Lsi01G002000 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G002000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Self-incompatibility protein
Location	chr01 : 1881234 .. 1881680 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTTTGATGAATTATGGCCTCATTACATATGTTGTAGTGATAATGGTGATGATGGGTCAGCCATGTTGGGCAGGCTCAAAAACAATGCCACCATTGAGTTCATGGAAGGTGGTGATTTTTAACCAATTGAGTCCGGGCCAAACTTTATCCCTTCATTGCAAATCGAAAGATGACGATTTGGGCAATCATTCTCTACGAGTGGGTGAAGATTTTTCATGGAAATTCAAAGAGAACGTATTTTCAACAACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACATGTTACAATGGATGTGTTTTGGCCAGAGAGACACAATTGGCTTGCTTACAGATGCAATTACGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCTATGAATTCAAGGGAGTTTGTGCGTAAATGGGACAACTAA

mRNA sequence

ATGAATGTTTTGATGAATTATGGCCTCATTACATATGTTGTAGTGATAATGGTGATGATGGGTCAGCCATGTTGGGCAGGCTCAAAAACAATGCCACCATTGAGTTCATGGAAGGTGGTGATTTTTAACCAATTGAGTCCGGGCCAAACTTTATCCCTTCATTGCAAATCGAAAGATGACGATTTGGGCAATCATTCTCTACGAGTGGGTGAAGATTTTTCATGGAAATTCAAAGAGAACGTATTTTCAACAACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACATGTTACAATGGATGTGTTTTGGCCAGAGAGACACAATTGGCTTGCTTACAGATGCAATTACGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCTATGAATTCAAGGGAGTTTGTGCGTAAATGGGACAACTAA

Coding sequence (CDS)

ATGAATGTTTTGATGAATTATGGCCTCATTACATATGTTGTAGTGATAATGGTGATGATGGGTCAGCCATGTTGGGCAGGCTCAAAAACAATGCCACCATTGAGTTCATGGAAGGTGGTGATTTTTAACCAATTGAGTCCGGGCCAAACTTTATCCCTTCATTGCAAATCGAAAGATGACGATTTGGGCAATCATTCTCTACGAGTGGGTGAAGATTTTTCATGGAAATTCAAAGAGAACGTATTTTCAACAACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACATGTTACAATGGATGTGTTTTGGCCAGAGAGACACAATTGGCTTGCTTACAGATGCAATTACGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCTATGAATTCAAGGGAGTTTGTGCGTAAATGGGACAACTAA

Protein sequence

MNVLMNYGLITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN

Homology

[Close]

BLAST of Lsi01G002000 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 35  SSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSS 94
           + W V + N L  G+TL  HCKSKDDDLG  +L  G +F+W FKEN F TT +WC + S+
Sbjct: 17  NKWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYM-ST 76

Query: 95  SKKHVTMDVFWPE-RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD 148
            +KH  +DVFW E  H+WL YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Sbjct: 77  DQKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIPENRDEFSHKWE 129

[Close]

BLAST of Lsi01G002000 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-27
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 1


Query: 10  ITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRV 69
           +  V V++ +  +P    S +  P  +W V + N LS  QTL +HCKSKDDDLG H+L  
Sbjct: 12  LVVVTVVLALAIRP----SVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAA 71

Query: 70  GEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDG 129
           G +F+WKFKEN F TT FWC L    K     +VFW E  ++  +RC Y+ CIW+A+ +G
Sbjct: 72  GTEFAWKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKE--DFFQFRCRYKNCIWIAKVEG 131

Query: 130 IYLVNVPMNSREFVRKW 147
           IYL N+P    E   +W
Sbjct: 132 IYLKNIPEGHDELWHEW 142

[Close]

BLAST of Lsi01G002000 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.0e-27
Identity = 61/134 (45.52%), Postives = 79/134 (58.96%), Query Frame = 1


Query: 13  VVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGED 72
           V+V++ +  +P    S +  P  +W V + N LS  QTL LHCKSKDDDLG H L  G +
Sbjct: 11  VIVVLALAIRP----SVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTGTE 70

Query: 73  FSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYL 132
            +WKFKEN F TT FWC L           VFW E  ++  +RC Y+ CIW A+D+GIYL
Sbjct: 71  SNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNE--DFFQFRCRYKDCIWTAKDEGIYL 130

Query: 133 VNVPMNSREFVRKW 147
            N+P    E  +KW
Sbjct: 131 KNIPEGRDELWQKW 138

[Close]

BLAST of Lsi01G002000 vs. TrEMBL
Match: A0A0D3DGQ0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.3e-24
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 32  PPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTL 91
           P +S W+V++ N L+  +TL +HCKSK+DDLG H+LR+G+ FSW F EN+  +T FWC L
Sbjct: 36  PKISEWQVMVVNGLATSETLFIHCKSKEDDLGEHNLRLGDRFSWNFGENMLHSTLFWCYL 95

