e-64	86.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519710 PE=4 SV=1	[more]
A0A0B0MJP3_GOSAR	6.3e-32	57.14	Transcription factor bHLH35-like protein OS=Gossypium arboreum GN=F383_26226 PE=...	[more]
A0A0D2UFP3_GOSRA	6.3e-32	57.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G160900 PE=4 SV=1	[more]
A0A061GDH3_THECC	6.3e-32	58.73	Uncharacterized protein OS=Theobroma cacao GN=TCM_029655 PE=4 SV=1	[more]

BLAST of Cla009706 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078435\|ref\|XP_008439723.1\|	3.1e-64	86.39	PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo]	[more]
gi\|449433736\|ref\|XP_004134653.1\|	9.0e-64	86.49	PREDICTED: uncharacterized protein LOC101213083 [Cucumis sativus]	[more]
gi\|823232574\|ref\|XP_012448993.1\|	9.1e-32	57.14	PREDICTED: uncharacterized protein LOC105772215 [Gossypium raimondii]	[more]
gi\|590623442\|ref\|XP_007025323.1\|	9.1e-32	58.73	Uncharacterized protein TCM_029655 [Theobroma cacao]	[more]
gi\|823224569\|ref\|XP_012445055.1\|	5.0e-30	50.36	PREDICTED: uncharacterized protein LOC105769147 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009706	Cla009706.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 16..36 scor
None	No IPR available	PANTHER	PTHR31945	FAMILY NOT NAMED	coord: 4..128 score: 1.6
None	No IPR available	PANTHER	PTHR31945:SF19	SUBFAMILY NOT NAMED	coord: 4..128 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009706	Cla97C01G023830	Watermelon (97103) v2	wmwmbB234
Cla009706	Csa6G519710	Cucumber (Chinese Long) v2	cuwmB500
Cla009706	MELO3C007201	Melon (DHL92) v3.5.1	mewmB572
Cla009706	ClCG01G023870	Watermelon (Charleston Gray)	wcgwmB141
Cla009706	CSPI06G35520	Wild cucumber (PI 183967)	cpiwmB519
Cla009706	Cucsa.047090	Cucumber (Gy14) v1	cgywmB026
Cla009706	CmaCh03G013320	Cucurbita maxima (Rimu)	cmawmB628
Cla009706	CmaCh07G001750	Cucurbita maxima (Rimu)	cmawmB826
Cla009706	CmoCh03G013330	Cucurbita moschata (Rifu)	cmowmB619
Cla009706	CmoCh07G001700	Cucurbita moschata (Rifu)	cmowmB816
Cla009706	Lsi01G002280	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla009706	Cp4.1LG10g05530	Cucurbita pepo (Zucchini)	cpewmB074
Cla009706	Cp4.1LG19g06810	Cucurbita pepo (Zucchini)	cpewmB482
Cla009706	CsGy6G035010	Cucumber (Gy14) v2	cgybwmB468
Cla009706	MELO3C007201.2	Melon (DHL92) v3.6.1	medwmB561
Cla009706	Carg15355	Silver-seed gourd	carwmB0545
Cla009706	Carg23113	Silver-seed gourd	carwmB0957
Cla009706	CsaV3_6G051020	Cucumber (Chinese Long) v3	cucwmB526
Cla009706	Bhi07G000180	Wax gourd	wgowmB557

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009706	Cucurbita moschata (Rifu)	cmowmB188
Cla009706	Cucurbita moschata (Rifu)	cmowmB372
Cla009706	Melon (DHL92) v3.5.1	mewmB167
Cla009706	Watermelon (Charleston Gray)	wcgwmB238
Cla009706	Cucumber (Chinese Long) v2	cuwmB052
Cla009706	Cucurbita pepo (Zucchini)	cpewmB039
Cla009706	Cucurbita pepo (Zucchini)	cpewmB263
Cla009706	Cucurbita pepo (Zucchini)	cpewmB513
Cla009706	Bottle gourd (USVL1VR-Ls)	lsiwmB200
Cla009706	Cucumber (Gy14) v2	cgybwmB052
Cla009706	Melon (DHL92) v3.6.1	medwmB164
Cla009706	Silver-seed gourd	carwmB0143
Cla009706	Silver-seed gourd	carwmB0798
Cla009706	Cucumber (Chinese Long) v3	cucwmB058
Cla009706	Cucumber (Chinese Long) v3	cucwmB624
Cla009706	Watermelon (97103) v2	wmwmbB261
Cla009706	Wax gourd	wgowmB507
Cla009706	Watermelon (97103) v1	wmwmB084
Cla009706	Cucumber (Gy14) v1	cgywmB411
Cla009706	Cucurbita maxima (Rimu)	cmawmB201
Cla009706	Cucurbita maxima (Rimu)	cmawmB379
Cla009706	Cucurbita maxima (Rimu)	cmawmB498