Query: 92  TSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD 148
            S    H+ ++VFW +    L +RC ++ C+W A+ DG+YL N        + KW+
Sbjct: 96  -SKDDGHMNVEVFWDD--VILFHRCGWKKCVWTAKTDGLYLWNFANGEDLLLEKWE 148

[Close]

BLAST of Lsi01G002000 vs. TrEMBL
Match: Q9FT11_BRANA (BnaC07g41700D protein OS=Brassica napus GN=homologue of SPH PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.3e-24
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 32  PPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTL 91
           P +S W+V++ N L+  +TL +HCKSK+DDLG H+LR+G+ FSW F EN+  +T FWC L
Sbjct: 36  PKISEWQVMVVNGLATSETLFIHCKSKEDDLGEHNLRLGDRFSWNFGENMLHSTLFWCYL 95

Query: 92  TSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD 148
            S    H+ ++VFW +    L +RC ++ C+W A+ DG+YL N        + KW+
Sbjct: 96  -SKDDGHMNVEVFWDD--VILFHRCGWKKCVWTAKTDGLYLWNFANGEDLLLEKWE 148

[Close]

BLAST of Lsi01G002000 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 31  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCT 90
           +P +S W+V + N L+ G+TL +HCKSK+DDLG  +L+    FSW F EN+  +T FWC 
Sbjct: 35  VPKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCY 94

Query: 91  LTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD 148
           + +    H+ ++VFW +    L +RC ++ CIW A+ DG+YL N         RKW+
Sbjct: 95  M-NKDNGHMNVNVFWDD--VILFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWE 148

[Close]

BLAST of Lsi01G002000 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 107.5 bits (267), Expect = 7.4e-24
Identity = 46/116 (39.66%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 31  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCT 90
           +P +S W+V + N L+ G+TL +HCKSK++DLG+ +L+  + FSW F EN+  +T FWC 
Sbjct: 35  VPKISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCY 94

Query: 91  LTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKW 147
           + S    H+ + VFW +    L +RC+++ C+W A++DG+YL N  +       KW
Sbjct: 95  M-SKDDGHMNVKVFWDD--VILFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of Lsi01G002000 vs. TAIR10
Match: AT5G04350.1 (AT5G04350.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 24  CWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFS 83
           C   S     +   KVV+ NQL   + L +HC+SKDDDLG H L++G+D+ + F +N++ 
Sbjct: 14  CIGVSNAFHEIGESKVVLSNQLEHSKLLKVHCRSKDDDLGEHILKIGQDYEFTFGDNIWQ 73

Query: 84  TTRFWCTLTS--SSKKHVTMDVFWPERHNWLAYRCNYE-----TCIWVAQDDGIY 132
           TT F C +    + K H+          +++AY  ++      +C W+ ++DGIY
Sbjct: 74  TTSFSCQMDQGPNFKHHL----------DFVAYETSWSKALEASCKWIGREDGIY 118

[Close]

BLAST of Lsi01G002000 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 33  PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLT 92
           P S   V I N L    TL  HCKSKDDDLGN +L+ GE +S+ F    F  T ++C+ +
Sbjct: 44  PTSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFS 103

Query: 93  SSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDG 130
             ++ H + D++   R +    +C  + C+W  + +G
Sbjct: 104 WPNESH-SFDIYKDHRDSGGDNKCESDRCVWKIRRNG 139

[Close]

BLAST of Lsi01G002000 vs. TAIR10
Match: AT5G04347.1 (AT5G04347.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 39  VVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSS--K 98
           +++ N+L+  + L + C+SKDD+LG+H LRVG+     F +NV+  T FWC L      K
Sbjct: 24  LLVKNELN-NKVLGVRCRSKDDNLGDHILRVGQMTKNNFDDNVWRRTLFWCNLWKGPDFK 83

Query: 99  KHVTMDVFWPERHNWLA-YRCNYETCIWVAQDDGIYLVNVP 137
            HV  D +   R  W A     Y   +W+A++DGIY    P
Sbjct: 84  LHVAFDAY---RSQWKADIGPRY---LWIAREDGIYYTQHP 117

[Close]

BLAST of Lsi01G002000 vs. NCBI nr
Match: gi|659080970|ref|XP_008441078.1| (PREDICTED: uncharacterized protein LOC103485305 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 6.2e-65
Identity = 113/140 (80.71%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 9   LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLR 68
           L+ YVVV++ MMG+ C  GSKTMPP SSWKVV+FNQLSPGQ+L++HCKSKD+DLG HSLR
Sbjct: 11  LVPYVVVVIAMMGESCLGGSKTMPPFSSWKVVVFNQLSPGQSLTVHCKSKDNDLGEHSLR 70

Query: 69  VGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDD 128
           V E FSWKFKEN+FSTTRFWC LTSSSKK VTMDVFWPERH+WLAYRCNY TCIWVAQDD
Sbjct: 71  VSEKFSWKFKENLFSTTRFWCGLTSSSKKTVTMDVFWPERHDWLAYRCNYATCIWVAQDD 130

Query: 129 GIYLVNVPMNSREFVRKWDN 149
           GIY+VNV  N REFVRKWDN
Sbjct: 131 GIYIVNVSTNLREFVRKWDN 150

[Close]

BLAST of Lsi01G002000 vs. NCBI nr
Match: gi|659109767|ref|XP_008454866.1| (PREDICTED: uncharacterized protein LOC103495175 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.9e-35
Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 1


Query: 27  GSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTR 86
           GSK  P  S W V I N+LS  + L  HCKSKDD+LG H++ VG+ + W+FKEN   TT 
Sbjct: 4   GSKYTPSFSKWTVAIINELSSNKQLFAHCKSKDDNLGYHTVEVGQTYQWQFKENALQTTL 63

Query: 87  FWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKW 146
           FWCTL + +  HVT +VFW E+  WL  RCN+  C+W A+DDGIYL+N+P +S E + KW
Sbjct: 64  FWCTLWTPTNLHVTFEVFWREKGEWLRSRCNFRACMWYARDDGIYLLNIPESSFELIHKW 123

Query: 147 D 148
           +
Sbjct: 124 E 124

[Close]

BLAST of Lsi01G002000 vs. NCBI nr
Match: gi|645260261|ref|XP_008235747.1| (PREDICTED: uncharacterized protein LOC103334546 [Prunus mume])

HSP 1 Score: 148.7 bits (374), Expect = 8.2e-33
Identity = 67/140 (47.86%), Postives = 91/140 (65.00%), Query Frame = 1


Query: 9   LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLR 68
           ++ +V V ++ +  PC  GS      + W V + N LS GQTL  HCKSKDDDLG  +L 
Sbjct: 8   VVFFVCVAILALSAPC-LGSPVGIRYNRWHVHVVNNLSAGQTLFAHCKSKDDDLGERNLA 67

Query: 69  VGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-RHNWLAYRCNYETCIWVAQD 128
            G +F+W FKEN   TT +WC + S+ +KH  +DVFW E  H+WL YRCN++ CIW+A+D
Sbjct: 68  PGTEFNWSFKENFSGTTLYWCYM-STGQKHAALDVFWVEGEHSWLQYRCNWKDCIWIAKD 127

Query: 129 DGIYLVNVPMNSREFVRKWD 148
           DGIY+  +P N  EF  KW+
Sbjct: 128 DGIYIKIIPENRDEFSHKWE 145

[Close]

BLAST of Lsi01G002000 vs. NCBI nr
Match: gi|1009148886|ref|XP_015892179.1| (PREDICTED: uncharacterized protein LOC107426492 [Ziziphus jujuba])

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-32
Identity = 65/137 (47.45%), Postives = 87/137 (63.50%), Query Frame = 1


Query: 14  VVIMVMMGQPCWAGSK--TMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGE 73
           V+++  M +PC   ++  T  PL  + + I N LS G+ L +HC+SKDDDLG H+L  G 
Sbjct: 15  VLVLSTMSRPCCRSARVDTGLPLYKYNMFIVNGLSSGRDLFIHCQSKDDDLGEHNLTTGS 74

Query: 74  DFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-RHNWLAYRCNYETCIWVAQDDGI 133
            F+W F+ N + TTRFWC       +H   DVFWPE RH WL  RC+Y+ CIW A+DDG 
Sbjct: 75  HFTWTFRTNFWGTTRFWC-YARRDNEHAAFDVFWPEKRHKWLETRCDYKVCIWTAKDDGF 134

Query: 134 YLVNVPMNSREFVRKWD 148
           YL NVP+N  E + KW+
Sbjct: 135 YLRNVPINQDELIHKWE 150

[Close]

BLAST of Lsi01G002000 vs. NCBI nr
Match: gi|595792631|ref|XP_007200064.1| (hypothetical protein PRUPE_ppa022213mg, partial [Prunus persica])

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 35  SSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSS 94
           + W V + N L  G+TL  HCKSKDDDLG  +L  G +F+W FKEN F TT +WC + S+
Sbjct: 17  NKWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYM-ST 76

Query: 95  SKKHVTMDVFWPE-RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD 148
            +KH  +DVFW E  H+WL YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Sbjct: 77  DQKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIPENRDEFSHKWE 129

The following BLAST results are available for this feature:

BLAST of Lsi01G002000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G002000 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VWE5_PRUPE	1.4e-31	52.63	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S...	[more]
V4TTV3_9ROSI	6.1e-27	43.80	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
V4VUI1_9ROSI	8.0e-27	45.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1	[more]
A0A0D3DGQ0_BRAOL	6.3e-24	43.10	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
Q9FT11_BRANA	6.3e-24	43.10	BnaC07g41700D protein OS=Brassica napus GN=homologue of SPH PE=4 SV=1	[more]

BLAST of Lsi01G002000 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16295.1	1.1e-24	41.03	S-protein homologue 1	[more]
AT4G29035.1	7.4e-24	39.66	Plant self-incompatibility protein S1 family	[more]
AT5G04350.1	1.1e-14	33.04	Plant self-incompatibility protein S1 family	[more]
AT4G16195.1	1.7e-12	35.05	Plant self-incompatibility protein S1 family	[more]
AT5G04347.1	1.9e-11	37.62	Plant self-incompatibility protein S1 family	[more]

BLAST of Lsi01G002000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080970\|ref\|XP_008441078.1\|	6.2e-65	80.71	PREDICTED: uncharacterized protein LOC103485305 [Cucumis melo]	[more]
gi\|659109767\|ref\|XP_008454866.1\|	3.9e-35	52.07	PREDICTED: uncharacterized protein LOC103495175 [Cucumis melo]	[more]
gi\|645260261\|ref\|XP_008235747.1\|	8.2e-33	47.86	PREDICTED: uncharacterized protein LOC103334546 [Prunus mume]	[more]
gi\|1009148886\|ref\|XP_015892179.1\|	2.4e-32	47.45	PREDICTED: uncharacterized protein LOC107426492 [Ziziphus jujuba]	[more]
gi\|595792631\|ref\|XP_007200064.1\|	2.0e-31	52.63	hypothetical protein PRUPE_ppa022213mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002000.1	Lsi01G002000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 38..146 score: 5.8
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 1..148 score: 3.6
None	No IPR available	PANTHER	PTHR31232:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATED	coord: 1..148 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G002000	CmaCh07G001480	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G002000	Carg23093	Silver-seed gourd	carlsiB871

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G002000	Wild cucumber (PI 183967)	cpilsiB016
Lsi01G002000	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G002000	Cucumber (Chinese Long) v2	culsiB017
Lsi01G002000	Cucumber (Chinese Long) v2	culsiB434
Lsi01G002000	Melon (DHL92) v3.5.1	lsimeB127
Lsi01G002000	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G002000	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G002000	Watermelon (Charleston Gray)	lsiwcgB133
Lsi01G002000	Watermelon (97103) v1	lsiwmB136
Lsi01G002000	Watermelon (97103) v1	lsiwmB144
Lsi01G002000	Cucumber (Gy14) v2	cgyblsiB013
Lsi01G002000	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G002000	Melon (DHL92) v3.6.1	lsimedB138
Lsi01G002000	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G002000	Silver-seed gourd	carlsiB133
Lsi01G002000	Silver-seed gourd	carlsiB496
Lsi01G002000	Silver-seed gourd	carlsiB734
Lsi01G002000	Cucumber (Chinese Long) v3	cuclsiB016
Lsi01G002000	Cucumber (Chinese Long) v3	cuclsiB462
Lsi01G002000	Watermelon (97103) v2	lsiwmbB115
Lsi01G002000	Watermelon (97103) v2	lsiwmbB129
Lsi01G002000	Watermelon (97103) v2	lsiwmbB130
Lsi01G002000	Wax gourd	lsiwgoB164
Lsi01G002000	Wax gourd	lsiwgoB179
Lsi01G002000	Wax gourd	lsiwgoB190
Lsi01G002000	Bottle gourd (USVL1VR-Ls)	lsilsiB066
Lsi01G002000	Cucumber (Gy14) v1	cgylsiB022
Lsi01G002000	Cucumber (Gy14) v1	cgylsiB357
Lsi01G002000	Cucurbita maxima (Rimu)	cmalsiB199
Lsi01G002000	Cucurbita maxima (Rimu)	cmalsiB368
Lsi01G002000	Cucurbita maxima (Rimu)	cmalsiB602
Lsi01G002000	Cucurbita moschata (Rifu)	cmolsiB189
Lsi01G002000	Cucurbita moschata (Rifu)	cmolsiB354
Lsi01G002000	Cucurbita moschata (Rifu)	cmolsiB588
Lsi01G002000	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G002000	Cucurbita pepo (Zucchini)	cpelsiB021
Lsi01G002000	Cucurbita pepo (Zucchini)	cpelsiB049
Lsi01G002000	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G002000	Cucurbita pepo (Zucchini)	cpelsiB415